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The map label for this gene is rbsR [H]

Identifier: 213691348

GI number: 213691348

Start: 507438

End: 508550

Strand: Direct

Name: rbsR [H]

Synonym: Blon_0439

Alternate gene names: 213691348

Gene position: 507438-508550 (Clockwise)

Preceding gene: 213691347

Following gene: 213691349

Centisome position: 17.91

GC content: 59.3

Gene sequence:

>1113_bases
GTGGGGAAAGCCGAATCGAACACAAGTCGTACGGTCGGCGCGGTCAAGGCTGCTTCCACTGCATCCCCTGCCTCCGCCAA
GCGTCGAGTCACCCTGCGCGATGTGGCTCAAACCGCTGGAGTGTCTCTCAAAACCGCTTCAAACGTCATTAACGGTTCCG
GCCGCATGACCGATGAAACCCGTGCAAAGGTCGAAGCAGTCGTTAAGGACCTCGGCTACCGCGTCAATGTGGCCGCCCGC
AACCTGAATCGCGACCACACCGGTTTTATTACTCTTGCGGTGCCATCGCTCACTCCGCCGTATCTCGCTGAACTGGCCAA
TCGCACCATTGACGCCGCCCGTCAGCGCGACTACTCCGTATACGTCACCACGTATGCAGAGGGCTCGGCCAAAGGAGCGC
GTGACCTGCTCAAGAACTTCAACTCCACTGTGTCAGACGGCATGATTCTCTCCATGAGCGAGGTGGAGGATATTTCGCCC
GAAGACCTGAAGGTTGATTTCCCGCTGGTTATTGTCGGTGCCCGAACCACATGGGGTGTTGCCGACCACGTGACTCCGGA
CGATGTTGCCGCCGCAGCAACAGCGTCAGGCTACCTATACGATCGAGGTTCTTCTCGTCTCGCCGTAGTGGGCGCACGAG
GCGATTATGATACGGCCGCTTTGTTGCAGGCTGTGGAAGGCAACGCACAACTGCGTTTGCGTGGTGTCATTGAAGAAACG
CGCCGCCGTGGGCTTGAGCTGGATCCTCGTCTGATTGGTAATACCGCTCAGGATTGGACCATCGGCGCTGGCGCTCGTGT
GACTCAGCGACTGATTGATTCCGGCGTGCCGTTCGACGGCGTGGTTGCCTTTAATGATCAGCTGGCCATTGGCGCATTGA
CCGCACTACGCACTGCCGGCTATGAGGTTCCCGCGCAGGTGCAGGTCATCGGCTTCGACAACAACGAGGAAGCCCCATAC
CTGCAAATTCCGCTTACCACCATGGATTCCAGGCTCGACTGGACCGCGCCCACCGCCGTGGACCGCATCCTCGGCCGTAT
CGCTGGAGACATTTCCAAGCCCGAACTGCTCACCGCCGAATCGCAAGTAATCGCCCGCGCCTCCACGCGCTAA

Upstream 100 bases:

>100_bases
ATCAGCCCCTTGAAGGCCGGATATGGCTCGAAAATGGTGCCATGTGGTCCTAAAATAGGTGAGTCGATGGTCTTTCAGAG
ATGAAAACGAGGTATGCACA

Downstream 100 bases:

>100_bases
ACAACATTGTCGTAATGCTGGTGCTGTTGCACGAAGTCGTTGTTGTATAAATGTCCCATGGGGCGGTGATTTCCTCATGG
GGCGGTAGCTGAGAATGGCT

Product: regulatory protein, LacI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MGKAESNTSRTVGAVKAASTASPASAKRRVTLRDVAQTAGVSLKTASNVINGSGRMTDETRAKVEAVVKDLGYRVNVAAR
NLNRDHTGFITLAVPSLTPPYLAELANRTIDAARQRDYSVYVTTYAEGSAKGARDLLKNFNSTVSDGMILSMSEVEDISP
EDLKVDFPLVIVGARTTWGVADHVTPDDVAAAATASGYLYDRGSSRLAVVGARGDYDTAALLQAVEGNAQLRLRGVIEET
RRRGLELDPRLIGNTAQDWTIGAGARVTQRLIDSGVPFDGVVAFNDQLAIGALTALRTAGYEVPAQVQVIGFDNNEEAPY
LQIPLTTMDSRLDWTAPTAVDRILGRIAGDISKPELLTAESQVIARASTR

Sequences:

>Translated_370_residues
MGKAESNTSRTVGAVKAASTASPASAKRRVTLRDVAQTAGVSLKTASNVINGSGRMTDETRAKVEAVVKDLGYRVNVAAR
NLNRDHTGFITLAVPSLTPPYLAELANRTIDAARQRDYSVYVTTYAEGSAKGARDLLKNFNSTVSDGMILSMSEVEDISP
EDLKVDFPLVIVGARTTWGVADHVTPDDVAAAATASGYLYDRGSSRLAVVGARGDYDTAALLQAVEGNAQLRLRGVIEET
RRRGLELDPRLIGNTAQDWTIGAGARVTQRLIDSGVPFDGVVAFNDQLAIGALTALRTAGYEVPAQVQVIGFDNNEEAPY
LQIPLTTMDSRLDWTAPTAVDRILGRIAGDISKPELLTAESQVIARASTR
>Mature_369_residues
GKAESNTSRTVGAVKAASTASPASAKRRVTLRDVAQTAGVSLKTASNVINGSGRMTDETRAKVEAVVKDLGYRVNVAARN
LNRDHTGFITLAVPSLTPPYLAELANRTIDAARQRDYSVYVTTYAEGSAKGARDLLKNFNSTVSDGMILSMSEVEDISPE
DLKVDFPLVIVGARTTWGVADHVTPDDVAAAATASGYLYDRGSSRLAVVGARGDYDTAALLQAVEGNAQLRLRGVIEETR
RRGLELDPRLIGNTAQDWTIGAGARVTQRLIDSGVPFDGVVAFNDQLAIGALTALRTAGYEVPAQVQVIGFDNNEEAPYL
QIPLTTMDSRLDWTAPTAVDRILGRIAGDISKPELLTAESQVIARASTR

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=341, Percent_Identity=26.3929618768328, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1790194, Length=319, Percent_Identity=28.5266457680251, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1789068, Length=349, Percent_Identity=28.6532951289398, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1787948, Length=349, Percent_Identity=27.5071633237822, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1786540, Length=319, Percent_Identity=27.2727272727273, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1788474, Length=325, Percent_Identity=26.4615384615385, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789202, Length=299, Percent_Identity=23.7458193979933, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787906, Length=355, Percent_Identity=23.3802816901408, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI48994940, Length=338, Percent_Identity=23.3727810650888, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39434; Mature: 39303

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKAESNTSRTVGAVKAASTASPASAKRRVTLRDVAQTAGVSLKTASNVINGSGRMTDET
CCCCCCCCCHHHHHEEECCCCCCCHHHHEEHHHHHHHHHCCEEEHHHHHCCCCCCCCHHH
RAKVEAVVKDLGYRVNVAARNLNRDHTGFITLAVPSLTPPYLAELANRTIDAARQRDYSV
HHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
YVTTYAEGSAKGARDLLKNFNSTVSDGMILSMSEVEDISPEDLKVDFPLVIVGARTTWGV
EEEEECCCCCHHHHHHHHHHCCHHCCCEEEEHHHHCCCCCCCEEEECCEEEEECCCCCCC
ADHVTPDDVAAAATASGYLYDRGSSRLAVVGARGDYDTAALLQAVEGNAQLRLRGVIEET
CCCCCHHHHHHHHHHCCEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHHH
RRRGLELDPRLIGNTAQDWTIGAGARVTQRLIDSGVPFDGVVAFNDQLAIGALTALRTAG
HHCCCCCCCHHHCCCCCCCEECCCHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCC
YEVPAQVQVIGFDNNEEAPYLQIPLTTMDSRLDWTAPTAVDRILGRIAGDISKPELLTAE
CCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECH
SQVIARASTR
HHHHHHCCCC
>Mature Secondary Structure 
GKAESNTSRTVGAVKAASTASPASAKRRVTLRDVAQTAGVSLKTASNVINGSGRMTDET
CCCCCCCCHHHHHEEECCCCCCCHHHHEEHHHHHHHHHCCEEEHHHHHCCCCCCCCHHH
RAKVEAVVKDLGYRVNVAARNLNRDHTGFITLAVPSLTPPYLAELANRTIDAARQRDYSV
HHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
YVTTYAEGSAKGARDLLKNFNSTVSDGMILSMSEVEDISPEDLKVDFPLVIVGARTTWGV
EEEEECCCCCHHHHHHHHHHCCHHCCCEEEEHHHHCCCCCCCEEEECCEEEEECCCCCCC
ADHVTPDDVAAAATASGYLYDRGSSRLAVVGARGDYDTAALLQAVEGNAQLRLRGVIEET
CCCCCHHHHHHHHHHCCEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHHH
RRRGLELDPRLIGNTAQDWTIGAGARVTQRLIDSGVPFDGVVAFNDQLAIGALTALRTAG
HHCCCCCCCHHHCCCCCCCEECCCHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCC
YEVPAQVQVIGFDNNEEAPYLQIPLTTMDSRLDWTAPTAVDRILGRIAGDISKPELLTAE
CCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECH
SQVIARASTR
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]