Definition Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession NC_011593
Length 2,832,748

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The map label for this gene is dtd [H]

Identifier: 213691759

GI number: 213691759

Start: 1018627

End: 1019115

Strand: Direct

Name: dtd [H]

Synonym: Blon_0867

Alternate gene names: 213691759

Gene position: 1018627-1019115 (Clockwise)

Preceding gene: 213691755

Following gene: 213691760

Centisome position: 35.96

GC content: 58.9

Gene sequence:

>489_bases
ATGAAAGTCGTATTGCAACGAGTATCCGAAGCGTCCGTGGACGTGGTCAATGAATTGGGCACGCTGGATCCCACGTTCGA
GCCGCAGCAGATTGGCCCGGGATTCATGATTCTGGTGGGCGTCACCGATGAGGACGGCGACAAGCAGATCGCCTGGCTGG
CCCATAAGATCCTGAATCTCAGGGTGTTCGAGGATGCGCAGGGCAAGATGAACCGTTCGATTCAGGACATCGGCGGCGAG
ATTCTCTCCATCTCGCAGTTCACGCTGTTTGCCGACGTGCACAAGGGCAATCGCCCGAGCTTCATCAAGGCCGGCAAGCC
CGAGCATGCCGATCTCATGTGGATCAAGTTCAACGAGGCGTTGCGCTCCGGGGGAGTACCGGTGAAGGAAGGTCGTTTCG
GCGCGCATATGCGGGTCGGGCTGGTCAATGACGGGCCGGTGACCATCGTCATCGACACCGAGCATGACATGCCTGACGGA
ACACGCTGA

Upstream 100 bases:

>100_bases
TCAACCTTGGCAGAGCGTCCACGGTGCCTCGACCTGCTGGTTGCCGCAGTATTGGCATGGTTCGGTGGTGGTGACTGCAC
ACGTTGTACTGTAGGGAACC

Downstream 100 bases:

>100_bases
ATTGCGATAATGATTTGACATCATATCCCGTTCCCTCCAACATGTTACTAAAGCGCTTTAGTCTCCTGCGGGCGAGGGCG
CATGTCGATATGTTTCCCAT

Product: D-tyrosyl-tRNA(Tyr) deacylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MKVVLQRVSEASVDVVNELGTLDPTFEPQQIGPGFMILVGVTDEDGDKQIAWLAHKILNLRVFEDAQGKMNRSIQDIGGE
ILSISQFTLFADVHKGNRPSFIKAGKPEHADLMWIKFNEALRSGGVPVKEGRFGAHMRVGLVNDGPVTIVIDTEHDMPDG
TR

Sequences:

>Translated_162_residues
MKVVLQRVSEASVDVVNELGTLDPTFEPQQIGPGFMILVGVTDEDGDKQIAWLAHKILNLRVFEDAQGKMNRSIQDIGGE
ILSISQFTLFADVHKGNRPSFIKAGKPEHADLMWIKFNEALRSGGVPVKEGRFGAHMRVGLVNDGPVTIVIDTEHDMPDG
TR
>Mature_162_residues
MKVVLQRVSEASVDVVNELGTLDPTFEPQQIGPGFMILVGVTDEDGDKQIAWLAHKILNLRVFEDAQGKMNRSIQDIGGE
ILSISQFTLFADVHKGNRPSFIKAGKPEHADLMWIKFNEALRSGGVPVKEGRFGAHMRVGLVNDGPVTIVIDTEHDMPDG
TR

Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine [H]

COG id: COG1490

COG function: function code J; D-Tyr-tRNAtyr deacylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DTD family [H]

Homologues:

Organism=Homo sapiens, GI30795227, Length=156, Percent_Identity=44.2307692307692, Blast_Score=112, Evalue=2e-25,
Organism=Escherichia coli, GI1790320, Length=149, Percent_Identity=41.6107382550336, Blast_Score=124, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI115533292, Length=158, Percent_Identity=39.2405063291139, Blast_Score=105, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6319982, Length=158, Percent_Identity=41.7721518987342, Blast_Score=114, Evalue=6e-27,
Organism=Drosophila melanogaster, GI281361569, Length=155, Percent_Identity=39.3548387096774, Blast_Score=114, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003732 [H]

Pfam domain/function: PF02580 Tyr_Deacylase [H]

EC number: NA

Molecular weight: Translated: 17819; Mature: 17819

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVVLQRVSEASVDVVNELGTLDPTFEPQQIGPGFMILVGVTDEDGDKQIAWLAHKILNL
CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHE
RVFEDAQGKMNRSIQDIGGEILSISQFTLFADVHKGNRPSFIKAGKPEHADLMWIKFNEA
EEECCCCCHHCCCHHHCCCCEEEEEEEEEEEEECCCCCCCEEECCCCCCCEEEEEEECHH
LRSGGVPVKEGRFGAHMRVGLVNDGPVTIVIDTEHDMPDGTR
HHHCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKVVLQRVSEASVDVVNELGTLDPTFEPQQIGPGFMILVGVTDEDGDKQIAWLAHKILNL
CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHE
RVFEDAQGKMNRSIQDIGGEILSISQFTLFADVHKGNRPSFIKAGKPEHADLMWIKFNEA
EEECCCCCHHCCCHHHCCCCEEEEEEEEEEEEECCCCCCCEEECCCCCCCEEEEEEECHH
LRSGGVPVKEGRFGAHMRVGLVNDGPVTIVIDTEHDMPDGTR
HHHCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA