| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is nrdD [H]
Identifier: 213691512
GI number: 213691512
Start: 694299
End: 696707
Strand: Direct
Name: nrdD [H]
Synonym: Blon_0612
Alternate gene names: 213691512
Gene position: 694299-696707 (Clockwise)
Preceding gene: 213691509
Following gene: 213691513
Centisome position: 24.51
GC content: 60.27
Gene sequence:
>2409_bases ATGGGTGCACAGGTGTTGGAGGAAATCGTCACCGATAACGAGACCAAGGTGGCCGCCAAGGCCTCCACCGTGCTCGTTGA GAAGCGTGATGGTCGTGTGGTCGACTTCGACCCCATCAACATCATCTCTGCGGTCAAGTCTGCTTTCGGTGACCTGAACA AGGAAGTCGGCCCCGAAGAAGATGCCATGATCCGTGGTTTCGCCAACCAAGTCGAAGGCGAAATCAAGGGGCGTTACGCC GGCCCCGCCAAGATCGAGGACATCCAGAACCTCGTGGAGCACGCCCTCATTGACGCCCACCTGTACGATGTGGCTCGCGC CTACACCAACTACCGTCTCGACAAGGACATTCAGCGTGCCAAGGCCACTGATGTCAACGAGGCCGTTTCCCGCTTCATCA ACCACGACCCGACCCTGATTCACGAGAACGCGAACAAGGATTCCAACGTCTACTCCACCCAGCGTGATCTGCTGGCCGGT GCCGTGTCCAAGGCCGCCGCGTTCAACATGCTGCCGCCGGCGGTGTCCAACGCCCACATGAAGGGCGACATTCACTTCCA CGATGCCGACTACTCGCCGTTCACTGCCCAGTCCAACTGCTCCTTGCCGAACTTCTGGGACATGTTGGCCAATGGCTTCA CTCTTGGCAACGCTCCGATGGCTTCCCCGAAGTCCATCGCCATTGCGGCCACCCAGATTACCCAGATCATGAAGGACGTG GCCTCCAGCCAGTATGGTGGCCAGACCGCCAACCGTGCTGACGAGCATCTTGCCCAGTATGCCAAGAAGGATTACGAGAA GTTCCTCGAGGAAGCTCGTGAGACCATCCCCGACGGCATGCCGGTTGAATTCGCCCGTCGTCAGGTCGAGAGCGCCAAGA GGAACGAGCCCGCCAAGCTGCATTTCGGTTCCCGCGAACCGCTGCCGATGGACACCCCGTTCCACACCGATGTTGACGAA CTTGAGCAGGAGCGTGAAATCCTCGCCAAGATTCGTACCCGCAAGGCCATCTATGATGCCATGCAGACCATGGAATACCA GATCAACTCCAACCGTGTGTCCAACGGCCAGACCCCGTTCGTGACTGTCGGCTTTGGTCTCGGCACCGACTGGTTCTCTC GTGAAGTGCAGCGCGCAATCCTGCTGAACCGTATTCGCGGCCTCGGCAAGGAACACCACACCGCCATCTTCCCGAAGCTC GTCTTTACTGTGCAGCACGGCGTGAACGCCGACCCGGGTGACCCGAACTACGATTTGAAGCAGCTCGCCCTCGAGTCCGC CACCAAGCGCATGTACCCGGATGTGGTGTTCTACGAGAACATCGTCAAGATCACAGGCTCCTTCAAGGCTCCGATGGGTT GCCGCTCCTTCCTGCAGGGTTGGATCAACCCGGAGACCGGCAAGGACGAGGAGGATGGCCGTATGAACCTCGGCGTGGTC ACCGTCAATGTGCCGCGTATCGCCATCGAATCCCACGGTGACAAGGCTCGCTTCTGGAAGCTGTTCGAGGAGCGTATGGA AGTCGCCCATCAGGCCCTCCAGTTCCGCATCATGCGCTGCAAGGAAGCCACCCCGGTCAACGCCCCGACCCTGTTCCGCT TCGGTGCGTTCGGTCGTCTCGGTGCCAACGACAACGTGGACCAGCTGTTCAAGAACGAGCGTGCCACCGTGTCGCTCGGC TACATCGGCCTTGCCGAGACCACCGCGGTCTTCTACGGCAAGAACTGGATTCGCGACCACGGCTGGGATCCGGAAGGCAA GGAGTTCGCGCTGTCCATCGTCAAGCGCATGAACGAGCTGTGCAAGCAGTGGAGCAAAGCGGAGGGCTACCACTATTCCG TGTACTCCACTCCGGCTGAATCCCTGACCGACCGCTTCAACCGCATGGACCGTGAAAAGTTCGGCCGTATCGAAGGCGTG ACTGACCACGACTTCTACACCAACTCCTTCCACTACCCGGTGTGGTTGCAGCCCACCCCGATGGAGAAGCTCAGCTACGA GAAGGACTTCCCGTACTACGCCTCCGGCGGCTTCATCAACTACTGCGAGTACCCGTGCCTGCAGGACAACCCGAAGGCGC TCGAAGCCGTGTGGGATTACGCCTACAACATCGGCATCGGCTACCTGGGCACCAACACCCCGATCGACCACTGCTTCGTG TGCGGCTTCCAGGGCGACTTTGAGCCGACCGAGGAAGGCTTCAAGTGCCCGGAGTGCGGTAACTCCAACCCGGACAAGTG CAACGTCACCAAGCGCACCTGCGGCTACCTCGGCAGCCCGGTCCAGCGCCCGATGGTGCATGGCCGTCACGAGGAGATCG CCCACCGAGTCAAGCACATGAGCGGCGAAACCGGTCGTGTGACGCTGGACGACGGCACCACTCGCGAGTGGTTCGAAGAG GCCAAGTAG
Upstream 100 bases:
>100_bases TCAAGAAAACGACATCAATGTAATTTCGTGTGGCCCACGTCGAGTGCGGCCAAAATGCGGAACTCAGGAGAGTGTTCGCC TTATAGGAAAGGGGTGCCCG
Downstream 100 bases:
>100_bases GGTTATTCGTGAGTGGGCTCCCCTCTCTGAGGGGAGCTGTCAGCAAAGCTGACTGAGGGGAGTCCGAGGAGCTATTCCGA AGCTCCCCTCAGTCGCCTAC
Product: anaerobic ribonucleoside triphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 802; Mature: 801
Protein sequence:
>802_residues MGAQVLEEIVTDNETKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEEDAMIRGFANQVEGEIKGRYA GPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRAKATDVNEAVSRFINHDPTLIHENANKDSNVYSTQRDLLAG AVSKAAAFNMLPPAVSNAHMKGDIHFHDADYSPFTAQSNCSLPNFWDMLANGFTLGNAPMASPKSIAIAATQITQIMKDV ASSQYGGQTANRADEHLAQYAKKDYEKFLEEARETIPDGMPVEFARRQVESAKRNEPAKLHFGSREPLPMDTPFHTDVDE LEQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPFVTVGFGLGTDWFSREVQRAILLNRIRGLGKEHHTAIFPKL VFTVQHGVNADPGDPNYDLKQLALESATKRMYPDVVFYENIVKITGSFKAPMGCRSFLQGWINPETGKDEEDGRMNLGVV TVNVPRIAIESHGDKARFWKLFEERMEVAHQALQFRIMRCKEATPVNAPTLFRFGAFGRLGANDNVDQLFKNERATVSLG YIGLAETTAVFYGKNWIRDHGWDPEGKEFALSIVKRMNELCKQWSKAEGYHYSVYSTPAESLTDRFNRMDREKFGRIEGV TDHDFYTNSFHYPVWLQPTPMEKLSYEKDFPYYASGGFINYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTPIDHCFV CGFQGDFEPTEEGFKCPECGNSNPDKCNVTKRTCGYLGSPVQRPMVHGRHEEIAHRVKHMSGETGRVTLDDGTTREWFEE AK
Sequences:
>Translated_802_residues MGAQVLEEIVTDNETKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEEDAMIRGFANQVEGEIKGRYA GPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRAKATDVNEAVSRFINHDPTLIHENANKDSNVYSTQRDLLAG AVSKAAAFNMLPPAVSNAHMKGDIHFHDADYSPFTAQSNCSLPNFWDMLANGFTLGNAPMASPKSIAIAATQITQIMKDV ASSQYGGQTANRADEHLAQYAKKDYEKFLEEARETIPDGMPVEFARRQVESAKRNEPAKLHFGSREPLPMDTPFHTDVDE LEQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPFVTVGFGLGTDWFSREVQRAILLNRIRGLGKEHHTAIFPKL VFTVQHGVNADPGDPNYDLKQLALESATKRMYPDVVFYENIVKITGSFKAPMGCRSFLQGWINPETGKDEEDGRMNLGVV TVNVPRIAIESHGDKARFWKLFEERMEVAHQALQFRIMRCKEATPVNAPTLFRFGAFGRLGANDNVDQLFKNERATVSLG YIGLAETTAVFYGKNWIRDHGWDPEGKEFALSIVKRMNELCKQWSKAEGYHYSVYSTPAESLTDRFNRMDREKFGRIEGV TDHDFYTNSFHYPVWLQPTPMEKLSYEKDFPYYASGGFINYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTPIDHCFV CGFQGDFEPTEEGFKCPECGNSNPDKCNVTKRTCGYLGSPVQRPMVHGRHEEIAHRVKHMSGETGRVTLDDGTTREWFEE AK >Mature_801_residues GAQVLEEIVTDNETKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEEDAMIRGFANQVEGEIKGRYAG PAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRAKATDVNEAVSRFINHDPTLIHENANKDSNVYSTQRDLLAGA VSKAAAFNMLPPAVSNAHMKGDIHFHDADYSPFTAQSNCSLPNFWDMLANGFTLGNAPMASPKSIAIAATQITQIMKDVA SSQYGGQTANRADEHLAQYAKKDYEKFLEEARETIPDGMPVEFARRQVESAKRNEPAKLHFGSREPLPMDTPFHTDVDEL EQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPFVTVGFGLGTDWFSREVQRAILLNRIRGLGKEHHTAIFPKLV FTVQHGVNADPGDPNYDLKQLALESATKRMYPDVVFYENIVKITGSFKAPMGCRSFLQGWINPETGKDEEDGRMNLGVVT VNVPRIAIESHGDKARFWKLFEERMEVAHQALQFRIMRCKEATPVNAPTLFRFGAFGRLGANDNVDQLFKNERATVSLGY IGLAETTAVFYGKNWIRDHGWDPEGKEFALSIVKRMNELCKQWSKAEGYHYSVYSTPAESLTDRFNRMDREKFGRIEGVT DHDFYTNSFHYPVWLQPTPMEKLSYEKDFPYYASGGFINYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTPIDHCFVC GFQGDFEPTEEGFKCPECGNSNPDKCNVTKRTCGYLGSPVQRPMVHGRHEEIAHRVKHMSGETGRVTLDDGTTREWFEEA K
Specific function: Unknown
COG id: COG1328
COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glycine radical domain [H]
Homologues:
Organism=Escherichia coli, GI1790686, Length=765, Percent_Identity=45.4901960784314, Blast_Score=640, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR012833 [H]
Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 90427; Mature: 90295
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAQVLEEIVTDNETKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEE CCHHHHHHHHCCCCCEEHHHHHEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCH DAMIRGFANQVEGEIKGRYAGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRA HHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH KATDVNEAVSRFINHDPTLIHENANKDSNVYSTQRDLLAGAVSKAAAFNMLPPAVSNAHM HCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE KGDIHFHDADYSPFTAQSNCSLPNFWDMLANGFTLGNAPMASPKSIAIAATQITQIMKDV ECCEEEECCCCCCCCCCCCCCCCHHHHHHHCCEEECCCCCCCCCCEEHHHHHHHHHHHHH ASSQYGGQTANRADEHLAQYAKKDYEKFLEEARETIPDGMPVEFARRQVESAKRNEPAKL HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEE HFGSREPLPMDTPFHTDVDELEQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPF ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE VTVGFGLGTDWFSREVQRAILLNRIRGLGKEHHTAIFPKLVFTVQHGVNADPGDPNYDLK EEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH QLALESATKRMYPDVVFYENIVKITGSFKAPMGCRSFLQGWINPETGKDEEDGRMNLGVV HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEE TVNVPRIAIESHGDKARFWKLFEERMEVAHQALQFRIMRCKEATPVNAPTLFRFGAFGRL EEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCC GANDNVDQLFKNERATVSLGYIGLAETTAVFYGKNWIRDHGWDPEGKEFALSIVKRMNEL CCCCCHHHHHCCCCCEEEEEEEEHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHH CKQWSKAEGYHYSVYSTPAESLTDRFNRMDREKFGRIEGVTDHDFYTNSFHYPVWLQPTP HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCC MEKLSYEKDFPYYASGGFINYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTPIDHCFV HHHHCCCCCCCEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCEEE CGFQGDFEPTEEGFKCPECGNSNPDKCNVTKRTCGYLGSPVQRPMVHGRHEEIAHRVKHM ECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHC SGETGRVTLDDGTTREWFEEAK CCCCCEEEECCCCCHHHHHHCC >Mature Secondary Structure GAQVLEEIVTDNETKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEE CHHHHHHHHCCCCCEEHHHHHEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCH DAMIRGFANQVEGEIKGRYAGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRA HHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH KATDVNEAVSRFINHDPTLIHENANKDSNVYSTQRDLLAGAVSKAAAFNMLPPAVSNAHM HCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE KGDIHFHDADYSPFTAQSNCSLPNFWDMLANGFTLGNAPMASPKSIAIAATQITQIMKDV ECCEEEECCCCCCCCCCCCCCCCHHHHHHHCCEEECCCCCCCCCCEEHHHHHHHHHHHHH ASSQYGGQTANRADEHLAQYAKKDYEKFLEEARETIPDGMPVEFARRQVESAKRNEPAKL HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEE HFGSREPLPMDTPFHTDVDELEQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPF ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE VTVGFGLGTDWFSREVQRAILLNRIRGLGKEHHTAIFPKLVFTVQHGVNADPGDPNYDLK EEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH QLALESATKRMYPDVVFYENIVKITGSFKAPMGCRSFLQGWINPETGKDEEDGRMNLGVV HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEE TVNVPRIAIESHGDKARFWKLFEERMEVAHQALQFRIMRCKEATPVNAPTLFRFGAFGRL EEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCC GANDNVDQLFKNERATVSLGYIGLAETTAVFYGKNWIRDHGWDPEGKEFALSIVKRMNEL CCCCCHHHHHCCCCCEEEEEEEEHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHH CKQWSKAEGYHYSVYSTPAESLTDRFNRMDREKFGRIEGVTDHDFYTNSFHYPVWLQPTP HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCC MEKLSYEKDFPYYASGGFINYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTPIDHCFV HHHHCCCCCCCEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCEEE CGFQGDFEPTEEGFKCPECGNSNPDKCNVTKRTCGYLGSPVQRPMVHGRHEEIAHRVKHM ECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHC SGETGRVTLDDGTTREWFEEAK CCCCCEEEECCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]