Definition Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession NC_011593
Length 2,832,748

Click here to switch to the map view.

The map label for this gene is 213691083

Identifier: 213691083

GI number: 213691083

Start: 190916

End: 192049

Strand: Reverse

Name: 213691083

Synonym: Blon_0162

Alternate gene names: NA

Gene position: 192049-190916 (Counterclockwise)

Preceding gene: 213691087

Following gene: 213691080

Centisome position: 6.78

GC content: 58.82

Gene sequence:

>1134_bases
ATGGCATTGCTGCATCGACGTTCGACAAGTAAGCGTGCCTCACAGGAAATGCGGGAAAACAACGCGGCCATGCCGGATGC
CACATCTGCAAATGACAACGTTTCCTCAGCGTGTCCCGAGCCCGCAGCATTCGCTCCAACACCATTTGACGAAGTCATCG
ATATCAGCGATCTCGTGGCCGAGCGCCGACGCCTGCAACGCAACCTGTGGGCGATGCGCATCATCACCATTGTGTTGCTG
ATCGCCGCAATCGCCGTGGCCTGCTTCCCGCTAGCGTTGCAATTCGAGTCCGACCGCAACTTGGCCGCCACCACAGCCAC
CACAGCCAAAGAAGTAGCCGGCTGGCCTTATCCGCAGGCGGAAGACAAGCTCACGGAGGCCCGCACATACAACAAGAAAC
TCGCTGAATCCGGCCAGCCCATCTTGGGTGAAGCCGTCGATCCGTTCTCCGCCGCCCAAGGAGGATCCCAAGCCAGCGGC
GAGGATTCCGTCTCAAAGAAAGACAAGGAATACCAGTCACTGCTTAGTACCGGAAACGGCGTGATGGGCACAATCAGGGT
GCCCAAACAGTCCATCAATCTGCCGATTTATCACGGCACTTCCGAGGAAGCACTGGCTTCTGGCGCCGGCCACTTGTACG
GCACGTCGCTGCCGGTGGGAGGTAAGTCCACCCATTCGGTCATTACCGGGCACCGCGGGTTGGTTGAAGCGCTGATGTTC
ACCCGTTTGGACGAGGTGAAAGAGGGCGACTTCTTCTACATCGAAGTCATGGGCGAAACTTTGGGCTACAAAGTGGACCG
CATTTCAGTGATTTTGCCGGATGACACGTCGAAGCTCAAGATTGCGCCGGGTGAGGACCGTGTCACCTTGATGACCTGTA
CGCCATACGGCGTGAACACGCACCGACTGCTTATCTCCGGGCACCGAGTGGCGATTCCGATGCCGGCCCCCGAGCCGAAT
GACGTGCTTGACGCGCGCAATATCGCCCTTGGTGTTGGTCTAGGCATACTGGCGGCAGGACTGTTCATCATCTGGTTGGC
AGACGACACAAGGGCCGCGTGCATCATCCGCCATGGCGCATTCTGGCCGTGGATGCGCCGCAAGGGCGAGAGCGCCAATG
ATACGCTGGCCTAG

Upstream 100 bases:

>100_bases
GTTGCCATTTGCGGCAGCACCTATGCCAACCACGACTAAGACGGGCCGGCCGTCTTGTATAAGCAAATCATGAGCAGATC
AAGCGAAGGAACAGGCGACT

Downstream 100 bases:

>100_bases
GCCTCGCGCCGACCGGCCAGTGCCCTGCCTAGCGTGATTTCGTCGGCGTACTCCAAGTCGGAGCCCACCGGCAGGCCGCT
GGCAAGTCGGGTGACCTTGA

Product: sortase family protein

Products: NA

Alternate protein names: Sortase; Fimbrial Associated Sortase-Like Protein; Peptidase C; Sortase-Like Protein; Sortase SrtB; Sortase SrtC; Fimbrial Associated Sortase; Sortase Family Protein LPXTG-Site Transpeptidase; Sortase C Family; C-Type Sortase; Fimbria-Associated Protein; Sortase C Type; Lpxtg-Site Transpeptidase Family Protein; Sortase C; SortaseC; Fimbrial Associated Sortase Family Protein; Sortase SrtA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MALLHRRSTSKRASQEMRENNAAMPDATSANDNVSSACPEPAAFAPTPFDEVIDISDLVAERRRLQRNLWAMRIITIVLL
IAAIAVACFPLALQFESDRNLAATTATTAKEVAGWPYPQAEDKLTEARTYNKKLAESGQPILGEAVDPFSAAQGGSQASG
EDSVSKKDKEYQSLLSTGNGVMGTIRVPKQSINLPIYHGTSEEALASGAGHLYGTSLPVGGKSTHSVITGHRGLVEALMF
TRLDEVKEGDFFYIEVMGETLGYKVDRISVILPDDTSKLKIAPGEDRVTLMTCTPYGVNTHRLLISGHRVAIPMPAPEPN
DVLDARNIALGVGLGILAAGLFIIWLADDTRAACIIRHGAFWPWMRRKGESANDTLA

Sequences:

>Translated_377_residues
MALLHRRSTSKRASQEMRENNAAMPDATSANDNVSSACPEPAAFAPTPFDEVIDISDLVAERRRLQRNLWAMRIITIVLL
IAAIAVACFPLALQFESDRNLAATTATTAKEVAGWPYPQAEDKLTEARTYNKKLAESGQPILGEAVDPFSAAQGGSQASG
EDSVSKKDKEYQSLLSTGNGVMGTIRVPKQSINLPIYHGTSEEALASGAGHLYGTSLPVGGKSTHSVITGHRGLVEALMF
TRLDEVKEGDFFYIEVMGETLGYKVDRISVILPDDTSKLKIAPGEDRVTLMTCTPYGVNTHRLLISGHRVAIPMPAPEPN
DVLDARNIALGVGLGILAAGLFIIWLADDTRAACIIRHGAFWPWMRRKGESANDTLA
>Mature_376_residues
ALLHRRSTSKRASQEMRENNAAMPDATSANDNVSSACPEPAAFAPTPFDEVIDISDLVAERRRLQRNLWAMRIITIVLLI
AAIAVACFPLALQFESDRNLAATTATTAKEVAGWPYPQAEDKLTEARTYNKKLAESGQPILGEAVDPFSAAQGGSQASGE
DSVSKKDKEYQSLLSTGNGVMGTIRVPKQSINLPIYHGTSEEALASGAGHLYGTSLPVGGKSTHSVITGHRGLVEALMFT
RLDEVKEGDFFYIEVMGETLGYKVDRISVILPDDTSKLKIAPGEDRVTLMTCTPYGVNTHRLLISGHRVAIPMPAPEPND
VLDARNIALGVGLGILAAGLFIIWLADDTRAACIIRHGAFWPWMRRKGESANDTLA

Specific function: Unknown

COG id: COG3764

COG function: function code M; Sortase (surface protein transpeptidase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40699; Mature: 40568

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLHRRSTSKRASQEMRENNAAMPDATSANDNVSSACPEPAAFAPTPFDEVIDISDLVA
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHH
ERRRLQRNLWAMRIITIVLLIAAIAVACFPLALQFESDRNLAATTATTAKEVAGWPYPQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEHHHHHHHHCCCCCCCC
EDKLTEARTYNKKLAESGQPILGEAVDPFSAAQGGSQASGEDSVSKKDKEYQSLLSTGNG
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
VMGTIRVPKQSINLPIYHGTSEEALASGAGHLYGTSLPVGGKSTHSVITGHRGLVEALMF
EEEEEECCHHHCCEEEEECCCHHHHHCCCCCEEECCCCCCCCCCCHHHHCCHHHHHHHHH
TRLDEVKEGDFFYIEVMGETLGYKVDRISVILPDDTSKLKIAPGEDRVTLMTCTPYGVNT
HHHHHHCCCCEEEEEEECHHHCEEEEEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCC
HRLLISGHRVAIPMPAPEPNDVLDARNIALGVGLGILAAGLFIIWLADDTRAACIIRHGA
EEEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECCC
FWPWMRRKGESANDTLA
CCHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ALLHRRSTSKRASQEMRENNAAMPDATSANDNVSSACPEPAAFAPTPFDEVIDISDLVA
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHH
ERRRLQRNLWAMRIITIVLLIAAIAVACFPLALQFESDRNLAATTATTAKEVAGWPYPQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEHHHHHHHHCCCCCCCC
EDKLTEARTYNKKLAESGQPILGEAVDPFSAAQGGSQASGEDSVSKKDKEYQSLLSTGNG
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
VMGTIRVPKQSINLPIYHGTSEEALASGAGHLYGTSLPVGGKSTHSVITGHRGLVEALMF
EEEEEECCHHHCCEEEEECCCHHHHHCCCCCEEECCCCCCCCCCCHHHHCCHHHHHHHHH
TRLDEVKEGDFFYIEVMGETLGYKVDRISVILPDDTSKLKIAPGEDRVTLMTCTPYGVNT
HHHHHHCCCCEEEEEEECHHHCEEEEEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCC
HRLLISGHRVAIPMPAPEPNDVLDARNIALGVGLGILAAGLFIIWLADDTRAACIIRHGA
EEEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECCC
FWPWMRRKGESANDTLA
CCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA