| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is gltA2 [H]
Identifier: 213691496
GI number: 213691496
Start: 672661
End: 673953
Strand: Direct
Name: gltA2 [H]
Synonym: Blon_0594
Alternate gene names: 213691496
Gene position: 672661-673953 (Clockwise)
Preceding gene: 213691495
Following gene: 213691499
Centisome position: 23.75
GC content: 58.78
Gene sequence:
>1293_bases ATGGCAACGGCACAACTTGATGTCGATTCGAACAAGTTCAACCTGCCCGTGGTGAAGGCTAGTGCAGGGCCGGATGGCAT CGTCGTTTCCAAGCTGCGCAATGACGGCTGGGTAACGCTCGACCCCGGATTCCTCACCACCGCACAGTGCGAATCGAAAA TCACCTACATCGACGGCAAGCATTCGATCCTGCGCTACCGTGGCTACCCCATCGAGCAGTTGTGCGAGAACTCCGATTTT CTGGAAGTGGCGTGGCTGCTGCGCCACGGCGAGCTGCCGAGCAGGGCTGAGTATGAGCAGTTCTGCGCGGACATCAACCA CAAGACGATGGTTGGCGAAGACTTCCGTACCTTCATGGGTTCGTTCCCGCGCTCCGCTCATCCGATGAGCGTGCTTGCCT CCGCCATCAATGCGCTGGCCACGTTCTATCCGGACACCACCGATATCTCCGACACCGACCAGCTCGATGAGGCCGCCAAG ATCATCATGGCCAAGGCCCGCACGATTGTGTCGTACATCTTCCGCCGTCGTCGCGATGAGCCGATGCTGTACCCCGATTA CGCGCGTGGCTATGTGGACGACTTCCTGCGCATGTGCTTCGCTGTGCCGTACGAGCCGTTCGAATCTGACCCGTTGTATG TGCATGCTTTGGGTCGTTTGTTGATTATTCATGCCGATCATGAGCAGAACTGCTCGACCTCGGTGGTGCGTATCGCCGGT TCCGCCCACGCTAACCTGTATTCGGCGGTGGCCGCTGGTGTCAATGCCCTGTCCGGACCGTTGCACGGTGGCGCGAATGA GGCCGTACTACGCCAATTGAAGGCGATTCGTGATTCCGGCAAGTCTGTGGCCGAGTTCGTGCGTGATGCCAAGGAGGATG GCCAGAAGATCTCCGGCCTTGGCCACCGCGTATACAAGTCGTATGATCCGCGTGCGGCGATTGCCAAGAAGTATCTGGAA AAGATCATGGAGCGCGAAGATACGCAGAAGCTGCCGTCTGACGAGCGCGCGCTGTTCGCTGTGGCCACCGAGCTTGAAGA TATTGCGTTGAACGACGAGTATTTCGTATCGCGCAACCTGTATCCGAACGTCGACTTCTACACGGGCTTGATTTATCGGG CGATCGGCTTCGATCCGGCCATGTTCACCACGCTGTTCGCACTGGGCCGCATTCCCGGTTGGATTGCGCAGTACCGTGAG ATGCTGGCCGACCCGAATACCAAGATCGGCCGCCCACGCCAGGTCTACACCGGTCCGGTCGAGCGCGATTTCGTGCCGAT GGACGAGCGCTAA
Upstream 100 bases:
>100_bases GGCGGTAACACAGAAGACATAAAGTACCGAACACTAGCGTTCGCGAACGCGTGAACGTTAATGTTTGGGGTAAGTGGTTC ATGAAGAGGAAGGTGCGCGA
Downstream 100 bases:
>100_bases ATGCTCTGCGTGGTCCGGTGATGCCGGTTTGTTCGATATGTGGGAGCTGATTGCTCGCTACATGATAATTTGCGTAAGAA ATATTGATTCACCCGAGGGT
Product: citrate synthase I
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 430; Mature: 429
Protein sequence:
>430_residues MATAQLDVDSNKFNLPVVKASAGPDGIVVSKLRNDGWVTLDPGFLTTAQCESKITYIDGKHSILRYRGYPIEQLCENSDF LEVAWLLRHGELPSRAEYEQFCADINHKTMVGEDFRTFMGSFPRSAHPMSVLASAINALATFYPDTTDISDTDQLDEAAK IIMAKARTIVSYIFRRRRDEPMLYPDYARGYVDDFLRMCFAVPYEPFESDPLYVHALGRLLIIHADHEQNCSTSVVRIAG SAHANLYSAVAAGVNALSGPLHGGANEAVLRQLKAIRDSGKSVAEFVRDAKEDGQKISGLGHRVYKSYDPRAAIAKKYLE KIMEREDTQKLPSDERALFAVATELEDIALNDEYFVSRNLYPNVDFYTGLIYRAIGFDPAMFTTLFALGRIPGWIAQYRE MLADPNTKIGRPRQVYTGPVERDFVPMDER
Sequences:
>Translated_430_residues MATAQLDVDSNKFNLPVVKASAGPDGIVVSKLRNDGWVTLDPGFLTTAQCESKITYIDGKHSILRYRGYPIEQLCENSDF LEVAWLLRHGELPSRAEYEQFCADINHKTMVGEDFRTFMGSFPRSAHPMSVLASAINALATFYPDTTDISDTDQLDEAAK IIMAKARTIVSYIFRRRRDEPMLYPDYARGYVDDFLRMCFAVPYEPFESDPLYVHALGRLLIIHADHEQNCSTSVVRIAG SAHANLYSAVAAGVNALSGPLHGGANEAVLRQLKAIRDSGKSVAEFVRDAKEDGQKISGLGHRVYKSYDPRAAIAKKYLE KIMEREDTQKLPSDERALFAVATELEDIALNDEYFVSRNLYPNVDFYTGLIYRAIGFDPAMFTTLFALGRIPGWIAQYRE MLADPNTKIGRPRQVYTGPVERDFVPMDER >Mature_429_residues ATAQLDVDSNKFNLPVVKASAGPDGIVVSKLRNDGWVTLDPGFLTTAQCESKITYIDGKHSILRYRGYPIEQLCENSDFL EVAWLLRHGELPSRAEYEQFCADINHKTMVGEDFRTFMGSFPRSAHPMSVLASAINALATFYPDTTDISDTDQLDEAAKI IMAKARTIVSYIFRRRRDEPMLYPDYARGYVDDFLRMCFAVPYEPFESDPLYVHALGRLLIIHADHEQNCSTSVVRIAGS AHANLYSAVAAGVNALSGPLHGGANEAVLRQLKAIRDSGKSVAEFVRDAKEDGQKISGLGHRVYKSYDPRAAIAKKYLEK IMEREDTQKLPSDERALFAVATELEDIALNDEYFVSRNLYPNVDFYTGLIYRAIGFDPAMFTTLFALGRIPGWIAQYREM LADPNTKIGRPRQVYTGPVERDFVPMDER
Specific function: Tricarboxylic acid cycle. [C]
COG id: COG0372
COG function: function code C; Citrate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the citrate synthase family [H]
Homologues:
Organism=Homo sapiens, GI38327625, Length=384, Percent_Identity=25.78125, Blast_Score=107, Evalue=2e-23, Organism=Escherichia coli, GI1786939, Length=412, Percent_Identity=44.6601941747573, Blast_Score=370, Evalue=1e-104, Organism=Escherichia coli, GI1786527, Length=371, Percent_Identity=29.3800539083558, Blast_Score=162, Evalue=3e-41, Organism=Caenorhabditis elegans, GI17555174, Length=362, Percent_Identity=26.7955801104972, Blast_Score=109, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6319850, Length=336, Percent_Identity=27.3809523809524, Blast_Score=117, Evalue=3e-27, Organism=Saccharomyces cerevisiae, GI6324328, Length=336, Percent_Identity=27.3809523809524, Blast_Score=112, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6325257, Length=413, Percent_Identity=24.2130750605327, Blast_Score=74, Evalue=3e-14, Organism=Drosophila melanogaster, GI24640126, Length=334, Percent_Identity=28.4431137724551, Blast_Score=118, Evalue=9e-27, Organism=Drosophila melanogaster, GI24640124, Length=334, Percent_Identity=28.4431137724551, Blast_Score=118, Evalue=1e-26, Organism=Drosophila melanogaster, GI21356863, Length=352, Percent_Identity=26.9886363636364, Blast_Score=91, Evalue=1e-18,
Paralogues:
None
Copy number: 624 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016142 - InterPro: IPR016143 - InterPro: IPR002020 - InterPro: IPR016141 - InterPro: IPR019810 - InterPro: IPR010953 [H]
Pfam domain/function: PF00285 Citrate_synt [H]
EC number: =2.3.3.1 [H]
Molecular weight: Translated: 48282; Mature: 48151
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATAQLDVDSNKFNLPVVKASAGPDGIVVSKLRNDGWVTLDPGFLTTAQCESKITYIDGK CCCEEEECCCCCCCCEEEEECCCCCCEEEEEECCCCEEEECCCCEEHHHHCCCEEEECCC HSILRYRGYPIEQLCENSDFLEVAWLLRHGELPSRAEYEQFCADINHKTMVGEDFRTFMG CCEEEECCCCHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH SFPRSAHPMSVLASAINALATFYPDTTDISDTDQLDEAAKIIMAKARTIVSYIFRRRRDE CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PMLYPDYARGYVDDFLRMCFAVPYEPFESDPLYVHALGRLLIIHADHEQNCSTSVVRIAG CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEHEEECCEEEEECCCCCCCCCHHHEECC SAHANLYSAVAAGVNALSGPLHGGANEAVLRQLKAIRDSGKSVAEFVRDAKEDGQKISGL CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH GHRVYKSYDPRAAIAKKYLEKIMEREDTQKLPSDERALFAVATELEDIALNDEYFVSRNL HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECCC YPNVDFYTGLIYRAIGFDPAMFTTLFALGRIPGWIAQYREMLADPNTKIGRPRQVYTGPV CCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCEEECCC ERDFVPMDER CCCCCCCCCC >Mature Secondary Structure ATAQLDVDSNKFNLPVVKASAGPDGIVVSKLRNDGWVTLDPGFLTTAQCESKITYIDGK CCEEEECCCCCCCCEEEEECCCCCCEEEEEECCCCEEEECCCCEEHHHHCCCEEEECCC HSILRYRGYPIEQLCENSDFLEVAWLLRHGELPSRAEYEQFCADINHKTMVGEDFRTFMG CCEEEECCCCHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH SFPRSAHPMSVLASAINALATFYPDTTDISDTDQLDEAAKIIMAKARTIVSYIFRRRRDE CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PMLYPDYARGYVDDFLRMCFAVPYEPFESDPLYVHALGRLLIIHADHEQNCSTSVVRIAG CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEHEEECCEEEEECCCCCCCCCHHHEECC SAHANLYSAVAAGVNALSGPLHGGANEAVLRQLKAIRDSGKSVAEFVRDAKEDGQKISGL CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH GHRVYKSYDPRAAIAKKYLEKIMEREDTQKLPSDERALFAVATELEDIALNDEYFVSRNL HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECCC YPNVDFYTGLIYRAIGFDPAMFTTLFALGRIPGWIAQYREMLADPNTKIGRPRQVYTGPV CCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCEEECCC ERDFVPMDER CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]