| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is nagB [H]
Identifier: 213691773
GI number: 213691773
Start: 1040906
End: 1041718
Strand: Direct
Name: nagB [H]
Synonym: Blon_0881
Alternate gene names: 213691773
Gene position: 1040906-1041718 (Clockwise)
Preceding gene: 213691771
Following gene: 213691774
Centisome position: 36.75
GC content: 63.96
Gene sequence:
>813_bases ATGCCGGAAATCATCATTGTCAAGAACGAAGCCGAGGCCGGTGAGATCTACGGCCGTTGCGTGGCGGACCTGATCAAAGC AAAGCCGGACGCCGTGCTGGGCCTGGCCACTGGTTCCAGCCCGCTGGCCGCCTATCAGGCGCTCGCCAAGATCGTCAAGG ACGAGGCCATTGACGTTTCGGGCGTGCGTGGTTTCGCGCTTGACGAATACATCGGACTGCCGCTGACCCATCCTGAGTCC TATCATGCGACCATCCATCGTACCGTGGTCGAACCGCTCGGCCTGGACCCAGCCAAGGTCCATGTGCCCGGCGACGTACT CAACGGCACTCCGCTCGAAGACGGCGACAAAGTCGCGCTGGCCGGCCCGGCCTATGATCGTGCCATCGAAGCCGCTGGCG GCATCGACGTGCAGATTCTCGGCATCGGCACCGACGGCCACGTCGGCTTCAACGAGCCCGGTTCCTCGCTGGCCTCCGGC ACTCGTGTCAAGACCCTGGCCGAGCAGACCCGCGTCGACAACGCCCGCTTCTTCGACAACGACATCAACCAGGTGCCCAC CCACTGCATCACGCAGGGTATTGGCACGATCATGAAGGCCCGTCACCTCGTGCTGCTGGCGTTCGGTGCCGGCAAGGCTG AAGCCATCGAGGAGACGGTGGAAGGCGGCTTGTCCGCGTTCTGCCCGGCTTCCGCGCTGCAGATGCACCCGCACGCCACG ATTATCGTGGATGAGGAGGCCGCCTCTCGTCTGCGCCACAAGGACTACTATCGCTACGCCTACACCCACAAGCCGGCCTG GCAGGGCATCTGA
Upstream 100 bases:
>100_bases CACATCACCCGGACGTGACAAGGATGTTGCCATTATCCGCAAGACGGGCGGCAGTACAGCGACTCGCATCGGGCGGGCCG CACGGAACTGGAGGAAACCG
Downstream 100 bases:
>100_bases TCCGATCCGTTCGCCCCATTGCTGAGCTTTCGAGCCTGCAAGCGGTCCATCGGGCCGCCTGCAGGCTCGTCTTGAGCGCA AGACGAGCGGACGGGAAACC
Product: glucosamine-6-phosphate deaminase
Products: NA
Alternate protein names: GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase [H]
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MPEIIIVKNEAEAGEIYGRCVADLIKAKPDAVLGLATGSSPLAAYQALAKIVKDEAIDVSGVRGFALDEYIGLPLTHPES YHATIHRTVVEPLGLDPAKVHVPGDVLNGTPLEDGDKVALAGPAYDRAIEAAGGIDVQILGIGTDGHVGFNEPGSSLASG TRVKTLAEQTRVDNARFFDNDINQVPTHCITQGIGTIMKARHLVLLAFGAGKAEAIEETVEGGLSAFCPASALQMHPHAT IIVDEEAASRLRHKDYYRYAYTHKPAWQGI
Sequences:
>Translated_270_residues MPEIIIVKNEAEAGEIYGRCVADLIKAKPDAVLGLATGSSPLAAYQALAKIVKDEAIDVSGVRGFALDEYIGLPLTHPES YHATIHRTVVEPLGLDPAKVHVPGDVLNGTPLEDGDKVALAGPAYDRAIEAAGGIDVQILGIGTDGHVGFNEPGSSLASG TRVKTLAEQTRVDNARFFDNDINQVPTHCITQGIGTIMKARHLVLLAFGAGKAEAIEETVEGGLSAFCPASALQMHPHAT IIVDEEAASRLRHKDYYRYAYTHKPAWQGI >Mature_269_residues PEIIIVKNEAEAGEIYGRCVADLIKAKPDAVLGLATGSSPLAAYQALAKIVKDEAIDVSGVRGFALDEYIGLPLTHPESY HATIHRTVVEPLGLDPAKVHVPGDVLNGTPLEDGDKVALAGPAYDRAIEAAGGIDVQILGIGTDGHVGFNEPGSSLASGT RVKTLAEQTRVDNARFFDNDINQVPTHCITQGIGTIMKARHLVLLAFGAGKAEAIEETVEGGLSAFCPASALQMHPHATI IVDEEAASRLRHKDYYRYAYTHKPAWQGI
Specific function: Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion [H]
COG id: COG0363
COG function: function code G; 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. NagB subfamily [H]
Homologues:
Organism=Homo sapiens, GI13027378, Length=259, Percent_Identity=38.996138996139, Blast_Score=186, Evalue=2e-47, Organism=Homo sapiens, GI19923881, Length=259, Percent_Identity=38.996138996139, Blast_Score=186, Evalue=3e-47, Organism=Escherichia coli, GI1786893, Length=257, Percent_Identity=37.7431906614786, Blast_Score=181, Evalue=4e-47, Organism=Escherichia coli, GI1789530, Length=243, Percent_Identity=30.0411522633745, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI48994958, Length=243, Percent_Identity=25.9259259259259, Blast_Score=75, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17554876, Length=267, Percent_Identity=40.4494382022472, Blast_Score=189, Evalue=1e-48, Organism=Drosophila melanogaster, GI24581960, Length=256, Percent_Identity=39.453125, Blast_Score=175, Evalue=3e-44, Organism=Drosophila melanogaster, GI19920764, Length=256, Percent_Identity=39.453125, Blast_Score=175, Evalue=3e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006148 - InterPro: IPR004547 - InterPro: IPR018321 [H]
Pfam domain/function: PF01182 Glucosamine_iso [H]
EC number: =3.5.99.6 [H]
Molecular weight: Translated: 28678; Mature: 28547
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS01161 GLC_GALNAC_ISOMERASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEIIIVKNEAEAGEIYGRCVADLIKAKPDAVLGLATGSSPLAAYQALAKIVKDEAIDVS CCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC GVRGFALDEYIGLPLTHPESYHATIHRTVVEPLGLDPAKVHVPGDVLNGTPLEDGDKVAL CCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEE AGPAYDRAIEAAGGIDVQILGIGTDGHVGFNEPGSSLASGTRVKTLAEQTRVDNARFFDN ECCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCHHCCC DINQVPTHCITQGIGTIMKARHLVLLAFGAGKAEAIEETVEGGLSAFCPASALQMHPHAT CHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHCCHHHCCCHHHHEECCCEE IIVDEEAASRLRHKDYYRYAYTHKPAWQGI EEECHHHHHHHHHHHHHEEEEECCCCCCCC >Mature Secondary Structure PEIIIVKNEAEAGEIYGRCVADLIKAKPDAVLGLATGSSPLAAYQALAKIVKDEAIDVS CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC GVRGFALDEYIGLPLTHPESYHATIHRTVVEPLGLDPAKVHVPGDVLNGTPLEDGDKVAL CCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEE AGPAYDRAIEAAGGIDVQILGIGTDGHVGFNEPGSSLASGTRVKTLAEQTRVDNARFFDN ECCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCHHCCC DINQVPTHCITQGIGTIMKARHLVLLAFGAGKAEAIEETVEGGLSAFCPASALQMHPHAT CHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHCCHHHCCCHHHHEECCCEE IIVDEEAASRLRHKDYYRYAYTHKPAWQGI EEECHHHHHHHHHHHHHEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA