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The map label for this gene is orn [H]

Identifier: 213691488

GI number: 213691488

Start: 661399

End: 662049

Strand: Direct

Name: orn [H]

Synonym: Blon_0585

Alternate gene names: 213691488

Gene position: 661399-662049 (Clockwise)

Preceding gene: 213691487

Following gene: 213691489

Centisome position: 23.35

GC content: 58.37

Gene sequence:

>651_bases
ATGGTCGACAGCCATGATGCAGAAACTTACAGCGCAAAGGATTCGCGCCTGATTTGGATTGACTGCGAAATGACGGGCTT
GGATATCTTCGGCGGTGACGAACTGGTCGAAGTGTCCGTAGTGCCCACTGATTTCGATTTGAATGTGCTGGATGAAGGTG
TGGATTTCGTTATCAAGCCGAGTCAGAAGGCTGTGGACCATATGAACGACTTCGTGCGCAACATGCACACCCGTTCTGGT
TTGATCAACGAATGGGGGCATGGACTGAGCCTCGAAGAAGCTGAGCAGAAGGTCACCGATTATGTGCTGCGCTTCACTCC
GGAAGGCGTGCGCCCGCTGCTCGCCGGCAACACCATCGGCTCCGACAAGAAGTTCCTCGACCACTACATGCCGGACCTCA
TGAGCCACCTGCATTACCGCAGCGTGGATGTGAGCACCCTGAAGGAGCTCGCCCGCCGCTGGTACCCGGCCGTCTACGAG
AACCGTCCGCCAAAGAACGGCGGCCACCGCGCCCTCGCCGACATCATCGAATCGCTTGACGAGCTGCGTTACTACCGTAA
GGCCTTCATGGCCCCGGTCCCCGGGCCGGACGATGCCGCCTCCAAGGCCATCGCCGCCGACATCGTCTCGACCAGCATCC
TCAATAAGTAG

Upstream 100 bases:

>100_bases
GGCCCTTTTCGCGTATGTGGCTCGAGATAGCTTGTATGCGATGGGGTATAGTCTGAACTGTTCTTGTAATAACGGGTGAC
ATGACGAAAAGAGGCTTACC

Downstream 100 bases:

>100_bases
TCCGCCGTACTTGGCTCCCCTCCCTGAGGGGAGTCTAGAGAGGTTGATATGCGCCAAACCGAAGCCTTGGCCGTTCTGAA
CGCCGGCGCGAACGTGTTCC

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MVDSHDAETYSAKDSRLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDFVIKPSQKAVDHMNDFVRNMHTRSG
LINEWGHGLSLEEAEQKVTDYVLRFTPEGVRPLLAGNTIGSDKKFLDHYMPDLMSHLHYRSVDVSTLKELARRWYPAVYE
NRPPKNGGHRALADIIESLDELRYYRKAFMAPVPGPDDAASKAIAADIVSTSILNK

Sequences:

>Translated_216_residues
MVDSHDAETYSAKDSRLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDFVIKPSQKAVDHMNDFVRNMHTRSG
LINEWGHGLSLEEAEQKVTDYVLRFTPEGVRPLLAGNTIGSDKKFLDHYMPDLMSHLHYRSVDVSTLKELARRWYPAVYE
NRPPKNGGHRALADIIESLDELRYYRKAFMAPVPGPDDAASKAIAADIVSTSILNK
>Mature_216_residues
MVDSHDAETYSAKDSRLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDFVIKPSQKAVDHMNDFVRNMHTRSG
LINEWGHGLSLEEAEQKVTDYVLRFTPEGVRPLLAGNTIGSDKKFLDHYMPDLMSHLHYRSVDVSTLKELARRWYPAVYE
NRPPKNGGHRALADIIESLDELRYYRKAFMAPVPGPDDAASKAIAADIVSTSILNK

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=48.5549132947977, Blast_Score=170, Evalue=8e-43,
Organism=Escherichia coli, GI87082382, Length=181, Percent_Identity=42.5414364640884, Blast_Score=140, Evalue=7e-35,
Organism=Caenorhabditis elegans, GI17557752, Length=179, Percent_Identity=39.6648044692737, Blast_Score=132, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6323088, Length=184, Percent_Identity=33.695652173913, Blast_Score=109, Evalue=3e-25,
Organism=Drosophila melanogaster, GI21355135, Length=174, Percent_Identity=44.2528735632184, Blast_Score=144, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 24280; Mature: 24280

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDSHDAETYSAKDSRLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDFVIKP
CCCCCCCCCCCCCCCEEEEEEEEEECEEEECCCCEEEEEEECCCCCHHHHCCCCCEEECC
SQKAVDHMNDFVRNMHTRSGLINEWGHGLSLEEAEQKVTDYVLRFTPEGVRPLLAGNTIG
CHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCC
SDKKFLDHYMPDLMSHLHYRSVDVSTLKELARRWYPAVYENRPPKNGGHRALADIIESLD
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHH
ELRYYRKAFMAPVPGPDDAASKAIAADIVSTSILNK
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVDSHDAETYSAKDSRLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDFVIKP
CCCCCCCCCCCCCCCEEEEEEEEEECEEEECCCCEEEEEEECCCCCHHHHCCCCCEEECC
SQKAVDHMNDFVRNMHTRSGLINEWGHGLSLEEAEQKVTDYVLRFTPEGVRPLLAGNTIG
CHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCC
SDKKFLDHYMPDLMSHLHYRSVDVSTLKELARRWYPAVYENRPPKNGGHRALADIIESLD
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHH
ELRYYRKAFMAPVPGPDDAASKAIAADIVSTSILNK
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12381787 [H]