| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213691315
Identifier: 213691315
GI number: 213691315
Start: 463882
End: 464511
Strand: Reverse
Name: 213691315
Synonym: Blon_0402
Alternate gene names: NA
Gene position: 464511-463882 (Counterclockwise)
Preceding gene: 213691316
Following gene: 213691314
Centisome position: 16.4
GC content: 61.11
Gene sequence:
>630_bases ATGGCACGAGTTGAAGATTCCCCGTGGGCCATTCCGGTAGCGCAGATTGCTTCGCGCGCCGGTCAATCCAAGCCGATTGA CGCCGATTTCCCAGCACCTTCCGGCATTGGCGACAGCATTGTCGGCATCAAGGAAGGTGAGCCCGTACACGTGAGCGGGC AGTTCGATTCGATTGTGGACGGCCTGATCTTCACCGGCCGCCTGGTCGCGCCATTCGTCAGCGAGTGCACGCGCTGCCTG AAGCCGATTGACGAGGACTGGCCGGTTGATGTGACGGTGTTCTTCCCGTATGAGTCGGGTCAGGACAAGGCCAACGGCAA GGGTGGCAAGAACAAGAAGGACGACGAGATCGACATCATCGCCGGCGAGGACGAATCGGAAGACACGTATCCGCTGCTGG AGAACGGCGCATTCGCGGACATCGAGGCGATGATCCGCGACACGCTGGTCGAATCGCTGCCGTTGCAGCCACTGTGCCGA CCGGATTGCAAGGGTCTGTGCTCGCAGTGCGGTGCCGATCTGAACGAGGATCCCGATCATCATCACGATGTGACGGATAT CCGTTTCGCCGGATTGGCGGGGCTCAAAGCCCAGCTCGAGGCCGAGCAGAACGGCGAGCAGGCCGAGTGA
Upstream 100 bases:
>100_bases CAACGCCGGCAACATCAGCAACGCCGGCAACATCAGTAACGCGAATAACGCCAGTAACGAATAACTCCAGCCAACATACG AAAGGCACCAAGAACATACC
Downstream 100 bases:
>100_bases CGCGCGCCTGAACGGAGTTTGTACGAGCCGTGCGTTAAGATAACGGACGCTTAAGCTCAATTGTTCGAACGAAATAGAGG ATACTCAAATGGCACTGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MARVEDSPWAIPVAQIASRAGQSKPIDADFPAPSGIGDSIVGIKEGEPVHVSGQFDSIVDGLIFTGRLVAPFVSECTRCL KPIDEDWPVDVTVFFPYESGQDKANGKGGKNKKDDEIDIIAGEDESEDTYPLLENGAFADIEAMIRDTLVESLPLQPLCR PDCKGLCSQCGADLNEDPDHHHDVTDIRFAGLAGLKAQLEAEQNGEQAE
Sequences:
>Translated_209_residues MARVEDSPWAIPVAQIASRAGQSKPIDADFPAPSGIGDSIVGIKEGEPVHVSGQFDSIVDGLIFTGRLVAPFVSECTRCL KPIDEDWPVDVTVFFPYESGQDKANGKGGKNKKDDEIDIIAGEDESEDTYPLLENGAFADIEAMIRDTLVESLPLQPLCR PDCKGLCSQCGADLNEDPDHHHDVTDIRFAGLAGLKAQLEAEQNGEQAE >Mature_208_residues ARVEDSPWAIPVAQIASRAGQSKPIDADFPAPSGIGDSIVGIKEGEPVHVSGQFDSIVDGLIFTGRLVAPFVSECTRCLK PIDEDWPVDVTVFFPYESGQDKANGKGGKNKKDDEIDIIAGEDESEDTYPLLENGAFADIEAMIRDTLVESLPLQPLCRP DCKGLCSQCGADLNEDPDHHHDVTDIRFAGLAGLKAQLEAEQNGEQAE
Specific function: Unknown
COG id: COG1399
COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.leprae ML1660 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003772 [H]
Pfam domain/function: PF02620 DUF177 [H]
EC number: NA
Molecular weight: Translated: 22507; Mature: 22376
Theoretical pI: Translated: 4.02; Mature: 4.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARVEDSPWAIPVAQIASRAGQSKPIDADFPAPSGIGDSIVGIKEGEPVHVSGQFDSIVD CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCHHHHHH GLIFTGRLVAPFVSECTRCLKPIDEDWPVDVTVFFPYESGQDKANGKGGKNKKDDEIDII HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEE AGEDESEDTYPLLENGAFADIEAMIRDTLVESLPLQPLCRPDCKGLCSQCGADLNEDPDH ECCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCC HHDVTDIRFAGLAGLKAQLEAEQNGEQAE CCCCCHHHHHHHHCCHHHHHHHCCCCCCC >Mature Secondary Structure ARVEDSPWAIPVAQIASRAGQSKPIDADFPAPSGIGDSIVGIKEGEPVHVSGQFDSIVD CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCHHHHHH GLIFTGRLVAPFVSECTRCLKPIDEDWPVDVTVFFPYESGQDKANGKGGKNKKDDEIDII HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEE AGEDESEDTYPLLENGAFADIEAMIRDTLVESLPLQPLCRPDCKGLCSQCGADLNEDPDH ECCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCC HHDVTDIRFAGLAGLKAQLEAEQNGEQAE CCCCCHHHHHHHHCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]