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The map label for this gene is yhdY [H]

Identifier: 213691243

GI number: 213691243

Start: 378253

End: 379050

Strand: Reverse

Name: yhdY [H]

Synonym: Blon_0326

Alternate gene names: 213691243

Gene position: 379050-378253 (Counterclockwise)

Preceding gene: 213691244

Following gene: 213691233

Centisome position: 13.38

GC content: 61.15

Gene sequence:

>798_bases
ATGACCGAATATGCACAAGACATCGCACACTGGTTCCAGGTCAATGCGGGCAAGCTCATCTGGCTGGCCGTCGTGCTGGC
CGTCGTGTTCGCGGCCGATCGCGTGATCAGCCGCGTGCTGCGCAGGGTTCTGGATAGTTCGCAGATTCCCAGCGCCTCGA
TTTTCGTGAATCTCACGCGCGTGACCATCTGGGTCACCGGTACGGCGATGGTGCTGCAACCGGTGTTCGGCATCAATCCG
ACCACCCTGGTCACCGCCCTTGGTGTTGGAGGTGTGGCGATCTCGCTGGGTCTGAAGGATACAATCGCCAACATCATCGG
CGGCTTCGGCCTGATGCTGGGCCGCGTAATCCAACCCGGCGATCTGGTGACCATTCAAGGCGTCACAGGTACCGTGCACG
ACATCACCTGGCGTCAGACCGTAGTGCGCACCCGCTCCGGGGACATGATGGTCATCCCCAATTCGGTACTCAATACCGCC
GCCCTGACCAAGCTCACGCCGGTCAGCGAAGGCATGGCCACGCTTGAATTCACGGCCAAGGCCTCCGGCGACCCGTCCGC
TATCAGTCAGGATATTCTCGACCGCGTAACCAAAGCCACCGCCGACGTGGCACTGGAGGGCCAGCCACCGCTGGTCAAGT
TCACCGGCTTCTCCCCTTACGGCATGACCGGCCAAGTGCTTGTGTTCGCGCGCGAGGGTGTACTGCCTTCCACCATCAAA
GATATGGCGGCGCGAGCCATCGCCGGCTCGGGCACCAAATACCTTGTTGAAGATGGCGGCTCGTCAGACAATCTGTGA

Upstream 100 bases:

>100_bases
ACCACCGGTATCGCACCACCAGCACCACCGCAACGGCCAAAACCCGACGTGGGCCCGCATGTTTACGACTTCACCAGAAA
TGGTCGATACAGTAGGGCAT

Downstream 100 bases:

>100_bases
TATCTCCCGGCTCGCCTCTCTGGGTCCGGCTATGACAGTCATGCGAACAGCATCCAACCGGTGAGAATCACAGTCAACAG
TAGGTACGAGATAACGCCGG

Product: MscS Mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTEYAQDIAHWFQVNAGKLIWLAVVLAVVFAADRVISRVLRRVLDSSQIPSASIFVNLTRVTIWVTGTAMVLQPVFGINP
TTLVTALGVGGVAISLGLKDTIANIIGGFGLMLGRVIQPGDLVTIQGVTGTVHDITWRQTVVRTRSGDMMVIPNSVLNTA
ALTKLTPVSEGMATLEFTAKASGDPSAISQDILDRVTKATADVALEGQPPLVKFTGFSPYGMTGQVLVFAREGVLPSTIK
DMAARAIAGSGTKYLVEDGGSSDNL

Sequences:

>Translated_265_residues
MTEYAQDIAHWFQVNAGKLIWLAVVLAVVFAADRVISRVLRRVLDSSQIPSASIFVNLTRVTIWVTGTAMVLQPVFGINP
TTLVTALGVGGVAISLGLKDTIANIIGGFGLMLGRVIQPGDLVTIQGVTGTVHDITWRQTVVRTRSGDMMVIPNSVLNTA
ALTKLTPVSEGMATLEFTAKASGDPSAISQDILDRVTKATADVALEGQPPLVKFTGFSPYGMTGQVLVFAREGVLPSTIK
DMAARAIAGSGTKYLVEDGGSSDNL
>Mature_264_residues
TEYAQDIAHWFQVNAGKLIWLAVVLAVVFAADRVISRVLRRVLDSSQIPSASIFVNLTRVTIWVTGTAMVLQPVFGINPT
TLVTALGVGGVAISLGLKDTIANIIGGFGLMLGRVIQPGDLVTIQGVTGTVHDITWRQTVVRTRSGDMMVIPNSVLNTAA
LTKLTPVSEGMATLEFTAKASGDPSAISQDILDRVTKATADVALEGQPPLVKFTGFSPYGMTGQVLVFAREGVLPSTIKD
MAARAIAGSGTKYLVEDGGSSDNL

Specific function: May play a role in resistance to osmotic downshock [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 27927; Mature: 27796

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEYAQDIAHWFQVNAGKLIWLAVVLAVVFAADRVISRVLRRVLDSSQIPSASIFVNLTR
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
VTIWVTGTAMVLQPVFGINPTTLVTALGVGGVAISLGLKDTIANIIGGFGLMLGRVIQPG
EEEEEECHHHHHHHHCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCC
DLVTIQGVTGTVHDITWRQTVVRTRSGDMMVIPNSVLNTAALTKLTPVSEGMATLEFTAK
CEEEEECCCCCHHHHHHHHHHHEECCCCEEEECHHHHHHHHHHHCCCCCCCCEEEEEEEC
ASGDPSAISQDILDRVTKATADVALEGQPPLVKFTGFSPYGMTGQVLVFAREGVLPSTIK
CCCCHHHHHHHHHHHHHHHHHCEEECCCCCEEEECCCCCCCCCCEEEEEEECCCCHHHHH
DMAARAIAGSGTKYLVEDGGSSDNL
HHHHHHHCCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
TEYAQDIAHWFQVNAGKLIWLAVVLAVVFAADRVISRVLRRVLDSSQIPSASIFVNLTR
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
VTIWVTGTAMVLQPVFGINPTTLVTALGVGGVAISLGLKDTIANIIGGFGLMLGRVIQPG
EEEEEECHHHHHHHHCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCC
DLVTIQGVTGTVHDITWRQTVVRTRSGDMMVIPNSVLNTAALTKLTPVSEGMATLEFTAK
CEEEEECCCCCHHHHHHHHHHHEECCCCEEEECHHHHHHHHHHHCCCCCCCCEEEEEEEC
ASGDPSAISQDILDRVTKATADVALEGQPPLVKFTGFSPYGMTGQVLVFAREGVLPSTIK
CCCCHHHHHHHHHHHHHHHHHCEEECCCCCEEEECCCCCCCCCCEEEEEEECCCCHHHHH
DMAARAIAGSGTKYLVEDGGSSDNL
HHHHHHHCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]