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The map label for this gene is yliC [C]

Identifier: 213690976

GI number: 213690976

Start: 61198

End: 62169

Strand: Direct

Name: yliC [C]

Synonym: Blon_0054

Alternate gene names: 213690976

Gene position: 61198-62169 (Clockwise)

Preceding gene: 213690975

Following gene: 213690977

Centisome position: 2.16

GC content: 54.53

Gene sequence:

>972_bases
ATGTTGCGATATACGTTACGGCGATTCGCCCAGATGGTGTTCATGCTTTTCCTGCTTTCCATCCTGGTGTTTTTCCTCTT
TGCGTTGATGCCCGGTGATTTCTTCTCGGGAAACAGGAAGCTGAAACCCGCTCGACTGGCTGAGCTGCGCGCATTATACG
GACTTGATCAGCCCACCATCGTTCGCTACTTCATATGGCTGAAGAACGTCTTCCACGGTGACTTCGGATGGTCGTTGCAA
TACAATGAGCCGGTCACGCGCCTCCTGAAGACGTACATGATGAATTCCTTCATCGTCGCTTTGGCCGCTGTGGTCATTGC
GTGGACCGTTGCTGTGGTCATTGGCGTGTTCTCCGCGACTCACCAATACTCTCTGGTCGATAAACTGGTCACTGTTGTCG
TCTTCGCCTCATTGTCGTTCCCTTCCTTCTTCATCGGTCTGCTGGCCATCAAATTTTTCGCGGTCGATCTTCGTTGGCTG
CCGACCGGAGGCATGGTCGATACGGGGTCGAACAGTACCGGGTTCGCGTATGTTCTTGAGGTATTGCGGCACATGATCAT
GCCGACACTACTGTTGGCGTTCTTCTCAGCCGGTTCGTTGACCCGCTATTTCCGTTCCGGAATGTTGGATGTGCTGCGCA
TGGATTTTGTCCGTTGCGCGCGCGCCCGCGGCATCTCCGAGCGGTCGGTCGTTTTCGGCCATGCGCTGAGAAACGCCTTG
TTGCCGGCTATCACGCTGCTTGCCTTCGAGATTCCCGGATTGTTCTCAGGCGCGATCATCACCGAACAGATATTCAATTG
GCCGGGTATCGGCAGCATTCAGCTGGCGGCCTTGAACGCGCGTGACTATGAGGTGCTGATGACTTGTACGCTGCTGCTGT
CGTTTTTAACGATTCTGGCCAATTTCCTGGCCGACATCATGTATGCCGCTGCGGATCCACGTGTCCGGTTGGCGCAGAAA
GTTCAGGGTTGA

Upstream 100 bases:

>100_bases
CGTCGTGGCCCCTTGCGAGGTCGGCTTGGGGCCACAACGTTCTGCGGTGTTTGGATACGCCGCTGTGATTGTTGATCATG
CCTGAAAGGAAATTCGGTTC

Downstream 100 bases:

>100_bases
CATGGAACTACGTCGCAGTGAATCACGATCACGGTCGCAGCGATCAGCCAATGGGGGAAAGATGCGGAATTCTGGCGTTC
GACCGTTATGGTATCGCAAT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MLRYTLRRFAQMVFMLFLLSILVFFLFALMPGDFFSGNRKLKPARLAELRALYGLDQPTIVRYFIWLKNVFHGDFGWSLQ
YNEPVTRLLKTYMMNSFIVALAAVVIAWTVAVVIGVFSATHQYSLVDKLVTVVVFASLSFPSFFIGLLAIKFFAVDLRWL
PTGGMVDTGSNSTGFAYVLEVLRHMIMPTLLLAFFSAGSLTRYFRSGMLDVLRMDFVRCARARGISERSVVFGHALRNAL
LPAITLLAFEIPGLFSGAIITEQIFNWPGIGSIQLAALNARDYEVLMTCTLLLSFLTILANFLADIMYAAADPRVRLAQK
VQG

Sequences:

>Translated_323_residues
MLRYTLRRFAQMVFMLFLLSILVFFLFALMPGDFFSGNRKLKPARLAELRALYGLDQPTIVRYFIWLKNVFHGDFGWSLQ
YNEPVTRLLKTYMMNSFIVALAAVVIAWTVAVVIGVFSATHQYSLVDKLVTVVVFASLSFPSFFIGLLAIKFFAVDLRWL
PTGGMVDTGSNSTGFAYVLEVLRHMIMPTLLLAFFSAGSLTRYFRSGMLDVLRMDFVRCARARGISERSVVFGHALRNAL
LPAITLLAFEIPGLFSGAIITEQIFNWPGIGSIQLAALNARDYEVLMTCTLLLSFLTILANFLADIMYAAADPRVRLAQK
VQG
>Mature_323_residues
MLRYTLRRFAQMVFMLFLLSILVFFLFALMPGDFFSGNRKLKPARLAELRALYGLDQPTIVRYFIWLKNVFHGDFGWSLQ
YNEPVTRLLKTYMMNSFIVALAAVVIAWTVAVVIGVFSATHQYSLVDKLVTVVVFASLSFPSFFIGLLAIKFFAVDLRWL
PTGGMVDTGSNSTGFAYVLEVLRHMIMPTLLLAFFSAGSLTRYFRSGMLDVLRMDFVRCARARGISERSVVFGHALRNAL
LPAITLLAFEIPGLFSGAIITEQIFNWPGIGSIQLAALNARDYEVLMTCTLLLSFLTILANFLADIMYAAADPRVRLAQK
VQG

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=33.75, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=32.1428571428571, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1787497, Length=317, Percent_Identity=34.384858044164, Blast_Score=190, Evalue=9e-50,
Organism=Escherichia coli, GI1789888, Length=321, Percent_Identity=34.5794392523364, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=32.3170731707317, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI1788504, Length=292, Percent_Identity=29.4520547945205, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=27.2388059701493, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36255; Mature: 36255

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRYTLRRFAQMVFMLFLLSILVFFLFALMPGDFFSGNRKLKPARLAELRALYGLDQPTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHH
VRYFIWLKNVFHGDFGWSLQYNEPVTRLLKTYMMNSFIVALAAVVIAWTVAVVIGVFSAT
HHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HQYSLVDKLVTVVVFASLSFPSFFIGLLAIKFFAVDLRWLPTGGMVDTGSNSTGFAYVLE
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHH
VLRHMIMPTLLLAFFSAGSLTRYFRSGMLDVLRMDFVRCARARGISERSVVFGHALRNAL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LPAITLLAFEIPGLFSGAIITEQIFNWPGIGSIQLAALNARDYEVLMTCTLLLSFLTILA
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
NFLADIMYAAADPRVRLAQKVQG
HHHHHHHHHCCCCHHHHHHHCCC
>Mature Secondary Structure
MLRYTLRRFAQMVFMLFLLSILVFFLFALMPGDFFSGNRKLKPARLAELRALYGLDQPTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHH
VRYFIWLKNVFHGDFGWSLQYNEPVTRLLKTYMMNSFIVALAAVVIAWTVAVVIGVFSAT
HHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HQYSLVDKLVTVVVFASLSFPSFFIGLLAIKFFAVDLRWLPTGGMVDTGSNSTGFAYVLE
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHH
VLRHMIMPTLLLAFFSAGSLTRYFRSGMLDVLRMDFVRCARARGISERSVVFGHALRNAL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LPAITLLAFEIPGLFSGAIITEQIFNWPGIGSIQLAALNARDYEVLMTCTLLLSFLTILA
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
NFLADIMYAAADPRVRLAQKVQG
HHHHHHHHHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA