| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
Click here to switch to the map view.
The map label for this gene is 213691228
Identifier: 213691228
GI number: 213691228
Start: 361685
End: 362455
Strand: Direct
Name: 213691228
Synonym: Blon_0311
Alternate gene names: NA
Gene position: 361685-362455 (Clockwise)
Preceding gene: 213691227
Following gene: 213691230
Centisome position: 12.77
GC content: 58.24
Gene sequence:
>771_bases ATGCGAGTTATTGTTGCCGACTGTTCGGCCGAGTATTCGGGCCGCCTCAACGCCTCACTGCCCCTGGCCAAACGTGTATT GCTGATCAAGGCCGATTCCAGCCTGTTGATTTTCTCCGAATTGGGCTCCTACAAGCCGCTGAACTGGATGACCGCGCCCT GCACGATTCGTGAGATCGACCCAGCCGCCAAATCTGCGCAACATTCCCGGGAAAGTGTCGCTGGTGGGGCTGTGGATGGT GATTCCGCGACGCATTCCCCGGAAAGTGTCGCCGCTGGTGAGCCGGAAAAGGTGTTACGTGTCAGCGCCGACAAGGGCTC GGACATTCTTGAAGTGACGCTGCAACACATCTATTCCGACCAAACCTATGATCTGGGCGAAGATCCGGGTCTCATCAAGG ATGGCGTGGAAGACCATCTGCAGCGCTATCTGGCCGAGCAGATCGAGCGTATCGGCAAGGGAGCCAAGCTGGTGCGTCGC GAATACCCGACCGCCATTGGCCCAGTGGATATTATGGCCGTGAATGCCGAAGGCGAGCATGTGGCTGTGGAAATCAAACG TCACGGCGGCATTGATGGCGTCGAGCAGCTGACTCGCTACTGCGAACTGCTCAATCGTGATCCGCTGCTGGCCCCGGTGC ACGGCATCTTCGCCGCACAAACCATCACGCCGCAAGCCCAGGTCTTGGCCAAGGACCGTGGCTTCACCTGCCTCATTCTC GATTACGACGATATGAAAGGCACCGAGGACGACAGTCTCAGGCTGTTCTAG
Upstream 100 bases:
>100_bases CATCGCCGAGTGATCTGAACCAACTCCTTAAGGGACTCTCTGGTTTTCCAGAGAGCCCCTTTTGCTATGTATGCCATGTG TTGCGCTACAGTGGTGGCCT
Downstream 100 bases:
>100_bases ATATAGCAGGGGCTCCCTCATCAGAGGGAGCCCCTGCTATATCTTTATCTTTTAGTACGCGGCGAGAATATCGATTACGA AGACCAACGTGGAGTTGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 256; Mature: 256
Protein sequence:
>256_residues MRVIVADCSAEYSGRLNASLPLAKRVLLIKADSSLLIFSELGSYKPLNWMTAPCTIREIDPAAKSAQHSRESVAGGAVDG DSATHSPESVAAGEPEKVLRVSADKGSDILEVTLQHIYSDQTYDLGEDPGLIKDGVEDHLQRYLAEQIERIGKGAKLVRR EYPTAIGPVDIMAVNAEGEHVAVEIKRHGGIDGVEQLTRYCELLNRDPLLAPVHGIFAAQTITPQAQVLAKDRGFTCLIL DYDDMKGTEDDSLRLF
Sequences:
>Translated_256_residues MRVIVADCSAEYSGRLNASLPLAKRVLLIKADSSLLIFSELGSYKPLNWMTAPCTIREIDPAAKSAQHSRESVAGGAVDG DSATHSPESVAAGEPEKVLRVSADKGSDILEVTLQHIYSDQTYDLGEDPGLIKDGVEDHLQRYLAEQIERIGKGAKLVRR EYPTAIGPVDIMAVNAEGEHVAVEIKRHGGIDGVEQLTRYCELLNRDPLLAPVHGIFAAQTITPQAQVLAKDRGFTCLIL DYDDMKGTEDDSLRLF >Mature_256_residues MRVIVADCSAEYSGRLNASLPLAKRVLLIKADSSLLIFSELGSYKPLNWMTAPCTIREIDPAAKSAQHSRESVAGGAVDG DSATHSPESVAAGEPEKVLRVSADKGSDILEVTLQHIYSDQTYDLGEDPGLIKDGVEDHLQRYLAEQIERIGKGAKLVRR EYPTAIGPVDIMAVNAEGEHVAVEIKRHGGIDGVEQLTRYCELLNRDPLLAPVHGIFAAQTITPQAQVLAKDRGFTCLIL DYDDMKGTEDDSLRLF
Specific function: Unknown
COG id: COG1637
COG function: function code L; Predicted nuclease of the RecB family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0286 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1121_BIFLD (B3DTU8)
Other databases:
- EMBL: CP000605 - RefSeq: YP_001955065.1 - GeneID: 6364630 - GenomeReviews: CP000605_GR - KEGG: blj:BLD_1121 - HOGENOM: HBG322466 - OMA: VDYVGRL - ProtClustDB: PRK03298 - HAMAP: MF_00722 - InterPro: IPR002793
Pfam domain/function: PF01939 DUF91
EC number: NA
Molecular weight: Translated: 27867; Mature: 27867
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVIVADCSAEYSGRLNASLPLAKRVLLIKADSSLLIFSELGSYKPLNWMTAPCTIREID CEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCEEECCEEEEECC PAAKSAQHSRESVAGGAVDGDSATHSPESVAAGEPEKVLRVSADKGSDILEVTLQHIYSD HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHCC QTYDLGEDPGLIKDGVEDHLQRYLAEQIERIGKGAKLVRREYPTAIGPVDIMAVNAEGEH CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCCE VAVEIKRHGGIDGVEQLTRYCELLNRDPLLAPVHGIFAAQTITPQAQVLAKDRGFTCLIL EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCHHHHHCCCCCCEEEEE DYDDMKGTEDDSLRLF ECCCCCCCCCCCEEEC >Mature Secondary Structure MRVIVADCSAEYSGRLNASLPLAKRVLLIKADSSLLIFSELGSYKPLNWMTAPCTIREID CEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCEEECCEEEEECC PAAKSAQHSRESVAGGAVDGDSATHSPESVAAGEPEKVLRVSADKGSDILEVTLQHIYSD HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHCC QTYDLGEDPGLIKDGVEDHLQRYLAEQIERIGKGAKLVRREYPTAIGPVDIMAVNAEGEH CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCCE VAVEIKRHGGIDGVEQLTRYCELLNRDPLLAPVHGIFAAQTITPQAQVLAKDRGFTCLIL EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCHHHHHCCCCCCEEEEE DYDDMKGTEDDSLRLF ECCCCCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA