| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is yebC [C]
Identifier: 213692037
GI number: 213692037
Start: 1337607
End: 1338362
Strand: Direct
Name: yebC [C]
Synonym: Blon_1155
Alternate gene names: 213692037
Gene position: 1337607-1338362 (Clockwise)
Preceding gene: 213692036
Following gene: 213692038
Centisome position: 47.22
GC content: 62.7
Gene sequence:
>756_bases ATGTCAGGTCATTCCAAGTGGGCGACCACCAAGCACAAGAAGGCCGCCATCGACGCCAAGCGCGGCAAGCTCTTCGCCAA GCTCATCAAGAACATCGAAATCGCCGCCCGCCTCGGCGGTGGCGACCCAGACGGCAACCCGTCCCTGTACGACGCCATCT ACAAGGCCAAGAAGGCTTCCATGCCGGCCGACAACATCGCCCGTGCCGTCAAGCGTGGTGCCGGTGACGAAGACGGTGCC GCCAACTACGAGGACATCGTCTACGAGGGCTACGCTCCCGCTGGCGTGGGCCTCATCATCGAGTGCCTGACCGACAACCG CAACCGTGCGGCCGCCGAAGTGCGTTCCACCCTGACCAAGGGCAACGGCTCCCTGGCCACCTCCGGCTCCGTGTCCTTCA ACTTTGAGCGCAAGGGCCAGATCGTGGTTCCGTCCGAAGGCGTGGACTTCGACAAGCTGTTCGAGACCGCAGCCGAGGCT GGCGCCGAGGATGTCACCGATGACGATGAGGTCTACACCGTCATCACCGGCCCGTCCGATCTGTTCACCGTGCGCAAGGC TCTGCAGGACGCCGGTTTCGACTACGATTCCGCCGACCAGGTCATGCAGCCGAAGAACGAGGTCGAGCTGAGCCTCGAAG ACGCCCGCAAGGTGTCCAAGCTCATCGACAACCTCGATGATCTCGACGATGTGCAGAACATCTACTCCAACTGGACCGCC TCCGACGAGGTGATGGCCCAGCTCGACGAGGAGTAA
Upstream 100 bases:
>100_bases CATGATTCAAAAAGACAATCGAAAACATCACGGGTATGTCTGATTAACGGCCTACAATCGTTTCGTTTGACATCATCCGT TTATTACTGCTAGGAGCATT
Downstream 100 bases:
>100_bases TCCTCGTGATCATCCTCGGCGTCGACCCCGGGCTCACGCGCTGCGGGGTCGGCGTGATCGAAGCCGGCGAGCACCGCCGG CTTTCGTTTATTCACGTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MSGHSKWATTKHKKAAIDAKRGKLFAKLIKNIEIAARLGGGDPDGNPSLYDAIYKAKKASMPADNIARAVKRGAGDEDGA ANYEDIVYEGYAPAGVGLIIECLTDNRNRAAAEVRSTLTKGNGSLATSGSVSFNFERKGQIVVPSEGVDFDKLFETAAEA GAEDVTDDDEVYTVITGPSDLFTVRKALQDAGFDYDSADQVMQPKNEVELSLEDARKVSKLIDNLDDLDDVQNIYSNWTA SDEVMAQLDEE
Sequences:
>Translated_251_residues MSGHSKWATTKHKKAAIDAKRGKLFAKLIKNIEIAARLGGGDPDGNPSLYDAIYKAKKASMPADNIARAVKRGAGDEDGA ANYEDIVYEGYAPAGVGLIIECLTDNRNRAAAEVRSTLTKGNGSLATSGSVSFNFERKGQIVVPSEGVDFDKLFETAAEA GAEDVTDDDEVYTVITGPSDLFTVRKALQDAGFDYDSADQVMQPKNEVELSLEDARKVSKLIDNLDDLDDVQNIYSNWTA SDEVMAQLDEE >Mature_250_residues SGHSKWATTKHKKAAIDAKRGKLFAKLIKNIEIAARLGGGDPDGNPSLYDAIYKAKKASMPADNIARAVKRGAGDEDGAA NYEDIVYEGYAPAGVGLIIECLTDNRNRAAAEVRSTLTKGNGSLATSGSVSFNFERKGQIVVPSEGVDFDKLFETAAEAG AEDVTDDDEVYTVITGPSDLFTVRKALQDAGFDYDSADQVMQPKNEVELSLEDARKVSKLIDNLDDLDDVQNIYSNWTAS DEVMAQLDEE
Specific function: Unknown
COG id: COG0217
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TACO1 family
Homologues:
Organism=Homo sapiens, GI27545315, Length=246, Percent_Identity=33.739837398374, Blast_Score=132, Evalue=4e-31, Organism=Escherichia coli, GI1788171, Length=249, Percent_Identity=50.6024096385542, Blast_Score=232, Evalue=2e-62, Organism=Escherichia coli, GI1788294, Length=237, Percent_Identity=38.3966244725738, Blast_Score=134, Evalue=7e-33, Organism=Caenorhabditis elegans, GI17556100, Length=246, Percent_Identity=25.2032520325203, Blast_Score=67, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6321458, Length=264, Percent_Identity=32.9545454545455, Blast_Score=118, Evalue=8e-28, Organism=Drosophila melanogaster, GI24583305, Length=246, Percent_Identity=29.2682926829268, Blast_Score=92, Evalue=4e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1155_BIFLI (B7GR15)
Other databases:
- EMBL: CP001095 - RefSeq: YP_002322623.1 - ProteinModelPortal: B7GR15 - GeneID: 7053321 - GenomeReviews: CP001095_GR - KEGG: bln:Blon_1155 - HOGENOM: HBG715231 - ProtClustDB: PRK00110 - HAMAP: MF_00693 - InterPro: IPR002876 - InterPro: IPR017856 - Gene3D: G3DSA:1.10.10.200 - PANTHER: PTHR12532 - TIGRFAMs: TIGR01033
Pfam domain/function: PF01709 DUF28; SSF75625 DUF28
EC number: NA
Molecular weight: Translated: 27092; Mature: 26961
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGHSKWATTKHKKAAIDAKRGKLFAKLIKNIEIAARLGGGDPDGNPSLYDAIYKAKKAS CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCHHHHHHHHHHHCC MPADNIARAVKRGAGDEDGAANYEDIVYEGYAPAGVGLIIECLTDNRNRAAAEVRSTLTK CCHHHHHHHHHHCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHC GNGSLATSGSVSFNFERKGQIVVPSEGVDFDKLFETAAEAGAEDVTDDDEVYTVITGPSD CCCCEEECCCEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCHH LFTVRKALQDAGFDYDSADQVMQPKNEVELSLEDARKVSKLIDNLDDLDDVQNIYSNWTA HHHHHHHHHHCCCCCCCHHHHHCCCHHHEECHHHHHHHHHHHHCCCCHHHHHHHHHCCCC SDEVMAQLDEE CHHHHHHHCCC >Mature Secondary Structure SGHSKWATTKHKKAAIDAKRGKLFAKLIKNIEIAARLGGGDPDGNPSLYDAIYKAKKAS CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCHHHHHHHHHHHCC MPADNIARAVKRGAGDEDGAANYEDIVYEGYAPAGVGLIIECLTDNRNRAAAEVRSTLTK CCHHHHHHHHHHCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHC GNGSLATSGSVSFNFERKGQIVVPSEGVDFDKLFETAAEAGAEDVTDDDEVYTVITGPSD CCCCEEECCCEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCHH LFTVRKALQDAGFDYDSADQVMQPKNEVELSLEDARKVSKLIDNLDDLDDVQNIYSNWTA HHHHHHHHHHCCCCCCCHHHHHCCCHHHEECHHHHHHHHHHHHCCCCHHHHHHHHHCCCC SDEVMAQLDEE CHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA