| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692002
Identifier: 213692002
GI number: 213692002
Start: 1309450
End: 1311069
Strand: Reverse
Name: 213692002
Synonym: Blon_1120
Alternate gene names: NA
Gene position: 1311069-1309450 (Counterclockwise)
Preceding gene: 213692003
Following gene: 213692001
Centisome position: 46.28
GC content: 65.0
Gene sequence:
>1620_bases ATGGCGGAACATAGGCAGCCTCCAGCCTCGCTGGGCTTCCTGATGGCCGCATGGACTCGCGCCCACTGCGTGGTGCCCTC CGGCTATGACCTCAACAAGCCGTTCAGCCTCGTGGGCTGGCAGTTGGCGAACGCGGTGGACTTCTACACCGTCAAGGCCG GTACGCGGTTCAATGCGTCGCGCCCGTTGCAGGGCGGCGCGTTCCAATGGCGTCGCGGCCAGATTGTCGGCGGCCAGAAG CTTGGTAAGTCGCCGTTCGGCGCTGCCGTGGCCTGCTTCGAGGCCGTGGGCCCCTGCGTGTTCTGCGGCTGGGCCGAAGG CGGCGAGGAGTTCCGCTGCGAGGACTGGGGGTGTGGGTGCGGCTTCTCCTACGAGTACCGGCCGGGAGAGCCGATGGGCA TGCCCCGGCGCACCGCGTTGGTGCAGCTGCTCGCCAACAGTGAGGAGCAGACCGCGAACGTGTACCGGCCTTTGCAGACC ATGGTGCGCAACGGCCATCTGGACGACCTGATGAAGGTGCGCGAGGGCTTCATCCGCCTGCCCAACGGCGGGCGCATCGA CCCAGTGACCGCCTCCGCCCGCTCGAAGCTGGGCAATCCCGTGAACTTTGCTCTGTGCGACGAGTCGGGCGTGTACACGA AGCGCTCCGGCATGTTCGAGGTTGCGGACACGGTGCTGCGTGGCGTCACCGGCATGGACGGGCGCATGCTGGAGCTCACG AACCCGTGGGACCCGATGGACGCGAGCTTCGGCCAGTCTACCTACGAGTCGACGGCGAAGGACATCATGAGGTTCTTCCC CCGGCACGACCCCAACCTGGACTTCACCGACAGGGCCGACCGGCGCAGGATCCTCGAGTTCGTGTACAAGGGCTCGCCGT GGGTGAACCTGGACGCGATCGAGGCGACATGCGAGGAACTGCTGCCACGCGACCCCGCGCAGGCCCGTCGCTTCTTCGGC TGCGAACTCGTGCAGGGCCTCGGCTCCTACATGCCCGAAGCCCTCTACGATGACGGCATCGACGAACGCCCGTACCCGGC CGACGATACCGAGATATGCCTCGGCTTCGACGGTTCCCAGTCCGGCGACTGGTCGGCGATTCGCGCCGAGACCGTGGATG GATACCGGTTCACGCCGACCTATGGCGTGGACAGGCGCCCGACCTACTGGAACCCGGTCGAATGGGAGGGACGGATCCCA CGCAGCGAGGTCGACGCCGCCGTTTCCGACCTGTTCAATCATTTCAAGGTCAGGCGATTCTACTGCGACCCTCATTTGTG GGAGTCGCTTATCGATGATTGGAGTGTTCGTTTCGGCGAGGATGTGGTGGTGCAGTGGCCAACGAACCGTACCGGCCGCA TGTATGATGCGCTCACCCGTTTCATGACCGACACCACCGACGGCACCACCACCCACAGCGGCGACCCGGTGGCGAAACTG CACATGATGGCGGCGCGCAAGATCGCCAAGCCCGGCGACAAGTACGTGCTCGGCAAGCCGAGCGAGAATCAGAAAATCGA TATAGCGATGGCCGACATCCTCGCGCACGAGGCGGCGTCCGACATGAGGGCGCTCAACTGGGGTAACGATTCGAACAGGA TCGTCGTGTTCCGATGGTGA
Upstream 100 bases:
>100_bases CGACGAGAAGCCGCAGGCGCGCAGGAGAAGCGCGAAGATAGTCGATTTCCCTGATCCGCGCGACGAATGGCAGTCGATGC AGGAATAAGCGAGGTGTCGT
Downstream 100 bases:
>100_bases AAAAGGAGGGATGACTGATGGCTTTTCTTTCCGGCCGGCTTTACGGGACCGCCCAGAGCATGGACTTGATCCTTGAGACC AGCCAATCCCGTTACGATAC
Product: hypothetical protein
Products: NA
Alternate protein names: Terminase; Phage Terminase Protein Large Subunit-Like Protein; LOW QUALITY PROTEIN Protein
Number of amino acids: Translated: 539; Mature: 538
Protein sequence:
>539_residues MAEHRQPPASLGFLMAAWTRAHCVVPSGYDLNKPFSLVGWQLANAVDFYTVKAGTRFNASRPLQGGAFQWRRGQIVGGQK LGKSPFGAAVACFEAVGPCVFCGWAEGGEEFRCEDWGCGCGFSYEYRPGEPMGMPRRTALVQLLANSEEQTANVYRPLQT MVRNGHLDDLMKVREGFIRLPNGGRIDPVTASARSKLGNPVNFALCDESGVYTKRSGMFEVADTVLRGVTGMDGRMLELT NPWDPMDASFGQSTYESTAKDIMRFFPRHDPNLDFTDRADRRRILEFVYKGSPWVNLDAIEATCEELLPRDPAQARRFFG CELVQGLGSYMPEALYDDGIDERPYPADDTEICLGFDGSQSGDWSAIRAETVDGYRFTPTYGVDRRPTYWNPVEWEGRIP RSEVDAAVSDLFNHFKVRRFYCDPHLWESLIDDWSVRFGEDVVVQWPTNRTGRMYDALTRFMTDTTDGTTTHSGDPVAKL HMMAARKIAKPGDKYVLGKPSENQKIDIAMADILAHEAASDMRALNWGNDSNRIVVFRW
Sequences:
>Translated_539_residues MAEHRQPPASLGFLMAAWTRAHCVVPSGYDLNKPFSLVGWQLANAVDFYTVKAGTRFNASRPLQGGAFQWRRGQIVGGQK LGKSPFGAAVACFEAVGPCVFCGWAEGGEEFRCEDWGCGCGFSYEYRPGEPMGMPRRTALVQLLANSEEQTANVYRPLQT MVRNGHLDDLMKVREGFIRLPNGGRIDPVTASARSKLGNPVNFALCDESGVYTKRSGMFEVADTVLRGVTGMDGRMLELT NPWDPMDASFGQSTYESTAKDIMRFFPRHDPNLDFTDRADRRRILEFVYKGSPWVNLDAIEATCEELLPRDPAQARRFFG CELVQGLGSYMPEALYDDGIDERPYPADDTEICLGFDGSQSGDWSAIRAETVDGYRFTPTYGVDRRPTYWNPVEWEGRIP RSEVDAAVSDLFNHFKVRRFYCDPHLWESLIDDWSVRFGEDVVVQWPTNRTGRMYDALTRFMTDTTDGTTTHSGDPVAKL HMMAARKIAKPGDKYVLGKPSENQKIDIAMADILAHEAASDMRALNWGNDSNRIVVFRW >Mature_538_residues AEHRQPPASLGFLMAAWTRAHCVVPSGYDLNKPFSLVGWQLANAVDFYTVKAGTRFNASRPLQGGAFQWRRGQIVGGQKL GKSPFGAAVACFEAVGPCVFCGWAEGGEEFRCEDWGCGCGFSYEYRPGEPMGMPRRTALVQLLANSEEQTANVYRPLQTM VRNGHLDDLMKVREGFIRLPNGGRIDPVTASARSKLGNPVNFALCDESGVYTKRSGMFEVADTVLRGVTGMDGRMLELTN PWDPMDASFGQSTYESTAKDIMRFFPRHDPNLDFTDRADRRRILEFVYKGSPWVNLDAIEATCEELLPRDPAQARRFFGC ELVQGLGSYMPEALYDDGIDERPYPADDTEICLGFDGSQSGDWSAIRAETVDGYRFTPTYGVDRRPTYWNPVEWEGRIPR SEVDAAVSDLFNHFKVRRFYCDPHLWESLIDDWSVRFGEDVVVQWPTNRTGRMYDALTRFMTDTTDGTTTHSGDPVAKLH MMAARKIAKPGDKYVLGKPSENQKIDIAMADILAHEAASDMRALNWGNDSNRIVVFRW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60552; Mature: 60421
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEHRQPPASLGFLMAAWTRAHCVVPSGYDLNKPFSLVGWQLANAVDFYTVKAGTRFNAS CCCCCCCCHHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCC RPLQGGAFQWRRGQIVGGQKLGKSPFGAAVACFEAVGPCVFCGWAEGGEEFRCEDWGCGC CCCCCCCCEEECCEEECCHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCEEECCCCCCC GFSYEYRPGEPMGMPRRTALVQLLANSEEQTANVYRPLQTMVRNGHLDDLMKVREGFIRL CCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCEEEC PNGGRIDPVTASARSKLGNPVNFALCDESGVYTKRSGMFEVADTVLRGVTGMDGRMLELT CCCCCCCCCCHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHHHHCCCCCCCEEEEEC NPWDPMDASFGQSTYESTAKDIMRFFPRHDPNLDFTDRADRRRILEFVYKGSPWVNLDAI CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHH EATCEELLPRDPAQARRFFGCELVQGLGSYMPEALYDDGIDERPYPADDTEICLGFDGSQ HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCEEEEECCCCC SGDWSAIRAETVDGYRFTPTYGVDRRPTYWNPVEWEGRIPRSEVDAAVSDLFNHFKVRRF CCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEE YCDPHLWESLIDDWSVRFGEDVVVQWPTNRTGRMYDALTRFMTDTTDGTTTHSGDPVAKL ECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH HMMAARKIAKPGDKYVLGKPSENQKIDIAMADILAHEAASDMRALNWGNDSNRIVVFRW HHHHHHHHCCCCCCEEECCCCCCCEEEHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEC >Mature Secondary Structure AEHRQPPASLGFLMAAWTRAHCVVPSGYDLNKPFSLVGWQLANAVDFYTVKAGTRFNAS CCCCCCCHHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCC RPLQGGAFQWRRGQIVGGQKLGKSPFGAAVACFEAVGPCVFCGWAEGGEEFRCEDWGCGC CCCCCCCCEEECCEEECCHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCEEECCCCCCC GFSYEYRPGEPMGMPRRTALVQLLANSEEQTANVYRPLQTMVRNGHLDDLMKVREGFIRL CCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCEEEC PNGGRIDPVTASARSKLGNPVNFALCDESGVYTKRSGMFEVADTVLRGVTGMDGRMLELT CCCCCCCCCCHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHHHHCCCCCCCEEEEEC NPWDPMDASFGQSTYESTAKDIMRFFPRHDPNLDFTDRADRRRILEFVYKGSPWVNLDAI CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHH EATCEELLPRDPAQARRFFGCELVQGLGSYMPEALYDDGIDERPYPADDTEICLGFDGSQ HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCEEEEECCCCC SGDWSAIRAETVDGYRFTPTYGVDRRPTYWNPVEWEGRIPRSEVDAAVSDLFNHFKVRRF CCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEE YCDPHLWESLIDDWSVRFGEDVVVQWPTNRTGRMYDALTRFMTDTTDGTTTHSGDPVAKL ECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH HMMAARKIAKPGDKYVLGKPSENQKIDIAMADILAHEAASDMRALNWGNDSNRIVVFRW HHHHHHHHCCCCCCEEECCCCCCCEEEHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA