| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is ydbJ [H]
Identifier: 213691161
GI number: 213691161
Start: 284229
End: 284933
Strand: Reverse
Name: ydbJ [H]
Synonym: Blon_0240
Alternate gene names: 213691161
Gene position: 284933-284229 (Counterclockwise)
Preceding gene: 213691162
Following gene: 213691160
Centisome position: 10.06
GC content: 57.3
Gene sequence:
>705_bases ATGAAATCACTGTCGGCAACTCTCTACTGCAACAGGGTGTCGAAAACTATCGGCGGGAAACCGGTCCTGAACGACATATC ATTCAGCGCGTATCCCGGAGAAACCATCGCCCTGATCGGCCCGAACGGGGCCGGTAAGACCACGCTGCTCAAAACCTTGG GTGGCCTGATCGCCCCCGACCAAGGTGAAACTAATATCCGCGGCCGTATCATGAACCCCGAGAACCGCGACATGCTATTG AGACAGGTCGGCATGCTGATCGGCATTCCCGTCTTCGAGCGAGGCATGAGCGTACGGGCCATCCTCCACAAGCATCTAGC GTTCATGCGATGCGACTGGTCCCCCGACGAAACAATGGAACGGGTCGGCTTGGCCTCCATGGGGGATTTACCGGCCGATA CCTTGTCCATGGGCAACCGCATGCGCCTTGCACTGGCAACGGCCCTGGCGCATCATCCCACGCTCCTGCTCCTGGATGAG CCGATGAACGGGTTAGACCCCACGGGTATGAAGCTGTTTTGCCGCATCATCCGGGAAGAGAACAAACGAGGAGTCACGGC CATCATCAGTGCGCACATGCTCGCCCAACTCGAAACCATCGGAGACCAGGTCATCGTCATCAATCACGGTTCCGTCAAAG CGCAACATGCCATGAGCGACATCAGCGATCTGGAATCCTACTATTTCCGCCACACTCAGGACTAA
Upstream 100 bases:
>100_bases GGTAGCAACATAAGCCATTCGATTGATTTATTCGTAGTCTTCGCATGGTGTCTTACCGGCGTGGCCGGTTGCCTTGCGGG ATTATCCAAAAGGAGATGAA
Downstream 100 bases:
>100_bases CACAAACAACCAAGGAGCATGTCCCATGCTGGATGTCTACCGCATCGAACGACAATACACCTCGTATAGGTTCTACCTGT TTCTACTGGCCGCCACTCTT
Product: ABC transporter
Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MKSLSATLYCNRVSKTIGGKPVLNDISFSAYPGETIALIGPNGAGKTTLLKTLGGLIAPDQGETNIRGRIMNPENRDMLL RQVGMLIGIPVFERGMSVRAILHKHLAFMRCDWSPDETMERVGLASMGDLPADTLSMGNRMRLALATALAHHPTLLLLDE PMNGLDPTGMKLFCRIIREENKRGVTAIISAHMLAQLETIGDQVIVINHGSVKAQHAMSDISDLESYYFRHTQD
Sequences:
>Translated_234_residues MKSLSATLYCNRVSKTIGGKPVLNDISFSAYPGETIALIGPNGAGKTTLLKTLGGLIAPDQGETNIRGRIMNPENRDMLL RQVGMLIGIPVFERGMSVRAILHKHLAFMRCDWSPDETMERVGLASMGDLPADTLSMGNRMRLALATALAHHPTLLLLDE PMNGLDPTGMKLFCRIIREENKRGVTAIISAHMLAQLETIGDQVIVINHGSVKAQHAMSDISDLESYYFRHTQD >Mature_234_residues MKSLSATLYCNRVSKTIGGKPVLNDISFSAYPGETIALIGPNGAGKTTLLKTLGGLIAPDQGETNIRGRIMNPENRDMLL RQVGMLIGIPVFERGMSVRAILHKHLAFMRCDWSPDETMERVGLASMGDLPADTLSMGNRMRLALATALAHHPTLLLLDE PMNGLDPTGMKLFCRIIREENKRGVTAIISAHMLAQLETIGDQVIVINHGSVKAQHAMSDISDLESYYFRHTQD
Specific function: Part Of The Abc Transporter Complex Cysawtp Involved In Sulfate/Thiosulfate Import. Responsible For Energy Coupling To The Transport System. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27881501, Length=225, Percent_Identity=28.4444444444444, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI30795238, Length=227, Percent_Identity=29.0748898678414, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI45446740, Length=224, Percent_Identity=26.3392857142857, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI31657092, Length=207, Percent_Identity=29.4685990338164, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI47078218, Length=225, Percent_Identity=27.1111111111111, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI105990541, Length=215, Percent_Identity=26.9767441860465, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI27262624, Length=198, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI27262626, Length=198, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI9961252, Length=246, Percent_Identity=27.6422764227642, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI9961250, Length=246, Percent_Identity=27.6422764227642, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI4505771, Length=246, Percent_Identity=27.6422764227642, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI150417984, Length=202, Percent_Identity=24.7524752475248, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI153792144, Length=206, Percent_Identity=28.1553398058252, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI46592971, Length=207, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI46592915, Length=207, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI46592956, Length=207, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI46592898, Length=207, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI46592978, Length=207, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI46592964, Length=207, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI27477115, Length=212, Percent_Identity=25.9433962264151, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI157502203, Length=213, Percent_Identity=28.169014084507, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI116734710, Length=200, Percent_Identity=24, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI157502201, Length=215, Percent_Identity=27.906976744186, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI73747915, Length=223, Percent_Identity=28.2511210762332, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI27436953, Length=199, Percent_Identity=27.6381909547739, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI21536376, Length=202, Percent_Identity=27.7227722772277, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI42490749, Length=210, Percent_Identity=27.1428571428571, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI255708477, Length=249, Percent_Identity=26.5060240963855, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI21536378, Length=226, Percent_Identity=27.8761061946903, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9665248, Length=231, Percent_Identity=24.6753246753247, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1788761, Length=220, Percent_Identity=30.9090909090909, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=27.3913043478261, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1789593, Length=231, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1788897, Length=225, Percent_Identity=30.6666666666667, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786872, Length=208, Percent_Identity=29.8076923076923, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI87081782, Length=221, Percent_Identity=27.6018099547511, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1789586, Length=244, Percent_Identity=31.5573770491803, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787029, Length=208, Percent_Identity=28.8461538461538, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87081791, Length=220, Percent_Identity=29.5454545454545, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787089, Length=247, Percent_Identity=28.7449392712551, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1786398, Length=213, Percent_Identity=28.6384976525822, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI87081709, Length=207, Percent_Identity=30.4347826086957, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788225, Length=234, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1788165, Length=209, Percent_Identity=31.1004784688995, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1789864, Length=226, Percent_Identity=27.4336283185841, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI48995001, Length=224, Percent_Identity=26.7857142857143, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1790190, Length=233, Percent_Identity=24.4635193133047, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1790525, Length=229, Percent_Identity=27.0742358078603, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789672, Length=235, Percent_Identity=26.8085106382979, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI48994997, Length=213, Percent_Identity=30.0469483568075, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786803, Length=236, Percent_Identity=27.9661016949153, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786319, Length=239, Percent_Identity=26.7782426778243, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790544, Length=232, Percent_Identity=24.1379310344828, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1790739, Length=222, Percent_Identity=28.8288288288288, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1789891, Length=206, Percent_Identity=30.0970873786408, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787712, Length=230, Percent_Identity=26.0869565217391, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789873, Length=199, Percent_Identity=31.1557788944724, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788450, Length=210, Percent_Identity=29.0476190476191, Blast_Score=76, Evalue=1e-15, Organism=Escherichia coli, GI1790467, Length=216, Percent_Identity=28.7037037037037, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787547, Length=213, Percent_Identity=28.6384976525822, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786345, Length=229, Percent_Identity=27.5109170305677, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789032, Length=200, Percent_Identity=27.5, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787370, Length=226, Percent_Identity=26.5486725663717, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1786563, Length=154, Percent_Identity=34.4155844155844, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789751, Length=176, Percent_Identity=30.6818181818182, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1789991, Length=219, Percent_Identity=25.1141552511416, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI87082064, Length=188, Percent_Identity=31.3829787234043, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787112, Length=231, Percent_Identity=29.004329004329, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786253, Length=203, Percent_Identity=27.0935960591133, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI87082268, Length=228, Percent_Identity=30.2631578947368, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787792, Length=225, Percent_Identity=28.4444444444444, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786703, Length=210, Percent_Identity=32.3809523809524, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1787105, Length=204, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1788506, Length=212, Percent_Identity=28.3018867924528, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787500, Length=202, Percent_Identity=25.7425742574257, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786698, Length=196, Percent_Identity=29.5918367346939, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI1787758, Length=212, Percent_Identity=26.4150943396226, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1788472, Length=213, Percent_Identity=24.4131455399061, Blast_Score=61, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17565586, Length=205, Percent_Identity=28.780487804878, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI115533608, Length=197, Percent_Identity=28.9340101522843, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17533971, Length=206, Percent_Identity=29.126213592233, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17567265, Length=224, Percent_Identity=28.125, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17558664, Length=226, Percent_Identity=27.4336283185841, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI212646699, Length=206, Percent_Identity=26.6990291262136, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115535101, Length=223, Percent_Identity=28.6995515695067, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193202349, Length=205, Percent_Identity=26.8292682926829, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71996809, Length=205, Percent_Identity=27.8048780487805, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211015, Length=205, Percent_Identity=27.8048780487805, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211017, Length=205, Percent_Identity=27.8048780487805, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71983523, Length=213, Percent_Identity=27.2300469483568, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71983516, Length=213, Percent_Identity=27.2300469483568, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71983510, Length=213, Percent_Identity=27.2300469483568, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI25146777, Length=228, Percent_Identity=25, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992285, Length=208, Percent_Identity=25.4807692307692, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17510237, Length=237, Percent_Identity=24.0506329113924, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17565938, Length=206, Percent_Identity=28.1553398058252, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17539902, Length=206, Percent_Identity=29.6116504854369, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=212, Percent_Identity=26.4150943396226, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24666092, Length=219, Percent_Identity=30.1369863013699, Blast_Score=101, Evalue=4e-22, Organism=Drosophila melanogaster, GI24648314, Length=209, Percent_Identity=31.5789473684211, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI28574150, Length=234, Percent_Identity=22.6495726495727, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI116007328, Length=234, Percent_Identity=22.6495726495727, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24643674, Length=218, Percent_Identity=25.2293577981651, Blast_Score=78, Evalue=4e-15, Organism=Drosophila melanogaster, GI17136592, Length=237, Percent_Identity=26.5822784810127, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI281363262, Length=220, Percent_Identity=25.9090909090909, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24653245, Length=220, Percent_Identity=25.9090909090909, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI85726357, Length=222, Percent_Identity=27.027027027027, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI221512771, Length=212, Percent_Identity=25.9433962264151, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI28574533, Length=226, Percent_Identity=28.7610619469027, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24659289, Length=235, Percent_Identity=25.1063829787234, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24648279, Length=199, Percent_Identity=26.6331658291457, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI161078426, Length=199, Percent_Identity=26.6331658291457, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI28574259, Length=201, Percent_Identity=27.8606965174129, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: 3.6.3.25 [C]
Molecular weight: Translated: 25637; Mature: 25637
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 6.0 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 6.0 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLSATLYCNRVSKTIGGKPVLNDISFSAYPGETIALIGPNGAGKTTLLKTLGGLIAPD CCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCC QGETNIRGRIMNPENRDMLLRQVGMLIGIPVFERGMSVRAILHKHLAFMRCDWSPDETME CCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHEECCCCCHHHHH RVGLASMGDLPADTLSMGNRMRLALATALAHHPTLLLLDEPMNGLDPTGMKLFCRIIREE HHCCHHCCCCCHHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHC NKRGVTAIISAHMLAQLETIGDQVIVINHGSVKAQHAMSDISDLESYYFRHTQD CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKSLSATLYCNRVSKTIGGKPVLNDISFSAYPGETIALIGPNGAGKTTLLKTLGGLIAPD CCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCC QGETNIRGRIMNPENRDMLLRQVGMLIGIPVFERGMSVRAILHKHLAFMRCDWSPDETME CCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHEECCCCCHHHHH RVGLASMGDLPADTLSMGNRMRLALATALAHHPTLLLLDEPMNGLDPTGMKLFCRIIREE HHCCHHCCCCCHHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHC NKRGVTAIISAHMLAQLETIGDQVIVINHGSVKAQHAMSDISDLESYYFRHTQD CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]
Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]