| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
Click here to switch to the map view.
The map label for this gene is fic [H]
Identifier: 213691871
GI number: 213691871
Start: 1167337
End: 1168104
Strand: Direct
Name: fic [H]
Synonym: Blon_0982
Alternate gene names: 213691871
Gene position: 1167337-1168104 (Clockwise)
Preceding gene: 213691869
Following gene: 213691874
Centisome position: 41.21
GC content: 58.72
Gene sequence:
>768_bases ATGGCGCGTGTCTTCGATCCCTACCTGATTCCGGGAACGAACGTGCTGCGGAACCTTGTGGGCGCCACGGACAAGGATGC GCTGGCGGCTGCGGAGAACGATCTCTGCTCCGCCCGCGCCGCCATTCTGAGAGAGAATCTCCCACCTGCGGAGGGGACGC TGGAACAGCTTCGCCGCATACACCGGTTCCTCTTCCAGGACGTGTACGACTGGGCGGGGGAGATACGAACCATCGACATG GGCAAGGGCGAGGGGCTTCCCTTCCAACCGTTGGAGCTGTTTAGCATAGGGGTGCACTACTCCGAGGGGGTGCTTCGCGG TGACGATCTTCTCAAAGGCCTCGGTCATGAAGAATTCGTGAAGCGTCTGAGCGTCAGCTACAACAACTTCAACATCCTTC ACCCGTTCCGTGAGGGCAACGGACGGACGCAACGCATTTTCTGGGAGATCATCGCGCGCGAGGCCGGCTGGCATTTCGAC TGGGGACTCATCGACAAAAGGACGAACGATCAAGCCTCGATCGCGGGGATGCAGCGAAACGATCTGCGTCCTCTCGAGGA TATGTTCGGGAGAATCGTCAAGCCGGTGTCCGAACCGTTGACCATGTCGAATGACCTGGCCCATCTTGGTGAGTATGCGC AACCGGCGAACAAGGCATACGACATGTCTCCCGCACAGAGACAACATGTGTGCGAGCATTACTCCTATCAGCGTGCCATC GTTCCTCCAGGGCAGGAAAAGCCGAAACTCAGGCACAGGTCGAGATGA
Upstream 100 bases:
>100_bases CGAGGGCCTTCATACGCGATGCCGGAGAATATGCGCGGGGGAGCATCGGCAGCGCCGAGCTTCTTTCCCGCACCCGTCGC CGTTACGGATTGGAGTGACG
Downstream 100 bases:
>100_bases TTTTCGGATAACGCCTCACGTATCTAAGTGTTGCGACGGCAGATGCCGCAACGCTTAGATGCGTGGGCCTGTTCCGTTTG ATGCCGGTCTCCACCGGTTT
Product: filamentation induced by cAMP protein Fic
Products: NA
Alternate protein names: Cell filamentation protein fic [H]
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MARVFDPYLIPGTNVLRNLVGATDKDALAAAENDLCSARAAILRENLPPAEGTLEQLRRIHRFLFQDVYDWAGEIRTIDM GKGEGLPFQPLELFSIGVHYSEGVLRGDDLLKGLGHEEFVKRLSVSYNNFNILHPFREGNGRTQRIFWEIIAREAGWHFD WGLIDKRTNDQASIAGMQRNDLRPLEDMFGRIVKPVSEPLTMSNDLAHLGEYAQPANKAYDMSPAQRQHVCEHYSYQRAI VPPGQEKPKLRHRSR
Sequences:
>Translated_255_residues MARVFDPYLIPGTNVLRNLVGATDKDALAAAENDLCSARAAILRENLPPAEGTLEQLRRIHRFLFQDVYDWAGEIRTIDM GKGEGLPFQPLELFSIGVHYSEGVLRGDDLLKGLGHEEFVKRLSVSYNNFNILHPFREGNGRTQRIFWEIIAREAGWHFD WGLIDKRTNDQASIAGMQRNDLRPLEDMFGRIVKPVSEPLTMSNDLAHLGEYAQPANKAYDMSPAQRQHVCEHYSYQRAI VPPGQEKPKLRHRSR >Mature_254_residues ARVFDPYLIPGTNVLRNLVGATDKDALAAAENDLCSARAAILRENLPPAEGTLEQLRRIHRFLFQDVYDWAGEIRTIDMG KGEGLPFQPLELFSIGVHYSEGVLRGDDLLKGLGHEEFVKRLSVSYNNFNILHPFREGNGRTQRIFWEIIAREAGWHFDW GLIDKRTNDQASIAGMQRNDLRPLEDMFGRIVKPVSEPLTMSNDLAHLGEYAQPANKAYDMSPAQRQHVCEHYSYQRAIV PPGQEKPKLRHRSR
Specific function: Involved in cell filamentation induced by cyclic AMP [H]
COG id: COG2184
COG function: function code D; Protein involved in cell division
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fido domain [H]
Homologues:
Organism=Escherichia coli, GI1789761, Length=193, Percent_Identity=36.2694300518135, Blast_Score=120, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003812 [H]
Pfam domain/function: PF02661 Fic [H]
EC number: NA
Molecular weight: Translated: 29077; Mature: 28946
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARVFDPYLIPGTNVLRNLVGATDKDALAAAENDLCSARAAILRENLPPAEGTLEQLRRI CCCCCCCEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH HRFLFQDVYDWAGEIRTIDMGKGEGLPFQPLELFSIGVHYSEGVLRGDDLLKGLGHEEFV HHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHCCCHHCCCCCCHHHHHHHCCHHHHH KRLSVSYNNFNILHPFREGNGRTQRIFWEIIAREAGWHFDWGLIDKRTNDQASIAGMQRN HHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCC DLRPLEDMFGRIVKPVSEPLTMSNDLAHLGEYAQPANKAYDMSPAQRQHVCEHYSYQRAI CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHCCCCCC VPPGQEKPKLRHRSR CCCCCCCCCHHCCCC >Mature Secondary Structure ARVFDPYLIPGTNVLRNLVGATDKDALAAAENDLCSARAAILRENLPPAEGTLEQLRRI CCCCCCEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH HRFLFQDVYDWAGEIRTIDMGKGEGLPFQPLELFSIGVHYSEGVLRGDDLLKGLGHEEFV HHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHCCCHHCCCCCCHHHHHHHCCHHHHH KRLSVSYNNFNILHPFREGNGRTQRIFWEIIAREAGWHFDWGLIDKRTNDQASIAGMQRN HHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCC DLRPLEDMFGRIVKPVSEPLTMSNDLAHLGEYAQPANKAYDMSPAQRQHVCEHYSYQRAI CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHCCCCCC VPPGQEKPKLRHRSR CCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2403545; 11677609 [H]