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The map label for this gene is xerD [C]

Identifier: 213691190

GI number: 213691190

Start: 321760

End: 323223

Strand: Direct

Name: xerD [C]

Synonym: Blon_0271

Alternate gene names: 213691190

Gene position: 321760-323223 (Clockwise)

Preceding gene: 213691185

Following gene: 213691191

Centisome position: 11.36

GC content: 64.48

Gene sequence:

>1464_bases
ATGCCCGGCGTGGTGTTCTGCCGCGTCTGGACGCAGGCTGGGCTTGCGTGGCCGAAAGCCGGCAAACGGCCCAGACCCTA
TGATTTCCGGCATCGGCTCGCGTTCGCGAACATCGAGCGATGGGCTCGCGACGGCATGGACGTGATGGCGATGCTGCCCT
ACCTGGCGGCCTACATGGGACACGCCGGCATCGGCAGCACCCCCTACTACGTGCACGCCGGCCCCGATTTCATGGACGGG
TACGCGGATATCGTCGCCGACGCCGAACGAGTGGTCCCCGGAAACGGGGGGACCATGAACACGGCAAGACCGATGAACAC
CAGGCCGGACGAACCGGATTTCTGGCGTGTCGCGCGCGGCTGGCTGCACCACCGGCTTTCCCGCGTGCGCGGCAACTCGC
CGAAGACCGTCGAGGCATGCCGCATCGGCCTGGAATCCTACATCCGATGGCTCGAGACCATGGAAGGCGTGGAACGCGAC
GACATCGGGTTCGGGCATTTCGACCGGGCGCACCTGGGCCGGTGGGTCGAATGGATGCGGGCCGGACGCGGATACTCGGA
CCGCACCATCATGCTGAGGATGACGACGATGCGCGCATTCCTCGGCCACGCGAGCCTCGAGCATCCGACGTTGACCGCAT
TGGCCAACGACGCGGCCGGCATACGTGTCAGACCACCCGCGCGAAAACCCGTCGACCACCTCGGGGAGGAGCACACCAAA
GCGTTGCTGACCGCATGGGGCACCGGCGACGCCAAATCGCGCAGGAACCGCATGCTCCCGATCCTCATGTACGACACCGC
CGCCAGGATCGGCGAACTCGCCGCCCTGACACTCGAGGACGTGAGGATGGACGAGCCGGCCAGGATCACGATCACAGGCA
AACGCGGCAAGACACGGATCGTGCCCATGGGAGAAAGGACGCGACGTCACCTGACGTCCTACCTCGACGAATTCCATCCC
GACACGGACGGGAGCGACGGAGCCAGACCGTTGTTCCACTCGACGAGGAACGGCACCATCCGCCCGCTCTCCGTGGACCG
GATCGACGAGATCCTCAAAACCGCGGCGTCAAAGGCACGCGGGACGTGCCCCTCCATGCCCGGACGTATCCACTGCCGCC
TGATACGACGGACCCGTGCCATGGACCTCTACCAACAGGGCGTGCCACTGCCGACCGTCATGCAACTGCTCGGCCACGAA
AGCATGAGCACCACCAGCGCGTTCTACGCGTTCGCGACCCTCGACATGATGCGCAAGGCCGTCGACGCGGCCGACCCCGG
CCCCGACCCGCCAAGGAGACATGGCTCAGCGAACAACGGCTCCGACAGCTCCGCACCCTCAAATAGCCAGAAAACGTTAA
ACCGGGAAACAACACGGAATGCGGCACTCCCACCACAATCCCGAACCGTTTCCCGGCTTAACAACAAACCCGGCTTAATC
ACTGTTAAACCGATATCGGTTTAA

Upstream 100 bases:

>100_bases
TTTCCATCAGATGATCCCATACACAAACAATTAGACACCCTCTCAGAATGACCGGCCGGCGTTTTTCGTCGCCTCCACCG
GCAGCCCGGTCTGCCCGAGC

Downstream 100 bases:

>100_bases
CAGCGACATGGGATGGCAGTACCAGCACCCATGGTGGCGCGAGGAACTCGAACGACTGAACATCCGCCAGTCGATGAGCC
GCAAGGGCAACTGCCTGGAC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 486

Protein sequence:

>487_residues
MPGVVFCRVWTQAGLAWPKAGKRPRPYDFRHRLAFANIERWARDGMDVMAMLPYLAAYMGHAGIGSTPYYVHAGPDFMDG
YADIVADAERVVPGNGGTMNTARPMNTRPDEPDFWRVARGWLHHRLSRVRGNSPKTVEACRIGLESYIRWLETMEGVERD
DIGFGHFDRAHLGRWVEWMRAGRGYSDRTIMLRMTTMRAFLGHASLEHPTLTALANDAAGIRVRPPARKPVDHLGEEHTK
ALLTAWGTGDAKSRRNRMLPILMYDTAARIGELAALTLEDVRMDEPARITITGKRGKTRIVPMGERTRRHLTSYLDEFHP
DTDGSDGARPLFHSTRNGTIRPLSVDRIDEILKTAASKARGTCPSMPGRIHCRLIRRTRAMDLYQQGVPLPTVMQLLGHE
SMSTTSAFYAFATLDMMRKAVDAADPGPDPPRRHGSANNGSDSSAPSNSQKTLNRETTRNAALPPQSRTVSRLNNKPGLI
TVKPISV

Sequences:

>Translated_487_residues
MPGVVFCRVWTQAGLAWPKAGKRPRPYDFRHRLAFANIERWARDGMDVMAMLPYLAAYMGHAGIGSTPYYVHAGPDFMDG
YADIVADAERVVPGNGGTMNTARPMNTRPDEPDFWRVARGWLHHRLSRVRGNSPKTVEACRIGLESYIRWLETMEGVERD
DIGFGHFDRAHLGRWVEWMRAGRGYSDRTIMLRMTTMRAFLGHASLEHPTLTALANDAAGIRVRPPARKPVDHLGEEHTK
ALLTAWGTGDAKSRRNRMLPILMYDTAARIGELAALTLEDVRMDEPARITITGKRGKTRIVPMGERTRRHLTSYLDEFHP
DTDGSDGARPLFHSTRNGTIRPLSVDRIDEILKTAASKARGTCPSMPGRIHCRLIRRTRAMDLYQQGVPLPTVMQLLGHE
SMSTTSAFYAFATLDMMRKAVDAADPGPDPPRRHGSANNGSDSSAPSNSQKTLNRETTRNAALPPQSRTVSRLNNKPGLI
TVKPISV
>Mature_486_residues
PGVVFCRVWTQAGLAWPKAGKRPRPYDFRHRLAFANIERWARDGMDVMAMLPYLAAYMGHAGIGSTPYYVHAGPDFMDGY
ADIVADAERVVPGNGGTMNTARPMNTRPDEPDFWRVARGWLHHRLSRVRGNSPKTVEACRIGLESYIRWLETMEGVERDD
IGFGHFDRAHLGRWVEWMRAGRGYSDRTIMLRMTTMRAFLGHASLEHPTLTALANDAAGIRVRPPARKPVDHLGEEHTKA
LLTAWGTGDAKSRRNRMLPILMYDTAARIGELAALTLEDVRMDEPARITITGKRGKTRIVPMGERTRRHLTSYLDEFHPD
TDGSDGARPLFHSTRNGTIRPLSVDRIDEILKTAASKARGTCPSMPGRIHCRLIRRTRAMDLYQQGVPLPTVMQLLGHES
MSTTSAFYAFATLDMMRKAVDAADPGPDPPRRHGSANNGSDSSAPSNSQKTLNRETTRNAALPPQSRTVSRLNNKPGLIT
VKPISV

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 54320; Mature: 54189

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGVVFCRVWTQAGLAWPKAGKRPRPYDFRHRLAFANIERWARDGMDVMAMLPYLAAYMG
CCCEEEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
HAGIGSTPYYVHAGPDFMDGYADIVADAERVVPGNGGTMNTARPMNTRPDEPDFWRVARG
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
WLHHRLSRVRGNSPKTVEACRIGLESYIRWLETMEGVERDDIGFGHFDRAHLGRWVEWMR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
AGRGYSDRTIMLRMTTMRAFLGHASLEHPTLTALANDAAGIRVRPPARKPVDHLGEEHTK
HCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCHHHHHHHHHH
ALLTAWGTGDAKSRRNRMLPILMYDTAARIGELAALTLEDVRMDEPARITITGKRGKTRI
HHHHCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEE
VPMGERTRRHLTSYLDEFHPDTDGSDGARPLFHSTRNGTIRPLSVDRIDEILKTAASKAR
EECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCEECCCHHHHHHHHHHHHHHHC
GTCPSMPGRIHCRLIRRTRAMDLYQQGVPLPTVMQLLGHESMSTTSAFYAFATLDMMRKA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VDAADPGPDPPRRHGSANNGSDSSAPSNSQKTLNRETTRNAALPPQSRTVSRLNNKPGLI
HHCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEE
TVKPISV
EEEECCC
>Mature Secondary Structure 
PGVVFCRVWTQAGLAWPKAGKRPRPYDFRHRLAFANIERWARDGMDVMAMLPYLAAYMG
CCEEEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
HAGIGSTPYYVHAGPDFMDGYADIVADAERVVPGNGGTMNTARPMNTRPDEPDFWRVARG
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
WLHHRLSRVRGNSPKTVEACRIGLESYIRWLETMEGVERDDIGFGHFDRAHLGRWVEWMR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
AGRGYSDRTIMLRMTTMRAFLGHASLEHPTLTALANDAAGIRVRPPARKPVDHLGEEHTK
HCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCHHHHHHHHHH
ALLTAWGTGDAKSRRNRMLPILMYDTAARIGELAALTLEDVRMDEPARITITGKRGKTRI
HHHHCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEE
VPMGERTRRHLTSYLDEFHPDTDGSDGARPLFHSTRNGTIRPLSVDRIDEILKTAASKAR
EECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCEECCCHHHHHHHHHHHHHHHC
GTCPSMPGRIHCRLIRRTRAMDLYQQGVPLPTVMQLLGHESMSTTSAFYAFATLDMMRKA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VDAADPGPDPPRRHGSANNGSDSSAPSNSQKTLNRETTRNAALPPQSRTVSRLNNKPGLI
HHCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEE
TVKPISV
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]