| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213691083
Identifier: 213691083
GI number: 213691083
Start: 190916
End: 192049
Strand: Reverse
Name: 213691083
Synonym: Blon_0162
Alternate gene names: NA
Gene position: 192049-190916 (Counterclockwise)
Preceding gene: 213691087
Following gene: 213691080
Centisome position: 6.78
GC content: 58.82
Gene sequence:
>1134_bases ATGGCATTGCTGCATCGACGTTCGACAAGTAAGCGTGCCTCACAGGAAATGCGGGAAAACAACGCGGCCATGCCGGATGC CACATCTGCAAATGACAACGTTTCCTCAGCGTGTCCCGAGCCCGCAGCATTCGCTCCAACACCATTTGACGAAGTCATCG ATATCAGCGATCTCGTGGCCGAGCGCCGACGCCTGCAACGCAACCTGTGGGCGATGCGCATCATCACCATTGTGTTGCTG ATCGCCGCAATCGCCGTGGCCTGCTTCCCGCTAGCGTTGCAATTCGAGTCCGACCGCAACTTGGCCGCCACCACAGCCAC CACAGCCAAAGAAGTAGCCGGCTGGCCTTATCCGCAGGCGGAAGACAAGCTCACGGAGGCCCGCACATACAACAAGAAAC TCGCTGAATCCGGCCAGCCCATCTTGGGTGAAGCCGTCGATCCGTTCTCCGCCGCCCAAGGAGGATCCCAAGCCAGCGGC GAGGATTCCGTCTCAAAGAAAGACAAGGAATACCAGTCACTGCTTAGTACCGGAAACGGCGTGATGGGCACAATCAGGGT GCCCAAACAGTCCATCAATCTGCCGATTTATCACGGCACTTCCGAGGAAGCACTGGCTTCTGGCGCCGGCCACTTGTACG GCACGTCGCTGCCGGTGGGAGGTAAGTCCACCCATTCGGTCATTACCGGGCACCGCGGGTTGGTTGAAGCGCTGATGTTC ACCCGTTTGGACGAGGTGAAAGAGGGCGACTTCTTCTACATCGAAGTCATGGGCGAAACTTTGGGCTACAAAGTGGACCG CATTTCAGTGATTTTGCCGGATGACACGTCGAAGCTCAAGATTGCGCCGGGTGAGGACCGTGTCACCTTGATGACCTGTA CGCCATACGGCGTGAACACGCACCGACTGCTTATCTCCGGGCACCGAGTGGCGATTCCGATGCCGGCCCCCGAGCCGAAT GACGTGCTTGACGCGCGCAATATCGCCCTTGGTGTTGGTCTAGGCATACTGGCGGCAGGACTGTTCATCATCTGGTTGGC AGACGACACAAGGGCCGCGTGCATCATCCGCCATGGCGCATTCTGGCCGTGGATGCGCCGCAAGGGCGAGAGCGCCAATG ATACGCTGGCCTAG
Upstream 100 bases:
>100_bases GTTGCCATTTGCGGCAGCACCTATGCCAACCACGACTAAGACGGGCCGGCCGTCTTGTATAAGCAAATCATGAGCAGATC AAGCGAAGGAACAGGCGACT
Downstream 100 bases:
>100_bases GCCTCGCGCCGACCGGCCAGTGCCCTGCCTAGCGTGATTTCGTCGGCGTACTCCAAGTCGGAGCCCACCGGCAGGCCGCT GGCAAGTCGGGTGACCTTGA
Product: sortase family protein
Products: NA
Alternate protein names: Sortase; Fimbrial Associated Sortase-Like Protein; Peptidase C; Sortase-Like Protein; Sortase SrtB; Sortase SrtC; Fimbrial Associated Sortase; Sortase Family Protein LPXTG-Site Transpeptidase; Sortase C Family; C-Type Sortase; Fimbria-Associated Protein; Sortase C Type; Lpxtg-Site Transpeptidase Family Protein; Sortase C; SortaseC; Fimbrial Associated Sortase Family Protein; Sortase SrtA
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MALLHRRSTSKRASQEMRENNAAMPDATSANDNVSSACPEPAAFAPTPFDEVIDISDLVAERRRLQRNLWAMRIITIVLL IAAIAVACFPLALQFESDRNLAATTATTAKEVAGWPYPQAEDKLTEARTYNKKLAESGQPILGEAVDPFSAAQGGSQASG EDSVSKKDKEYQSLLSTGNGVMGTIRVPKQSINLPIYHGTSEEALASGAGHLYGTSLPVGGKSTHSVITGHRGLVEALMF TRLDEVKEGDFFYIEVMGETLGYKVDRISVILPDDTSKLKIAPGEDRVTLMTCTPYGVNTHRLLISGHRVAIPMPAPEPN DVLDARNIALGVGLGILAAGLFIIWLADDTRAACIIRHGAFWPWMRRKGESANDTLA
Sequences:
>Translated_377_residues MALLHRRSTSKRASQEMRENNAAMPDATSANDNVSSACPEPAAFAPTPFDEVIDISDLVAERRRLQRNLWAMRIITIVLL IAAIAVACFPLALQFESDRNLAATTATTAKEVAGWPYPQAEDKLTEARTYNKKLAESGQPILGEAVDPFSAAQGGSQASG EDSVSKKDKEYQSLLSTGNGVMGTIRVPKQSINLPIYHGTSEEALASGAGHLYGTSLPVGGKSTHSVITGHRGLVEALMF TRLDEVKEGDFFYIEVMGETLGYKVDRISVILPDDTSKLKIAPGEDRVTLMTCTPYGVNTHRLLISGHRVAIPMPAPEPN DVLDARNIALGVGLGILAAGLFIIWLADDTRAACIIRHGAFWPWMRRKGESANDTLA >Mature_376_residues ALLHRRSTSKRASQEMRENNAAMPDATSANDNVSSACPEPAAFAPTPFDEVIDISDLVAERRRLQRNLWAMRIITIVLLI AAIAVACFPLALQFESDRNLAATTATTAKEVAGWPYPQAEDKLTEARTYNKKLAESGQPILGEAVDPFSAAQGGSQASGE DSVSKKDKEYQSLLSTGNGVMGTIRVPKQSINLPIYHGTSEEALASGAGHLYGTSLPVGGKSTHSVITGHRGLVEALMFT RLDEVKEGDFFYIEVMGETLGYKVDRISVILPDDTSKLKIAPGEDRVTLMTCTPYGVNTHRLLISGHRVAIPMPAPEPND VLDARNIALGVGLGILAAGLFIIWLADDTRAACIIRHGAFWPWMRRKGESANDTLA
Specific function: Unknown
COG id: COG3764
COG function: function code M; Sortase (surface protein transpeptidase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40699; Mature: 40568
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLHRRSTSKRASQEMRENNAAMPDATSANDNVSSACPEPAAFAPTPFDEVIDISDLVA CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHH ERRRLQRNLWAMRIITIVLLIAAIAVACFPLALQFESDRNLAATTATTAKEVAGWPYPQA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEHHHHHHHHCCCCCCCC EDKLTEARTYNKKLAESGQPILGEAVDPFSAAQGGSQASGEDSVSKKDKEYQSLLSTGNG HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC VMGTIRVPKQSINLPIYHGTSEEALASGAGHLYGTSLPVGGKSTHSVITGHRGLVEALMF EEEEEECCHHHCCEEEEECCCHHHHHCCCCCEEECCCCCCCCCCCHHHHCCHHHHHHHHH TRLDEVKEGDFFYIEVMGETLGYKVDRISVILPDDTSKLKIAPGEDRVTLMTCTPYGVNT HHHHHHCCCCEEEEEEECHHHCEEEEEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCC HRLLISGHRVAIPMPAPEPNDVLDARNIALGVGLGILAAGLFIIWLADDTRAACIIRHGA EEEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECCC FWPWMRRKGESANDTLA CCHHHHHCCCCCCCCCC >Mature Secondary Structure ALLHRRSTSKRASQEMRENNAAMPDATSANDNVSSACPEPAAFAPTPFDEVIDISDLVA CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHH ERRRLQRNLWAMRIITIVLLIAAIAVACFPLALQFESDRNLAATTATTAKEVAGWPYPQA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEHHHHHHHHCCCCCCCC EDKLTEARTYNKKLAESGQPILGEAVDPFSAAQGGSQASGEDSVSKKDKEYQSLLSTGNG HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC VMGTIRVPKQSINLPIYHGTSEEALASGAGHLYGTSLPVGGKSTHSVITGHRGLVEALMF EEEEEECCHHHCCEEEEECCCHHHHHCCCCCEEECCCCCCCCCCCHHHHCCHHHHHHHHH TRLDEVKEGDFFYIEVMGETLGYKVDRISVILPDDTSKLKIAPGEDRVTLMTCTPYGVNT HHHHHHCCCCEEEEEEECHHHCEEEEEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCC HRLLISGHRVAIPMPAPEPNDVLDARNIALGVGLGILAAGLFIIWLADDTRAACIIRHGA EEEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECCC FWPWMRRKGESANDTLA CCHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA