BacMap

Definition	Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession	NC_011593
Length	2,832,748

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The map label for this gene is srtF [H]

Identifier: 213691422

GI number: 213691422

Start: 585300

End: 585956

Strand: Direct

Name: srtF [H]

Synonym: Blon_0517

Alternate gene names: 213691422

Gene position: 585300-585956 (Clockwise)

Preceding gene: 213691421

Following gene: 213691423

Centisome position: 20.66

GC content: 58.3

Gene sequence:

>657_bases
ATGCCAGTTATATCGGCGACCAATCTCTCGATTGGGTACAAGAATTCCCCGATTGTCAGTGACATCAACTTGCGGTTGAA
TACGGGTAGGATCGTCTGTCTGCTCGGGGCGAACGGCGCGGGTAAGACCACGTTGATGAAGACGCTGCTCGGGCGGATCA
GGCCCGTGAGCGGGGAGGTCACATACACCGGGACGAACATCAACGAGATGTCCGCGGCGATAGACCATCCCAGTTTCTTT
CCCTACCTGTCTGGTAGGGAGAACGTCGAGGTGGTCTCCGCGTTCTGGGGTCTGGACGTGGACCCGGAGACGGCGTTGAA
CAATGTGGGCATCAACCACGCGGCGCATGGACGGAAGGCGAAGGACTATTCGACGGGTATGACGGAGCGTCTGGAGCTGT
GTCTCACCCTTGTGCCGCATCCGAGGTTTCTGTTCCTCGATGAGCCGCAGAACGGATTGGATCCCGATGGCATAGCCTCC
TTGTCCGAAACGCTTCGCGCCTATCGGGACAGGGGGAACTGCGTCGTCATCTCCACGCATCTGCTTCATGAGATTCAGGG
AGTCCCGGATGAATGCATCGTGATTCGACATGGCCGGGCCGCGCAATTCACGGATCTGACCGGGGTAAACCTCGCGGACC
TGTATCAGGGGAGGTAA

Upstream 100 bases:

>100_bases
GCTTCACCGGTGGAAGCAAGCATTAGCAACGTCCGTCGTAGCATCGTGCGTTCCTAGAGGCAAGCCTTGTCTCTAGGAAC
GCCTTTTTGGAAGGTGGATC

Downstream 100 bases:

>100_bases
AGGTGAGTGCCGTTTCTCCTGTTCGCGCGTTGGTCGCCTATTACTGGAACGTATGGTATTTTCTCGCCGCGGTGTTCGGA
GCCGTGGCGTCCCTTCTGCT

Product: ABC transporter

Products: Zn (II) [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MPVISATNLSIGYKNSPIVSDINLRLNTGRIVCLLGANGAGKTTLMKTLLGRIRPVSGEVTYTGTNINEMSAAIDHPSFF
PYLSGRENVEVVSAFWGLDVDPETALNNVGINHAAHGRKAKDYSTGMTERLELCLTLVPHPRFLFLDEPQNGLDPDGIAS
LSETLRAYRDRGNCVVISTHLLHEIQGVPDECIVIRHGRAAQFTDLTGVNLADLYQGR

Sequences:

>Translated_218_residues
MPVISATNLSIGYKNSPIVSDINLRLNTGRIVCLLGANGAGKTTLMKTLLGRIRPVSGEVTYTGTNINEMSAAIDHPSFF
PYLSGRENVEVVSAFWGLDVDPETALNNVGINHAAHGRKAKDYSTGMTERLELCLTLVPHPRFLFLDEPQNGLDPDGIAS
LSETLRAYRDRGNCVVISTHLLHEIQGVPDECIVIRHGRAAQFTDLTGVNLADLYQGR
>Mature_217_residues
PVISATNLSIGYKNSPIVSDINLRLNTGRIVCLLGANGAGKTTLMKTLLGRIRPVSGEVTYTGTNINEMSAAIDHPSFFP
YLSGRENVEVVSAFWGLDVDPETALNNVGINHAAHGRKAKDYSTGMTERLELCLTLVPHPRFLFLDEPQNGLDPDGIASL
SETLRAYRDRGNCVVISTHLLHEIQGVPDECIVIRHGRAAQFTDLTGVNLADLYQGR

Specific function: Implicated in the export process of the lantibiotic SrtA (Potential) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=212, Percent_Identity=28.7735849056604, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI105990541, Length=203, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI21536376, Length=211, Percent_Identity=31.2796208530806, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI6005701, Length=218, Percent_Identity=27.0642201834862, Blast_Score=83, Evalue=1e-16,
Organism=Homo sapiens, GI27477115, Length=218, Percent_Identity=27.9816513761468, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI150417984, Length=215, Percent_Identity=29.7674418604651, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI27262624, Length=193, Percent_Identity=26.9430051813472, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI27262626, Length=193, Percent_Identity=26.9430051813472, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI27436953, Length=216, Percent_Identity=27.3148148148148, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI116734710, Length=202, Percent_Identity=29.7029702970297, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI153792144, Length=224, Percent_Identity=25, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27881501, Length=201, Percent_Identity=26.865671641791, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI45446740, Length=215, Percent_Identity=26.046511627907, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI30795238, Length=201, Percent_Identity=26.865671641791, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI47078218, Length=215, Percent_Identity=26.046511627907, Blast_Score=72, Evalue=3e-13,
Organism=Escherichia coli, GI1788165, Length=197, Percent_Identity=29.9492385786802, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789864, Length=228, Percent_Identity=27.6315789473684, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI87081791, Length=219, Percent_Identity=25.1141552511416, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788450, Length=215, Percent_Identity=25.1162790697674, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081782, Length=198, Percent_Identity=26.7676767676768, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787041, Length=182, Percent_Identity=31.3186813186813, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788761, Length=221, Percent_Identity=27.6018099547511, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI87082268, Length=217, Percent_Identity=25.8064516129032, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786319, Length=206, Percent_Identity=25.2427184466019, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788210, Length=247, Percent_Identity=23.8866396761134, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790739, Length=209, Percent_Identity=29.1866028708134, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=25.4807692307692, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=25.3393665158371, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787792, Length=228, Percent_Identity=27.1929824561404, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1790467, Length=219, Percent_Identity=26.027397260274, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87081709, Length=212, Percent_Identity=25, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=25, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1789032, Length=219, Percent_Identity=24.2009132420091, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789672, Length=218, Percent_Identity=22.0183486238532, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787105, Length=205, Percent_Identity=25.3658536585366, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787712, Length=207, Percent_Identity=24.6376811594203, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=26.6331658291457, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI2367384, Length=193, Percent_Identity=24.8704663212435, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1786872, Length=219, Percent_Identity=26.4840182648402, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=203, Percent_Identity=29.064039408867, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17565586, Length=207, Percent_Identity=28.5024154589372, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=195, Percent_Identity=28.2051282051282, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=195, Percent_Identity=28.2051282051282, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=195, Percent_Identity=28.2051282051282, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17510237, Length=205, Percent_Identity=27.3170731707317, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI115533608, Length=198, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17552010, Length=176, Percent_Identity=28.9772727272727, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17511077, Length=206, Percent_Identity=25.7281553398058, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=216, Percent_Identity=24.537037037037, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=216, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=3e-15,
Organism=Drosophila melanogaster, GI221500365, Length=207, Percent_Identity=29.951690821256, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI116007184, Length=207, Percent_Identity=29.951690821256, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI28573571, Length=205, Percent_Identity=25.8536585365854, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28573573, Length=189, Percent_Identity=26.984126984127, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI221512771, Length=217, Percent_Identity=29.0322580645161, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24666092, Length=203, Percent_Identity=27.0935960591133, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI28574150, Length=197, Percent_Identity=25.3807106598985, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007328, Length=197, Percent_Identity=25.3807106598985, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24641342, Length=179, Percent_Identity=27.3743016759777, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24643674, Length=200, Percent_Identity=27.5, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24648314, Length=202, Percent_Identity=24.7524752475248, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85725262, Length=185, Percent_Identity=29.7297297297297, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR022501
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 23727; Mature: 23596

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVISATNLSIGYKNSPIVSDINLRLNTGRIVCLLGANGAGKTTLMKTLLGRIRPVSGEV
CCCEECCCEEECCCCCCEEEEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEE
TYTGTNINEMSAAIDHPSFFPYLSGRENVEVVSAFWGLDVDPETALNNVGINHAAHGRKA
EEECCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCC
KDYSTGMTERLELCLTLVPHPRFLFLDEPQNGLDPDGIASLSETLRAYRDRGNCVVISTH
CCHHCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHH
LLHEIQGVPDECIVIRHGRAAQFTDLTGVNLADLYQGR
HHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
PVISATNLSIGYKNSPIVSDINLRLNTGRIVCLLGANGAGKTTLMKTLLGRIRPVSGEV
CCEECCCEEECCCCCCEEEEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEE
TYTGTNINEMSAAIDHPSFFPYLSGRENVEVVSAFWGLDVDPETALNNVGINHAAHGRKA
EEECCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCC
KDYSTGMTERLELCLTLVPHPRFLFLDEPQNGLDPDGIASLSETLRAYRDRGNCVVISTH
CCHHCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHH
LLHEIQGVPDECIVIRHGRAAQFTDLTGVNLADLYQGR
HHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Zn (II) [Periplasm]; H2O; ATP [C]

Specific reaction: Zn (II) [Periplasm] + H2O + ATP = Zn (II) [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]