| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is spaK [H]
Identifier: 213691892
GI number: 213691892
Start: 1188453
End: 1189817
Strand: Direct
Name: spaK [H]
Synonym: Blon_1004
Alternate gene names: 213691892
Gene position: 1188453-1189817 (Clockwise)
Preceding gene: 213691891
Following gene: 213691895
Centisome position: 41.95
GC content: 46.01
Gene sequence:
>1365_bases ATGGGAACAAAGATGAAGACGACGCTTACAAGAACTTTTTATAGATTTCTTGTATGTCTGCTTTGCGGACTGTGTATGTC CGTAGTCATCCCCTTTGCCTGCATGATGTTCGCCTCCAGCATGGGGCTTGTAACGTTTGCGGATAATGCCGAACGGCAAG CGAAAAATCTGGTGCCGATACTCACCGCAACGCCAGATGTATCAGACGTGTATCTGCCCATTGGGATTAAATACCTTCGG TTGGATAGAAACTATGGATCCATAGATACGAATATGAACGAAGAAGAGAAAGAGAAGGCTCTGGCGTTTGCCGAGACGGG TCTCATAGATGCAGGCGGTAGAACACAGTTCATCTTCATCACTCGAGATGATGGGTACATTGTTCTGCAGTACGTCATAG GTTCTCAGTATCTCAATGCACAGTGCAACAAGTACCTACCGTCTCCGGAGATACTGCTGATTGCTTTGATCATCGCTAAC AGCTTAGGCTTATGCGTCTACTTGACGGTTCATTTCGCCAGAGAGCTGAGAAAAGAATTGACGCCTATATTAGAAGCCAC TAAAGAGATTGAAAATCACAACTTAGATTTTGCTATCAGGCATTCTCGAATACTTGAATTTGAAAACGTGGTTTCATCTT TTGATAGTATGCGAAACAGTTTGAAAGAGTCATTGGAACAGCAGTGGCGAAGTGAACAAGCGCAGAGAGAGCAGATCGCA TCCTTGGCCCATGATCTGAAGACTCCATTGACTGTTATGCAGGGGAACATCGACCTGTTGGATGAGACGACGCTTGACGA AGAACAAAAGCTCTATCTGTCGTATGCGATGAGAAGCTCTGAGCAGATGAGACGGTACATAAAGATGATGATTGATATAT CCCGAACATCCTGCGGATATCAATTGCAGATGGAAGACATATGCTTCCCGGAGTTCTGGAGACATGTCATATCTCAAGCT GAAATCATCTGTAGAGATAAAGGTATTGTGATTCAGCAGACGCAGCACGCTCTTCCGAAACATATAACTGGGGATGGAGT ATTGTTGGAGCGGGCATTGATGAATGTGGTTTCAAATGCCGTAGAGCACTCGCCCGTAGACTCTCCGCTATATATGGATG CGGATGGCCAGGGTGATCACTTGAATGTCTGCATTACGGACTGTGGCTGTGGTTTTTCGCAAGAGGCATTGAAGCACGCG AAAGAGCGTTTCTATATGGCAGACCAGAGCAGAGGCTCCGAACTGCATTATGGGATGGGCCTATATATCGTTGACGTCAT CATAAAACAGCATAGAGGAGAACTGCTCCTCAGTAATTCCGCAGAAACCAAAGGCGCCAGGGTCACGATACGGCTACCAC GATAA
Upstream 100 bases:
>100_bases GCGATGGTTCTACAATTTCGACGCATATAAAAAACATAAGGTCGAAGTTCGAGGAGGCCGGTGTTCAACCAATCGTAACG GTCTGGGGGATAGGCTATAA
Downstream 100 bases:
>100_bases GGGAACGACTCATGCGTCGTTCCCTTATCATATCTCCAAGCGATATTCGGCATGGTGGTCCCGGATTCAACTTAGCCGTC GACTGACGTCGCGGCCGTTG
Product: integral membrane sensor signal transduction histidine kinase
Products: NA
Alternate protein names: Subtilin biosynthesis sensor protein spaK [H]
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MGTKMKTTLTRTFYRFLVCLLCGLCMSVVIPFACMMFASSMGLVTFADNAERQAKNLVPILTATPDVSDVYLPIGIKYLR LDRNYGSIDTNMNEEEKEKALAFAETGLIDAGGRTQFIFITRDDGYIVLQYVIGSQYLNAQCNKYLPSPEILLIALIIAN SLGLCVYLTVHFARELRKELTPILEATKEIENHNLDFAIRHSRILEFENVVSSFDSMRNSLKESLEQQWRSEQAQREQIA SLAHDLKTPLTVMQGNIDLLDETTLDEEQKLYLSYAMRSSEQMRRYIKMMIDISRTSCGYQLQMEDICFPEFWRHVISQA EIICRDKGIVIQQTQHALPKHITGDGVLLERALMNVVSNAVEHSPVDSPLYMDADGQGDHLNVCITDCGCGFSQEALKHA KERFYMADQSRGSELHYGMGLYIVDVIIKQHRGELLLSNSAETKGARVTIRLPR
Sequences:
>Translated_454_residues MGTKMKTTLTRTFYRFLVCLLCGLCMSVVIPFACMMFASSMGLVTFADNAERQAKNLVPILTATPDVSDVYLPIGIKYLR LDRNYGSIDTNMNEEEKEKALAFAETGLIDAGGRTQFIFITRDDGYIVLQYVIGSQYLNAQCNKYLPSPEILLIALIIAN SLGLCVYLTVHFARELRKELTPILEATKEIENHNLDFAIRHSRILEFENVVSSFDSMRNSLKESLEQQWRSEQAQREQIA SLAHDLKTPLTVMQGNIDLLDETTLDEEQKLYLSYAMRSSEQMRRYIKMMIDISRTSCGYQLQMEDICFPEFWRHVISQA EIICRDKGIVIQQTQHALPKHITGDGVLLERALMNVVSNAVEHSPVDSPLYMDADGQGDHLNVCITDCGCGFSQEALKHA KERFYMADQSRGSELHYGMGLYIVDVIIKQHRGELLLSNSAETKGARVTIRLPR >Mature_453_residues GTKMKTTLTRTFYRFLVCLLCGLCMSVVIPFACMMFASSMGLVTFADNAERQAKNLVPILTATPDVSDVYLPIGIKYLRL DRNYGSIDTNMNEEEKEKALAFAETGLIDAGGRTQFIFITRDDGYIVLQYVIGSQYLNAQCNKYLPSPEILLIALIIANS LGLCVYLTVHFARELRKELTPILEATKEIENHNLDFAIRHSRILEFENVVSSFDSMRNSLKESLEQQWRSEQAQREQIAS LAHDLKTPLTVMQGNIDLLDETTLDEEQKLYLSYAMRSSEQMRRYIKMMIDISRTSCGYQLQMEDICFPEFWRHVISQAE IICRDKGIVIQQTQHALPKHITGDGVLLERALMNVVSNAVEHSPVDSPLYMDADGQGDHLNVCITDCGCGFSQEALKHAK ERFYMADQSRGSELHYGMGLYIVDVIIKQHRGELLLSNSAETKGARVTIRLPR
Specific function: Member of the two-component regulatory system spaK/spaR involved in the regulation of the biosynthesis of lantibiotic subtilin. SpaK may function as a membrane-associated protein kinase that phosphorylates spaR in response to environmental signals [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1786600, Length=225, Percent_Identity=26.2222222222222, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1790551, Length=290, Percent_Identity=25.8620689655172, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1790346, Length=251, Percent_Identity=27.0916334661355, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1786783, Length=339, Percent_Identity=24.4837758112094, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1790861, Length=382, Percent_Identity=21.9895287958115, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI145693157, Length=276, Percent_Identity=25.7246376811594, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1786912, Length=275, Percent_Identity=27.6363636363636, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788713, Length=297, Percent_Identity=23.9057239057239, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1787894, Length=344, Percent_Identity=24.4186046511628, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI48994928, Length=226, Percent_Identity=25.2212389380531, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788549, Length=234, Percent_Identity=26.0683760683761, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1789149, Length=238, Percent_Identity=26.890756302521, Blast_Score=63, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR008358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 51484; Mature: 51353
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTKMKTTLTRTFYRFLVCLLCGLCMSVVIPFACMMFASSMGLVTFADNAERQAKNLVPI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCEE LTATPDVSDVYLPIGIKYLRLDRNYGSIDTNMNEEEKEKALAFAETGLIDAGGRTQFIFI EECCCCCCCEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCEEEEEE TRDDGYIVLQYVIGSQYLNAQCNKYLPSPEILLIALIIANSLGLCVYLTVHFARELRKEL EECCCEEEEEEECCCHHHCCHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH TPILEATKEIENHNLDFAIRHSRILEFENVVSSFDSMRNSLKESLEQQWRSEQAQREQIA HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLAHDLKTPLTVMQGNIDLLDETTLDEEQKLYLSYAMRSSEQMRRYIKMMIDISRTSCGY HHHHHHCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCC QLQMEDICFPEFWRHVISQAEIICRDKGIVIQQTQHALPKHITGDGVLLERALMNVVSNA EEEHHCCCCHHHHHHHHHHHHEEECCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHH VEHSPVDSPLYMDADGQGDHLNVCITDCGCGFSQEALKHAKERFYMADQSRGSELHYGMG HHCCCCCCCEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHEECCCCCCCCEECCHH LYIVDVIIKQHRGELLLSNSAETKGARVTIRLPR HHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCC >Mature Secondary Structure GTKMKTTLTRTFYRFLVCLLCGLCMSVVIPFACMMFASSMGLVTFADNAERQAKNLVPI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCEE LTATPDVSDVYLPIGIKYLRLDRNYGSIDTNMNEEEKEKALAFAETGLIDAGGRTQFIFI EECCCCCCCEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCEEEEEE TRDDGYIVLQYVIGSQYLNAQCNKYLPSPEILLIALIIANSLGLCVYLTVHFARELRKEL EECCCEEEEEEECCCHHHCCHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH TPILEATKEIENHNLDFAIRHSRILEFENVVSSFDSMRNSLKESLEQQWRSEQAQREQIA HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLAHDLKTPLTVMQGNIDLLDETTLDEEQKLYLSYAMRSSEQMRRYIKMMIDISRTSCGY HHHHHHCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCC QLQMEDICFPEFWRHVISQAEIICRDKGIVIQQTQHALPKHITGDGVLLERALMNVVSNA EEEHHCCCCHHHHHHHHHHHHEEECCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHH VEHSPVDSPLYMDADGQGDHLNVCITDCGCGFSQEALKHAKERFYMADQSRGSELHYGMG HHCCCCCCCEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHEECCCCCCCCEECCHH LYIVDVIIKQHRGELLLSNSAETKGARVTIRLPR HHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8439156; 8085823 [H]