BacMap

Definition	Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession	NC_011593
Length	2,832,748

Click here to switch to the map view.

The map label for this gene is nodI [H]

Identifier: 213691392

GI number: 213691392

Start: 555801

End: 556742

Strand: Direct

Name: nodI [H]

Synonym: Blon_0486

Alternate gene names: 213691392

Gene position: 555801-556742 (Clockwise)

Preceding gene: 213691391

Following gene: 213691393

Centisome position: 19.62

GC content: 64.76

Gene sequence:

>942_bases
ATGGACGCCACTGTTGAGGTTCGCGGCCTGGTCAAGCGGTATGCGTCCGGGCCGACGATAGGCCCGATCGATTTCGAGGC
GCAGCCGGGTCAGGTGGTGGCGGTGGCCGGGTCGAATGGTGCGGGAAAGTCCACCACGCTGCGCATGACGCTTGGCCTGT
CCGCTCCCAGCCGGGGACATGCGCTGGTCATGGGCCGCCCGTACGGGCAGTTGGAGCGACCGGGTCTGCAGGTGGGCGTG
TTTCTGGGCGGCCGGTTGGGCGATGAGTCGATGACGGGCCGTGAGTATCTGACGTTCATGGCCGGCATGATGGAATTGCC
CAACGTGCGCCGCCGCGTGCGCCGCGTGCTGCGCGACTGCGGTTTGGAGCGTTGGCCGAAGACACGGATCAAGGGGTATT
CCACGGGTATGCGGCAACGGCTGGGCGTGGCCGGCGCGATCATCGCCGACGCGCCGGTTCTCGTGTTGGACGAGCCGTTC
AACGGATTGGACATCGCCGGCAGACTCTGGCTGCACGACTCGATGCGCCAATGGTCCGCCGCCGGCAAGACCGTCATCCT
CGCGGCCCATGAGATCGACGAACTGCAACGCATCGCCACCCACGTACTGATCATCATGCACGGCAGACAGATGGCCTATG
GGCCGCTCGAACAGGTCATCGCCGACAACGGCGGCAAGTCCGGGACCGTGTTCCGGTTCGCGCCCGATGTGGATGAGACT
CGAAAGGCCATGGTCATCGGCGAATTGGCCATAACCGGAGCCGATCTTCACCTCTCGGATGACGGCTCCTATCTGGCACG
ACAGACGGACGAGGCCGCCGTGTTCGCCATTGCGGCGAGGCATGACGCCACACTGGTCCGTCTGGACCATGCCGAGCCGA
CATTACGTGACGTGATGACCGGCATGATCCGGCAAACCCCGGAAAAGGAACGCGCATCATGA

Upstream 100 bases:

>100_bases
GACGATGAAATGATCGGAGATGAGCTAGGACAGATAGATTCCAGTATCGCGGCATCAGTAAACGCCGGCGATCCGGTATC
TCATCGCGGCAAGACTCGCC

Downstream 100 bases:

>100_bases
ACAGGACGGGACGATGCCTACGACGTTTGATGCTGCTCATGCGCTACGCGGTCTGCCGGCCGGCACCGCTGACTGCTTGG
CTTGGTCTGCCGGTGGCGTT

Product: ABC transporter

Products: NA

Alternate protein names: Nodulation ATP-binding protein I [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDATVEVRGLVKRYASGPTIGPIDFEAQPGQVVAVAGSNGAGKSTTLRMTLGLSAPSRGHALVMGRPYGQLERPGLQVGV
FLGGRLGDESMTGREYLTFMAGMMELPNVRRRVRRVLRDCGLERWPKTRIKGYSTGMRQRLGVAGAIIADAPVLVLDEPF
NGLDIAGRLWLHDSMRQWSAAGKTVILAAHEIDELQRIATHVLIIMHGRQMAYGPLEQVIADNGGKSGTVFRFAPDVDET
RKAMVIGELAITGADLHLSDDGSYLARQTDEAAVFAIAARHDATLVRLDHAEPTLRDVMTGMIRQTPEKERAS

Sequences:

>Translated_313_residues
MDATVEVRGLVKRYASGPTIGPIDFEAQPGQVVAVAGSNGAGKSTTLRMTLGLSAPSRGHALVMGRPYGQLERPGLQVGV
FLGGRLGDESMTGREYLTFMAGMMELPNVRRRVRRVLRDCGLERWPKTRIKGYSTGMRQRLGVAGAIIADAPVLVLDEPF
NGLDIAGRLWLHDSMRQWSAAGKTVILAAHEIDELQRIATHVLIIMHGRQMAYGPLEQVIADNGGKSGTVFRFAPDVDET
RKAMVIGELAITGADLHLSDDGSYLARQTDEAAVFAIAARHDATLVRLDHAEPTLRDVMTGMIRQTPEKERAS
>Mature_313_residues
MDATVEVRGLVKRYASGPTIGPIDFEAQPGQVVAVAGSNGAGKSTTLRMTLGLSAPSRGHALVMGRPYGQLERPGLQVGV
FLGGRLGDESMTGREYLTFMAGMMELPNVRRRVRRVLRDCGLERWPKTRIKGYSTGMRQRLGVAGAIIADAPVLVLDEPF
NGLDIAGRLWLHDSMRQWSAAGKTVILAAHEIDELQRIATHVLIIMHGRQMAYGPLEQVIADNGGKSGTVFRFAPDVDET
RKAMVIGELAITGADLHLSDDGSYLARQTDEAAVFAIAARHDATLVRLDHAEPTLRDVMTGMIRQTPEKERAS

Specific function: Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=243, Percent_Identity=27.9835390946502, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI31657092, Length=191, Percent_Identity=28.7958115183246, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI27881501, Length=210, Percent_Identity=27.6190476190476, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI30795238, Length=210, Percent_Identity=27.6190476190476, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI105990541, Length=218, Percent_Identity=30.2752293577982, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI150417984, Length=214, Percent_Identity=30.3738317757009, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI116734710, Length=219, Percent_Identity=28.7671232876712, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI45446740, Length=188, Percent_Identity=28.1914893617021, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI47078218, Length=188, Percent_Identity=28.1914893617021, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI27262624, Length=193, Percent_Identity=25.3886010362694, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI27262626, Length=193, Percent_Identity=25.3886010362694, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI27436953, Length=190, Percent_Identity=27.3684210526316, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI153792144, Length=209, Percent_Identity=28.2296650717703, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI27477115, Length=209, Percent_Identity=25.3588516746411, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI6005701, Length=210, Percent_Identity=25.2380952380952, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI157502201, Length=225, Percent_Identity=26.2222222222222, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI157502203, Length=225, Percent_Identity=26.2222222222222, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI9955970, Length=283, Percent_Identity=24.7349823321555, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI87081782, Length=219, Percent_Identity=26.9406392694064, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786563, Length=210, Percent_Identity=28.0952380952381, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI48994943, Length=234, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081709, Length=213, Percent_Identity=27.2300469483568, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789032, Length=229, Percent_Identity=26.6375545851528, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788450, Length=220, Percent_Identity=28.1818181818182, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788897, Length=224, Percent_Identity=27.6785714285714, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI48995001, Length=210, Percent_Identity=25.2380952380952, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787164, Length=203, Percent_Identity=31.0344827586207, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790525, Length=231, Percent_Identity=22.5108225108225, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789873, Length=193, Percent_Identity=29.5336787564767, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790739, Length=243, Percent_Identity=24.6913580246914, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788761, Length=212, Percent_Identity=26.4150943396226, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786319, Length=228, Percent_Identity=27.1929824561404, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081791, Length=219, Percent_Identity=25.1141552511416, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786398, Length=214, Percent_Identity=28.0373831775701, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788210, Length=239, Percent_Identity=24.2677824267782, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790467, Length=220, Percent_Identity=25.9090909090909, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789864, Length=238, Percent_Identity=25.6302521008403, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789991, Length=233, Percent_Identity=21.4592274678112, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788644, Length=242, Percent_Identity=26.8595041322314, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787112, Length=212, Percent_Identity=28.3018867924528, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787370, Length=208, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787792, Length=219, Percent_Identity=23.7442922374429, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789593, Length=238, Percent_Identity=22.6890756302521, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786653, Length=230, Percent_Identity=24.7826086956522, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788472, Length=229, Percent_Identity=22.2707423580786, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788165, Length=211, Percent_Identity=26.5402843601896, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87081834, Length=221, Percent_Identity=25.3393665158371, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789962, Length=217, Percent_Identity=24.8847926267281, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI48994997, Length=242, Percent_Identity=23.1404958677686, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1786345, Length=223, Percent_Identity=27.3542600896861, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=270, Percent_Identity=25.1851851851852, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71983523, Length=219, Percent_Identity=28.7671232876712, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71983516, Length=219, Percent_Identity=28.7671232876712, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71983510, Length=219, Percent_Identity=28.7671232876712, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17510237, Length=221, Percent_Identity=25.3393665158371, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI71992290, Length=243, Percent_Identity=25.5144032921811, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI115533608, Length=207, Percent_Identity=27.0531400966184, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17539902, Length=238, Percent_Identity=30.2521008403361, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI115532730, Length=156, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17538654, Length=205, Percent_Identity=30.2439024390244, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17552010, Length=217, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24666092, Length=219, Percent_Identity=26.9406392694064, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI221500365, Length=214, Percent_Identity=31.3084112149533, Blast_Score=85, Evalue=8e-17,
Organism=Drosophila melanogaster, GI17136592, Length=206, Percent_Identity=33.9805825242718, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI116007184, Length=214, Percent_Identity=31.3084112149533, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI221512771, Length=214, Percent_Identity=26.1682242990654, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28573573, Length=225, Percent_Identity=28.4444444444444, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28573571, Length=225, Percent_Identity=28.4444444444444, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28574150, Length=222, Percent_Identity=26.5765765765766, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007328, Length=222, Percent_Identity=26.5765765765766, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=25.8215962441315, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648314, Length=227, Percent_Identity=25.9911894273128, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28571209, Length=222, Percent_Identity=22.972972972973, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI85726357, Length=239, Percent_Identity=24.6861924686192, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24582014, Length=205, Percent_Identity=30.7317073170732, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24582012, Length=205, Percent_Identity=30.7317073170732, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015851
- InterPro:   IPR005978
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 33993; Mature: 33993

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDATVEVRGLVKRYASGPTIGPIDFEAQPGQVVAVAGSNGAGKSTTLRMTLGLSAPSRGH
CCCEEHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCC
ALVMGRPYGQLERPGLQVGVFLGGRLGDESMTGREYLTFMAGMMELPNVRRRVRRVLRDC
EEEEECCCCCCCCCCEEEEEEECCEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHC
GLERWPKTRIKGYSTGMRQRLGVAGAIIADAPVLVLDEPFNGLDIAGRLWLHDSMRQWSA
CCCCCCCHHHCCCCHHHHHHHCCCEEEECCCCEEEEECCCCCCCCEEEEEEHHHHHHHHC
AGKTVILAAHEIDELQRIATHVLIIMHGRQMAYGPLEQVIADNGGKSGTVFRFAPDVDET
CCCEEEEEEHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHCCCCCCCEEEEECCCCCHH
RKAMVIGELAITGADLHLSDDGSYLARQTDEAAVFAIAARHDATLVRLDHAEPTLRDVMT
HHEEEEEEEEEECCEEEECCCCCEEHHCCCCCEEEEEEECCCEEEEEEECCCHHHHHHHH
GMIRQTPEKERAS
HHHHCCCCHHCCC
>Mature Secondary Structure
MDATVEVRGLVKRYASGPTIGPIDFEAQPGQVVAVAGSNGAGKSTTLRMTLGLSAPSRGH
CCCEEHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCC
ALVMGRPYGQLERPGLQVGVFLGGRLGDESMTGREYLTFMAGMMELPNVRRRVRRVLRDC
EEEEECCCCCCCCCCEEEEEEECCEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHC
GLERWPKTRIKGYSTGMRQRLGVAGAIIADAPVLVLDEPFNGLDIAGRLWLHDSMRQWSA
CCCCCCCHHHCCCCHHHHHHHCCCEEEECCCCEEEEECCCCCCCCEEEEEEHHHHHHHHC
AGKTVILAAHEIDELQRIATHVLIIMHGRQMAYGPLEQVIADNGGKSGTVFRFAPDVDET
CCCEEEEEEHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHCCCCCCCEEEEECCCCCHH
RKAMVIGELAITGADLHLSDDGSYLARQTDEAAVFAIAARHDATLVRLDHAEPTLRDVMT
HHEEEEEEEEEECCEEEECCCCCEEHHCCCCCEEEEEEECCCEEEEEEECCCHHHHHHHH
GMIRQTPEKERAS
HHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA