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The map label for this gene is cspA [H]

Identifier: 213691595

GI number: 213691595

Start: 801967

End: 802356

Strand: Direct

Name: cspA [H]

Synonym: Blon_0699

Alternate gene names: 213691595

Gene position: 801967-802356 (Clockwise)

Preceding gene: 213691594

Following gene: 213691596

Centisome position: 28.31

GC content: 62.05

Gene sequence:

>390_bases
ATGCCCACCGGTCGAGTTCGTTGGTTTGACGCAGCCAAGGGTTATGGCTTCATCACCAGTGAGGAAGGCAAGGACGTGTT
CCTGCCGGCTCAGGCCCTACCCACTGGCGCCACCACGTTGCGCAAGGGGGCCAAGGTGGAGTATTCCGTGGTGGACGGCC
GTCGTGGGCCGCAGGCCATGGATGTTCGCCTGATCGCCTCCGCTCCCAGCTTGGTCAAGGCCACCCGCCCGAAGGCGGAT
GACATGGCCGCCATCTGCGAGGACCTCATCAAGATGCTTGATGCGGCTGGCAATACGTTGCGCCGTCACCGTTACCCATC
TGCTGCCGACAGCAAAAAGCTGGCCACGTTGCTGCGTGCGGTGGCGGATCAATTCGATGTACAGGACTGA

Upstream 100 bases:

>100_bases
TAAGACTCAGGCGACTCAGCCCAAAGCGTGAGGTCAAGCCCTGTGAGGTAAACTGTACCTTCGGTTTACTATTTCCATTG
AGGATTAAGGAAGGTTCGCA

Downstream 100 bases:

>100_bases
TCTGATCTATGACTGATACCACCGAAACCATCGTGACACCGGACCCTCACGCCATCGCGCGCGCCGTGCTGCTCGAAGTG
GCCGACGAGAGCGATCAGGT

Product: cold-shock DNA-binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MPTGRVRWFDAAKGYGFITSEEGKDVFLPAQALPTGATTLRKGAKVEYSVVDGRRGPQAMDVRLIASAPSLVKATRPKAD
DMAAICEDLIKMLDAAGNTLRRHRYPSAADSKKLATLLRAVADQFDVQD

Sequences:

>Translated_129_residues
MPTGRVRWFDAAKGYGFITSEEGKDVFLPAQALPTGATTLRKGAKVEYSVVDGRRGPQAMDVRLIASAPSLVKATRPKAD
DMAAICEDLIKMLDAAGNTLRRHRYPSAADSKKLATLLRAVADQFDVQD
>Mature_128_residues
PTGRVRWFDAAKGYGFITSEEGKDVFLPAQALPTGATTLRKGAKVEYSVVDGRRGPQAMDVRLIASAPSLVKATRPKADD
MAAICEDLIKMLDAAGNTLRRHRYPSAADSKKLATLLRAVADQFDVQD

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=47.5409836065574, Blast_Score=62, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 13979; Mature: 13848

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTGRVRWFDAAKGYGFITSEEGKDVFLPAQALPTGATTLRKGAKVEYSVVDGRRGPQAM
CCCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCHHHHHCCCCEEEEECCCCCCCCCE
DVRLIASAPSLVKATRPKADDMAAICEDLIKMLDAAGNTLRRHRYPSAADSKKLATLLRA
EEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHH
VADQFDVQD
HHHHHCCCC
>Mature Secondary Structure 
PTGRVRWFDAAKGYGFITSEEGKDVFLPAQALPTGATTLRKGAKVEYSVVDGRRGPQAM
CCCCEEEEECCCCCCEEECCCCCEEEECCCCCCCCHHHHHCCCCEEEEECCCCCCCCCE
DVRLIASAPSLVKATRPKADDMAAICEDLIKMLDAAGNTLRRHRYPSAADSKKLATLLRA
EEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHH
VADQFDVQD
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]