| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is yghZ [H]
Identifier: 213691319
GI number: 213691319
Start: 466602
End: 467612
Strand: Reverse
Name: yghZ [H]
Synonym: Blon_0406
Alternate gene names: 213691319
Gene position: 467612-466602 (Counterclockwise)
Preceding gene: 213691321
Following gene: 213691317
Centisome position: 16.51
GC content: 60.83
Gene sequence:
>1011_bases ATGTTCGAGCCAACCACCACCTACGCTCCCAACCCGCACCGTTACGACACGATGACCTACAACCGTGCCGGCACCTCCGG CCTCAAGTTGCCGGCCGTCTCACTCGGCTTCTGGCACAACTTCGGCGACATCACGCCATTCGACCAGATGAAGTCCCTGG TCTTCACCGCCTTCGACAACGGCATCACCCACTTCGATCTGGCCAACAACTACGGCCCCGAGCCCGGCCAGGCCGAGAAG AACTGCGGCCTGCTGCTCGCCAAGTACTTCAAGCACCACCGCGACGAACTCGTCATCTCCACCAAGGCCGGCTATGAAAT GTGGGCAGGCCCGTATGGCGACCTCGGCAGCCGCAAGTACCTGCTCGCCAGCCTCGACCAGTCGCTCGAACGCTTGGGCT TGGATTATGTGGACATCTTCTACCATCACCACCCGGACCCGGAAACCCCGCTGGAGGAGACCATGGGCGCACTGGCTCAG GCCGTGAACTCCGGCAAGGCCCTGTACGTGGGTCTGTCCAACTACGATGGTCCGACGATGGAGAAGGCCGCCGCGATCCT CACCGACCTGCACGTGCCGTTCATCATCAACCAGAACAAGTACAACATCCTCGACCGCACCGTGGAAAAGAACGGTCTGA AGGAGACGGCTTACAAGCTGGGCAAGGGCCTTATCACCTTCTGCCCGCTGGCTCAGGGCCTGCTGACCAACCGTTATCTG AACGGCATTCCGGCCGACAGCCGCATGGCTCACGATCCGCGATTCCTCAACGATTCCGCTCTGACCGAGAAACTGCACAA GCAGGTCGTGGACCTGAACAATCTGGCCGCCGAACGCGGCCAGACGCTGGCCGAGATGAGCCTGGCATGGCTGCTGCACG ATGGTAAGGTGATCTCCGTGCTGACCGGAGCCTCCAAGCCGCAGCAGATTCTCGACAACATCGACGCCCTCAAGAACACC CACTTCACCGTCGAAGAGCTCAAGCTGATCGACGAGATTTCGGCTCGGTGA
Upstream 100 bases:
>100_bases TAGTATCTAAGAACACTTACGAATACCACTCGATCGGCGTCGGTTTGCCCATCGCAGACCAGCATTCGTAAGAACAAAAA TGACATTGTAAGGAGACTCA
Downstream 100 bases:
>100_bases CCATTTCGGCTCCCTTCGCTGAGGGGAGCCAAGTACCACCTTTAGCGCGTCATCTCTTCGTAGATGCGCTTGCAATCGGG GCAAACCGGGTACTTGGACG
Product: aldo/keto reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 336; Mature: 336
Protein sequence:
>336_residues MFEPTTTYAPNPHRYDTMTYNRAGTSGLKLPAVSLGFWHNFGDITPFDQMKSLVFTAFDNGITHFDLANNYGPEPGQAEK NCGLLLAKYFKHHRDELVISTKAGYEMWAGPYGDLGSRKYLLASLDQSLERLGLDYVDIFYHHHPDPETPLEETMGALAQ AVNSGKALYVGLSNYDGPTMEKAAAILTDLHVPFIINQNKYNILDRTVEKNGLKETAYKLGKGLITFCPLAQGLLTNRYL NGIPADSRMAHDPRFLNDSALTEKLHKQVVDLNNLAAERGQTLAEMSLAWLLHDGKVISVLTGASKPQQILDNIDALKNT HFTVEELKLIDEISAR
Sequences:
>Translated_336_residues MFEPTTTYAPNPHRYDTMTYNRAGTSGLKLPAVSLGFWHNFGDITPFDQMKSLVFTAFDNGITHFDLANNYGPEPGQAEK NCGLLLAKYFKHHRDELVISTKAGYEMWAGPYGDLGSRKYLLASLDQSLERLGLDYVDIFYHHHPDPETPLEETMGALAQ AVNSGKALYVGLSNYDGPTMEKAAAILTDLHVPFIINQNKYNILDRTVEKNGLKETAYKLGKGLITFCPLAQGLLTNRYL NGIPADSRMAHDPRFLNDSALTEKLHKQVVDLNNLAAERGQTLAEMSLAWLLHDGKVISVLTGASKPQQILDNIDALKNT HFTVEELKLIDEISAR >Mature_336_residues MFEPTTTYAPNPHRYDTMTYNRAGTSGLKLPAVSLGFWHNFGDITPFDQMKSLVFTAFDNGITHFDLANNYGPEPGQAEK NCGLLLAKYFKHHRDELVISTKAGYEMWAGPYGDLGSRKYLLASLDQSLERLGLDYVDIFYHHHPDPETPLEETMGALAQ AVNSGKALYVGLSNYDGPTMEKAAAILTDLHVPFIINQNKYNILDRTVEKNGLKETAYKLGKGLITFCPLAQGLLTNRYL NGIPADSRMAHDPRFLNDSALTEKLHKQVVDLNNLAAERGQTLAEMSLAWLLHDGKVISVLTGASKPQQILDNIDALKNT HFTVEELKLIDEISAR
Specific function: Unknown
COG id: COG0667
COG function: function code C; Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI27436969, Length=308, Percent_Identity=36.3636363636364, Blast_Score=176, Evalue=2e-44, Organism=Homo sapiens, GI4504825, Length=306, Percent_Identity=36.2745098039216, Blast_Score=174, Evalue=8e-44, Organism=Homo sapiens, GI27436962, Length=321, Percent_Identity=32.7102803738318, Blast_Score=169, Evalue=3e-42, Organism=Homo sapiens, GI27436964, Length=327, Percent_Identity=31.8042813455657, Blast_Score=169, Evalue=4e-42, Organism=Homo sapiens, GI27436966, Length=321, Percent_Identity=32.398753894081, Blast_Score=166, Evalue=2e-41, Organism=Homo sapiens, GI27436971, Length=322, Percent_Identity=31.9875776397516, Blast_Score=156, Evalue=3e-38, Organism=Escherichia coli, GI1789375, Length=329, Percent_Identity=54.4072948328268, Blast_Score=363, Evalue=1e-102, Organism=Escherichia coli, GI87081735, Length=314, Percent_Identity=30.8917197452229, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1789199, Length=357, Percent_Identity=30.5322128851541, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1788070, Length=330, Percent_Identity=28.1818181818182, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1786400, Length=162, Percent_Identity=34.5679012345679, Blast_Score=65, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6325169, Length=339, Percent_Identity=28.023598820059, Blast_Score=94, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6323998, Length=327, Percent_Identity=25.9938837920489, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6319958, Length=302, Percent_Identity=26.4900662251656, Blast_Score=80, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6322615, Length=252, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6319951, Length=295, Percent_Identity=26.4406779661017, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI24640980, Length=325, Percent_Identity=25.8461538461538, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI45549126, Length=325, Percent_Identity=25.8461538461538, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24646155, Length=326, Percent_Identity=27.9141104294479, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24646159, Length=238, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR005399 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: NA
Molecular weight: Translated: 37413; Mature: 37413
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFEPTTTYAPNPHRYDTMTYNRAGTSGLKLPAVSLGFWHNFGDITPFDQMKSLVFTAFDN CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEHHCCCCCCCCCHHHHHHHHHHHHCC GITHFDLANNYGPEPGQAEKNCGLLLAKYFKHHRDELVISTKAGYEMWAGPYGDLGSRKY CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHH LLASLDQSLERLGLDYVDIFYHHHPDPETPLEETMGALAQAVNSGKALYVGLSNYDGPTM HHHHHHHHHHHHCCCCEEEHEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHH EKAAAILTDLHVPFIINQNKYNILDRTVEKNGLKETAYKLGKGLITFCPLAQGLLTNRYL HHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH NGIPADSRMAHDPRFLNDSALTEKLHKQVVDLNNLAAERGQTLAEMSLAWLLHDGKVISV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEE LTGASKPQQILDNIDALKNTHFTVEELKLIDEISAR EECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MFEPTTTYAPNPHRYDTMTYNRAGTSGLKLPAVSLGFWHNFGDITPFDQMKSLVFTAFDN CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEHHCCCCCCCCCHHHHHHHHHHHHCC GITHFDLANNYGPEPGQAEKNCGLLLAKYFKHHRDELVISTKAGYEMWAGPYGDLGSRKY CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHH LLASLDQSLERLGLDYVDIFYHHHPDPETPLEETMGALAQAVNSGKALYVGLSNYDGPTM HHHHHHHHHHHHCCCCEEEHEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHH EKAAAILTDLHVPFIINQNKYNILDRTVEKNGLKETAYKLGKGLITFCPLAQGLLTNRYL HHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH NGIPADSRMAHDPRFLNDSALTEKLHKQVVDLNNLAAERGQTLAEMSLAWLLHDGKVISV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEE LTGASKPQQILDNIDALKNTHFTVEELKLIDEISAR EECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]