Definition Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession NC_011593
Length 2,832,748

Click here to switch to the map view.

The map label for this gene is lolD [H]

Identifier: 213691419

GI number: 213691419

Start: 582106

End: 582834

Strand: Direct

Name: lolD [H]

Synonym: Blon_0514

Alternate gene names: 213691419

Gene position: 582106-582834 (Clockwise)

Preceding gene: 213691418

Following gene: 213691420

Centisome position: 20.55

GC content: 67.9

Gene sequence:

>729_bases
ATGAGCACCAGCATCCTGCCCCTCGAAACGGTCGCGGACCCCGTGCCGACACGGCCAATCGACTCCGCGCGGCCCGCGGC
CGGCGGAATACCGTCGGTCACGGGCGAGCACGTGGGCCACCGGTTCGCGGACGGCCCCTGGCTGTTCCGCGACCTTGACT
TCACCCTCACGACCGGCGAGGCCGTCGGCCTGTGCGGGCCGTCCGGCTCTGGCAAATCCACCCTCCTGTCCATCATCGCC
GGCTTCGAGCCGCCCGCCGAAGGAACCATCCGACGCAGCCGGGTCAACCGCGTGCGCTGGGTGTTCCAGAACCCCCACGG
CATGCCACGGCGCACCGCCATCGACCACGTCGTCCAACCACTCCTCGGCCAGGGCATCGACCGCACGCAGGCCGAAGACG
AAGCCATCGCCATCATGAGCACGTTCCACCTGACCAAAGTCGCCGCACGCGAGTTCCGGGAACTATCCGGAGGCGAAGCA
CAGCGTCTCATGCTCGCCCGTGCCATCGCCAGCAAACCCGACCTCCTCCTCGTGGACGAACCCACCGCCCAACTCGACCA
GCGCACCGCCAACGACATCGATTCCACCCTCACCGGACTCGCGCAAGGCGACGCGATCGTCGTCATAGCCACCCACGACC
CCAACACCCGGGCCGCGTGCACCCGCGTCATCGACCTCGCGTGGCACAATCCGAACCCCAACATCGACACCAAGGACGAC
ACACGATGA

Upstream 100 bases:

>100_bases
GAACAAGCCGACGCGACAATCGGCAAAGTCGCCCTCGGCCACAAACTCGACGACATCCAATGCCCCGCCGCAATGCAGCA
CTGACACAAGGAGGACGCGC

Downstream 100 bases:

>100_bases
AACCGACCGCCATCCTGTCCGAAGTATGGCGCAACGTCGCCACCGGCACTACACGTGCCCTCGCCTGCGCCGGCATCCTC
ACCCTCATCGCAGCAGGAAC

Product: ABC transporter

Products: taurine [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSTSILPLETVADPVPTRPIDSARPAAGGIPSVTGEHVGHRFADGPWLFRDLDFTLTTGEAVGLCGPSGSGKSTLLSIIA
GFEPPAEGTIRRSRVNRVRWVFQNPHGMPRRTAIDHVVQPLLGQGIDRTQAEDEAIAIMSTFHLTKVAAREFRELSGGEA
QRLMLARAIASKPDLLLVDEPTAQLDQRTANDIDSTLTGLAQGDAIVVIATHDPNTRAACTRVIDLAWHNPNPNIDTKDD
TR

Sequences:

>Translated_242_residues
MSTSILPLETVADPVPTRPIDSARPAAGGIPSVTGEHVGHRFADGPWLFRDLDFTLTTGEAVGLCGPSGSGKSTLLSIIA
GFEPPAEGTIRRSRVNRVRWVFQNPHGMPRRTAIDHVVQPLLGQGIDRTQAEDEAIAIMSTFHLTKVAAREFRELSGGEA
QRLMLARAIASKPDLLLVDEPTAQLDQRTANDIDSTLTGLAQGDAIVVIATHDPNTRAACTRVIDLAWHNPNPNIDTKDD
TR
>Mature_241_residues
STSILPLETVADPVPTRPIDSARPAAGGIPSVTGEHVGHRFADGPWLFRDLDFTLTTGEAVGLCGPSGSGKSTLLSIIAG
FEPPAEGTIRRSRVNRVRWVFQNPHGMPRRTAIDHVVQPLLGQGIDRTQAEDEAIAIMSTFHLTKVAAREFRELSGGEAQ
RLMLARAIASKPDLLLVDEPTAQLDQRTANDIDSTLTGLAQGDAIVVIATHDPNTRAACTRVIDLAWHNPNPNIDTKDDT
R

Specific function: Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-de

COG id: COG1136

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI46592915, Length=196, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI46592956, Length=196, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI46592898, Length=196, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI46592964, Length=196, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI46592971, Length=196, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI46592978, Length=196, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI9955963, Length=230, Percent_Identity=27.8260869565217, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI11967971, Length=197, Percent_Identity=27.4111675126904, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI215820660, Length=168, Percent_Identity=27.3809523809524, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI20143975, Length=168, Percent_Identity=27.3809523809524, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI9961250, Length=189, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI4505771, Length=189, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI9961252, Length=189, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI255708477, Length=187, Percent_Identity=24.5989304812834, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI10947137, Length=195, Percent_Identity=28.2051282051282, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI27881506, Length=205, Percent_Identity=27.3170731707317, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1786563, Length=188, Percent_Identity=36.7021276595745, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788225, Length=189, Percent_Identity=32.8042328042328, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786703, Length=191, Percent_Identity=32.9842931937173, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI87081834, Length=211, Percent_Identity=30.3317535545024, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787029, Length=184, Percent_Identity=33.695652173913, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1789672, Length=192, Percent_Identity=30.7291666666667, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1789873, Length=194, Percent_Identity=33.5051546391753, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87081791, Length=180, Percent_Identity=30.5555555555556, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787105, Length=194, Percent_Identity=29.3814432989691, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787712, Length=165, Percent_Identity=35.1515151515151, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1787370, Length=180, Percent_Identity=33.8888888888889, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1788506, Length=210, Percent_Identity=33.8095238095238, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788761, Length=209, Percent_Identity=32.0574162679426, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787089, Length=196, Percent_Identity=32.6530612244898, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI87081709, Length=181, Percent_Identity=31.4917127071823, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786872, Length=178, Percent_Identity=31.4606741573034, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1789593, Length=192, Percent_Identity=30.2083333333333, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787164, Length=180, Percent_Identity=32.7777777777778, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1786698, Length=214, Percent_Identity=29.4392523364486, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787041, Length=187, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789891, Length=216, Percent_Identity=30.0925925925926, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787758, Length=171, Percent_Identity=30.4093567251462, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788165, Length=192, Percent_Identity=32.2916666666667, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790544, Length=205, Percent_Identity=29.2682926829268, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786253, Length=162, Percent_Identity=34.5679012345679, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082267, Length=150, Percent_Identity=32.6666666666667, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1786345, Length=200, Percent_Identity=33, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790534, Length=187, Percent_Identity=32.0855614973262, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789962, Length=181, Percent_Identity=28.1767955801105, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789032, Length=180, Percent_Identity=29.4444444444444, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790739, Length=197, Percent_Identity=29.4416243654822, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790162, Length=195, Percent_Identity=29.7435897435897, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367384, Length=168, Percent_Identity=34.5238095238095, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786653, Length=197, Percent_Identity=29.4416243654822, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994883, Length=201, Percent_Identity=27.363184079602, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790467, Length=146, Percent_Identity=30.8219178082192, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786319, Length=204, Percent_Identity=26.4705882352941, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789963, Length=201, Percent_Identity=29.8507462686567, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786398, Length=170, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788644, Length=182, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787759, Length=193, Percent_Identity=28.4974093264249, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789864, Length=202, Percent_Identity=26.7326732673267, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787792, Length=207, Percent_Identity=27.536231884058, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787547, Length=178, Percent_Identity=28.6516853932584, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789751, Length=163, Percent_Identity=31.2883435582822, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786975, Length=174, Percent_Identity=31.0344827586207, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786654, Length=201, Percent_Identity=26.3681592039801, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1788053, Length=205, Percent_Identity=28.2926829268293, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=194, Percent_Identity=27.319587628866, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI115533592, Length=191, Percent_Identity=27.7486910994764, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17559834, Length=198, Percent_Identity=28.2828282828283, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17542146, Length=183, Percent_Identity=26.775956284153, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=180, Percent_Identity=28.8888888888889, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71992285, Length=214, Percent_Identity=26.1682242990654, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=204, Percent_Identity=28.921568627451, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=188, Percent_Identity=26.063829787234, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=202, Percent_Identity=29.7029702970297, Blast_Score=69, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6325030, Length=183, Percent_Identity=32.7868852459016, Blast_Score=65, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6324985, Length=183, Percent_Identity=27.8688524590164, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24642252, Length=195, Percent_Identity=29.7435897435897, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI18859989, Length=195, Percent_Identity=29.7435897435897, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24581191, Length=168, Percent_Identity=27.9761904761905, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24581189, Length=168, Percent_Identity=27.9761904761905, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24581193, Length=168, Percent_Identity=27.9761904761905, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24581195, Length=168, Percent_Identity=27.9761904761905, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI85724864, Length=174, Percent_Identity=29.3103448275862, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24580555, Length=174, Percent_Identity=29.3103448275862, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI85816269, Length=174, Percent_Identity=29.3103448275862, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24580553, Length=174, Percent_Identity=29.3103448275862, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24661270, Length=203, Percent_Identity=25.1231527093596, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21355589, Length=203, Percent_Identity=25.1231527093596, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24641342, Length=185, Percent_Identity=28.6486486486486, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24659289, Length=180, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85724858, Length=170, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85724856, Length=170, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580547, Length=170, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580551, Length=170, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580549, Length=170, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580545, Length=170, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24641565, Length=196, Percent_Identity=29.0816326530612, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24662800, Length=167, Percent_Identity=29.3413173652695, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17136662, Length=185, Percent_Identity=26.4864864864865, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574744, Length=170, Percent_Identity=26.4705882352941, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015854
- InterPro:   IPR003593
- InterPro:   IPR011924 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26076; Mature: 25945

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSTSILPLETVADPVPTRPIDSARPAAGGIPSVTGEHVGHRFADGPWLFRDLDFTLTTGE
CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCEEEECCC
AVGLCGPSGSGKSTLLSIIAGFEPPAEGTIRRSRVNRVRWVFQNPHGMPRRTAIDHVVQP
EEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHH
LLGQGIDRTQAEDEAIAIMSTFHLTKVAAREFRELSGGEAQRLMLARAIASKPDLLLVDE
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEC
PTAQLDQRTANDIDSTLTGLAQGDAIVVIATHDPNTRAACTRVIDLAWHNPNPNIDTKDD
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHEEECCCCCCCCCCCC
TR
CC
>Mature Secondary Structure 
STSILPLETVADPVPTRPIDSARPAAGGIPSVTGEHVGHRFADGPWLFRDLDFTLTTGE
CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCEEEECCC
AVGLCGPSGSGKSTLLSIIAGFEPPAEGTIRRSRVNRVRWVFQNPHGMPRRTAIDHVVQP
EEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHH
LLGQGIDRTQAEDEAIAIMSTFHLTKVAAREFRELSGGEAQRLMLARAIASKPDLLLVDE
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEC
PTAQLDQRTANDIDSTLTGLAQGDAIVVIATHDPNTRAACTRVIDLAWHNPNPNIDTKDD
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHEEECCCCCCCCCCCC
TR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: taurine [Periplasm]; ATP; H2O [C]

Specific reaction: taurine [Periplasm] + ATP + H2O = taurine [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA