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The map label for this gene is ydcM [C]

Identifier: 213691516

GI number: 213691516

Start: 703726

End: 705030

Strand: Direct

Name: ydcM [C]

Synonym: Blon_0616

Alternate gene names: 213691516

Gene position: 703726-705030 (Clockwise)

Preceding gene: 213691515

Following gene: 213691517

Centisome position: 24.84

GC content: 62.76

Gene sequence:

>1305_bases
ATGCTTGAGGCGGTCAAGGTGGCGCTCGACCCGACGCCACGGCAGGAACGACTCTTGGAGTCCCATGCCGGTGCGGCGCG
GTTCGCGTACAACGCGGGACTGGCGCACGTCAAGGACATGCTTGAACGGCAGGAGAAGCCGGAATGGTCGTACTACGCGC
TGCGCAGGTGGTGGAACGCCAACAAGGACGCCCTCGCCGTCAGCATGGAGACCGGCAAGCCGTGGTGGCCGGAGAACAGC
AAGGAGTCGTACAACAGCGGCCTCGAATCATTGGCCGACGCGCTGAAGAACTTCTCCAAGTCCCGCAAGGGGCAGCGGAA
AGGCCGCAGGATGGGCTTCCCACGTTTCAAATCCAAGGACAAGGCGGTTCCCGGATTCGCGTACACGACGGGCTCGTTTG
GTCTCATTGACTGTGACCCTTATGCGCTGCGGCTCCCGAAGATAGGCCGCGTGCATTGCATGGAGAACGTATCCAAGCGG
GTGGATGGCGCGAAGGTGCTGCGCATGAGCGTATCCCGGCATGCGGGACGCTGGATGGCGAGTTTGACCGTCGAGCGCAA
GGATGGTCCGATGCCCACGCCGCTGAAAGGTGGTAGTGTCGGCATCGATTTGGGTGTGAAACAGCTCGCCACACTGTCAG
ACGGCACCATCATCCGCAATCCACGCGCGTTGGACTCGAACCTCAGACGATTGAGGCGGGAACAGAAGAATCTGAGCCGC
AAACGGAAAGGCTCCAACCGCCGCCGCGAGGCGAGAACGAGGGTCGCGCGTCTGCACGCCCGCGTGGCGGACCTACGCCG
CGACCTACTGGACAAGACCACCACCATGCTCGCCCGCACCTACGCGGACATCAGCATCGAGGACTTGAACGTGGCGGGCA
TGGTGAGAAACCATAGGCTCGCCCGCTCGGTAGAGGACGCCGCGTTCGCGGAGTTCCGCCGACAGCTCGAATACAAGACC
GCACGCACCGGCGCGAGGCTCCACGTCATCGACCGCTGGTATCCAAGCAGCAAGACATGCTCGAACTGCGGGACGGTGAA
AGCCAAACTGTCCCTGTCCGAACGTGTCTACCATTGCGAGGAGTGCGGGCTTGTCATCGACCGCGATCTGAACGCGGCCA
TCAACATCCAAGTCGCCGGGAGTGCCCCGGAGACGTTAAACGCGCGTGGAGGAAGCGGAAGACGGGCTGACGCATCGCGT
CGGGCAACGCGGCATCCTGTGAAACGCGAACCAAGCGGCGGCGTAAGCCGTGTGAGGCTTGGAGCTGGCCTCGGCAATGA
GGCCATGCAGATGACTTCGCTCTAG

Upstream 100 bases:

>100_bases
GTGCGCGACATGACCGAGGTGCTGACCTCGTTCTGCGCACGACTGTACGGGCGTCGTGCCGCCAAGCATAAGACGGATGC
GGCGTTGAGGGCGGCGCGTG

Downstream 100 bases:

>100_bases
CGACAAGCTAAAACAAAGTCATCTACAACGGAGTCTCTAGAGCGAGAAACCGGGCCGGAGCCTGCTATCGGTTTTTCGTA
TAGCGTATTGCGGGCTTTCG

Product: transposase, IS605 OrfB family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MLEAVKVALDPTPRQERLLESHAGAARFAYNAGLAHVKDMLERQEKPEWSYYALRRWWNANKDALAVSMETGKPWWPENS
KESYNSGLESLADALKNFSKSRKGQRKGRRMGFPRFKSKDKAVPGFAYTTGSFGLIDCDPYALRLPKIGRVHCMENVSKR
VDGAKVLRMSVSRHAGRWMASLTVERKDGPMPTPLKGGSVGIDLGVKQLATLSDGTIIRNPRALDSNLRRLRREQKNLSR
KRKGSNRRREARTRVARLHARVADLRRDLLDKTTTMLARTYADISIEDLNVAGMVRNHRLARSVEDAAFAEFRRQLEYKT
ARTGARLHVIDRWYPSSKTCSNCGTVKAKLSLSERVYHCEECGLVIDRDLNAAINIQVAGSAPETLNARGGSGRRADASR
RATRHPVKREPSGGVSRVRLGAGLGNEAMQMTSL

Sequences:

>Translated_434_residues
MLEAVKVALDPTPRQERLLESHAGAARFAYNAGLAHVKDMLERQEKPEWSYYALRRWWNANKDALAVSMETGKPWWPENS
KESYNSGLESLADALKNFSKSRKGQRKGRRMGFPRFKSKDKAVPGFAYTTGSFGLIDCDPYALRLPKIGRVHCMENVSKR
VDGAKVLRMSVSRHAGRWMASLTVERKDGPMPTPLKGGSVGIDLGVKQLATLSDGTIIRNPRALDSNLRRLRREQKNLSR
KRKGSNRRREARTRVARLHARVADLRRDLLDKTTTMLARTYADISIEDLNVAGMVRNHRLARSVEDAAFAEFRRQLEYKT
ARTGARLHVIDRWYPSSKTCSNCGTVKAKLSLSERVYHCEECGLVIDRDLNAAINIQVAGSAPETLNARGGSGRRADASR
RATRHPVKREPSGGVSRVRLGAGLGNEAMQMTSL
>Mature_434_residues
MLEAVKVALDPTPRQERLLESHAGAARFAYNAGLAHVKDMLERQEKPEWSYYALRRWWNANKDALAVSMETGKPWWPENS
KESYNSGLESLADALKNFSKSRKGQRKGRRMGFPRFKSKDKAVPGFAYTTGSFGLIDCDPYALRLPKIGRVHCMENVSKR
VDGAKVLRMSVSRHAGRWMASLTVERKDGPMPTPLKGGSVGIDLGVKQLATLSDGTIIRNPRALDSNLRRLRREQKNLSR
KRKGSNRRREARTRVARLHARVADLRRDLLDKTTTMLARTYADISIEDLNVAGMVRNHRLARSVEDAAFAEFRRQLEYKT
ARTGARLHVIDRWYPSSKTCSNCGTVKAKLSLSERVYHCEECGLVIDRDLNAAINIQVAGSAPETLNARGGSGRRADASR
RATRHPVKREPSGGVSRVRLGAGLGNEAMQMTSL

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=405, Percent_Identity=32.0987654320988, Blast_Score=164, Evalue=8e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 48608; Mature: 48608

Theoretical pI: Translated: 11.11; Mature: 11.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEAVKVALDPTPRQERLLESHAGAARFAYNAGLAHVKDMLERQEKPEWSYYALRRWWNA
CCCCEEEEECCCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCC
NKDALAVSMETGKPWWPENSKESYNSGLESLADALKNFSKSRKGQRKGRRMGFPRFKSKD
CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
KAVPGFAYTTGSFGLIDCDPYALRLPKIGRVHCMENVSKRVDGAKVLRMSVSRHAGRWMA
CCCCCEEEECCCCCEEECCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEE
SLTVERKDGPMPTPLKGGSVGIDLGVKQLATLSDGTIIRNPRALDSNLRRLRREQKNLSR
EEEEECCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHH
KRKGSNRRREARTRVARLHARVADLRRDLLDKTTTMLARTYADISIEDLNVAGMVRNHRL
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHH
ARSVEDAAFAEFRRQLEYKTARTGARLHVIDRWYPSSKTCSNCGTVKAKLSLSERVYHCE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHHHH
ECGLVIDRDLNAAINIQVAGSAPETLNARGGSGRRADASRRATRHPVKREPSGGVSRVRL
HCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEE
GAGLGNEAMQMTSL
CCCCCHHHHHHCCC
>Mature Secondary Structure
MLEAVKVALDPTPRQERLLESHAGAARFAYNAGLAHVKDMLERQEKPEWSYYALRRWWNA
CCCCEEEEECCCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCC
NKDALAVSMETGKPWWPENSKESYNSGLESLADALKNFSKSRKGQRKGRRMGFPRFKSKD
CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
KAVPGFAYTTGSFGLIDCDPYALRLPKIGRVHCMENVSKRVDGAKVLRMSVSRHAGRWMA
CCCCCEEEECCCCCEEECCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEE
SLTVERKDGPMPTPLKGGSVGIDLGVKQLATLSDGTIIRNPRALDSNLRRLRREQKNLSR
EEEEECCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHH
KRKGSNRRREARTRVARLHARVADLRRDLLDKTTTMLARTYADISIEDLNVAGMVRNHRL
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHH
ARSVEDAAFAEFRRQLEYKTARTGARLHVIDRWYPSSKTCSNCGTVKAKLSLSERVYHCE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHHHH
ECGLVIDRDLNAAINIQVAGSAPETLNARGGSGRRADASRRATRHPVKREPSGGVSRVRL
HCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEE
GAGLGNEAMQMTSL
CCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]