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The map label for this gene is psd

Identifier: 213159120

GI number: 213159120

Start: 3952664

End: 3953515

Strand: Reverse

Name: psd

Synonym: AB57_3830

Alternate gene names: 213159120

Gene position: 3953515-3952664 (Counterclockwise)

Preceding gene: 213159121

Following gene: 213159119

Centisome position: 97.61

GC content: 39.2

Gene sequence:

>852_bases
TTGAGTTTTACATCTCGCTTAAAAAAAGAATTATTTATTAAGGCACAAAATCTTGTTCCTCAGCATCAGTTAAGTCGTGT
AGTGGGTAAAGTTGCTGCAAGTGAAAATCCAATTTTAAAAGCTGCTGTTATTCATGCATTTAAAACCAAATACGGCATTG
ATTTATCAATTGCTGAACAAGGCAATGCACTGAAATATAAATCTTTTAATGATTTCTTTACCCGTGCATTGAAAGACGGC
GTACGTTTAGTTGATGAAAATCCGGATAGTATTGTTTCACCAGCGGATGGCGCGATTTCTCAAATTGGTAAAATCACTGC
GGGCGAAGTATTTCAAGCAAAAGGCCAAAGTTTCTCTGTAGAAAAGTTAATTGGCGATCCACAACTTGCTCAGCCTTTCC
AAGAAGGTGAGTTTGCAACGGTTTATCTTTCTCCACGTGATTATCACCGTGTTCATATGCCATTTTCAGGCACATTAACT
GAAACGTTATATGTACCGGGTGAGTTATTTTCAGTAAATCAGGTGACTGCTGAAAATGTACCGGGATTATTTGCCCGTAA
TGAGCGTATGGTTTGTTTGTTTGATACTGAGCTTGGTCGTATGGCCGTTGTTTTGGTTGGCGCTATGATTGTGGCAGGTA
TTGAAACTGTGGCAACAGGTAAAGTAAAACCGTCGGGTCGTATCGAATTACAGCATCATGAGTTGAAGTTAGAGAAAGGT
GCTGAGCTTGGACGTTTTTATTTAGGTTCTACTGCAATTATTTTATTTGAAAAAGATAAAATCGAGTGGGAAAAGCGTTT
TAAAGCCGAGTCCGTTGTTGTCATGGGCGAACGTATGGGCCATACGCTTTAA

Upstream 100 bases:

>100_bases
TGGCTAGACTTTTAGGTTGGGAAGCAAAAGCCTATGATGGTGCGTGGAGTGAATGGGGCAATCGCCTCGATAGTCCTATC
ATTACTGGAGAATCGCCGTC

Downstream 100 bases:

>100_bases
CCCATCAATAGATTTAAAAAGAGAGCATTTGCTCTCTTTTTTATTTTCTATGGATGGGTATTTCTATGCTTAAAGTCTAG
ATTTAGTGGGAATAGTCATC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSFTSRLKKELFIKAQNLVPQHQLSRVVGKVAASENPILKAAVIHAFKTKYGIDLSIAEQGNALKYKSFNDFFTRALKDG
VRLVDENPDSIVSPADGAISQIGKITAGEVFQAKGQSFSVEKLIGDPQLAQPFQEGEFATVYLSPRDYHRVHMPFSGTLT
ETLYVPGELFSVNQVTAENVPGLFARNERMVCLFDTELGRMAVVLVGAMIVAGIETVATGKVKPSGRIELQHHELKLEKG
AELGRFYLGSTAIILFEKDKIEWEKRFKAESVVVMGERMGHTL

Sequences:

>Translated_283_residues
MSFTSRLKKELFIKAQNLVPQHQLSRVVGKVAASENPILKAAVIHAFKTKYGIDLSIAEQGNALKYKSFNDFFTRALKDG
VRLVDENPDSIVSPADGAISQIGKITAGEVFQAKGQSFSVEKLIGDPQLAQPFQEGEFATVYLSPRDYHRVHMPFSGTLT
ETLYVPGELFSVNQVTAENVPGLFARNERMVCLFDTELGRMAVVLVGAMIVAGIETVATGKVKPSGRIELQHHELKLEKG
AELGRFYLGSTAIILFEKDKIEWEKRFKAESVVVMGERMGHTL
>Mature_282_residues
SFTSRLKKELFIKAQNLVPQHQLSRVVGKVAASENPILKAAVIHAFKTKYGIDLSIAEQGNALKYKSFNDFFTRALKDGV
RLVDENPDSIVSPADGAISQIGKITAGEVFQAKGQSFSVEKLIGDPQLAQPFQEGEFATVYLSPRDYHRVHMPFSGTLTE
TLYVPGELFSVNQVTAENVPGLFARNERMVCLFDTELGRMAVVLVGAMIVAGIETVATGKVKPSGRIELQHHELKLEKGA
ELGRFYLGSTAIILFEKDKIEWEKRFKAESVVVMGERMGHTL

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=297, Percent_Identity=29.2929292929293, Blast_Score=110, Evalue=1e-24,
Organism=Escherichia coli, GI1790604, Length=278, Percent_Identity=45.6834532374101, Blast_Score=245, Evalue=3e-66,
Organism=Caenorhabditis elegans, GI71980843, Length=250, Percent_Identity=30.4, Blast_Score=110, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI71980840, Length=250, Percent_Identity=30.4, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6321609, Length=255, Percent_Identity=30.1960784313725, Blast_Score=104, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6324160, Length=160, Percent_Identity=31.875, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24649526, Length=319, Percent_Identity=29.4670846394984, Blast_Score=117, Evalue=9e-27,
Organism=Drosophila melanogaster, GI24649528, Length=319, Percent_Identity=29.4670846394984, Blast_Score=117, Evalue=9e-27,
Organism=Drosophila melanogaster, GI24649524, Length=319, Percent_Identity=29.4670846394984, Blast_Score=117, Evalue=9e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_ACIB3 (B7GUX2)

Other databases:

- EMBL:   CP001172
- RefSeq:   YP_002324044.1
- GeneID:   7060687
- GenomeReviews:   CP001172_GR
- KEGG:   abb:ABBFA_000103
- HOGENOM:   HBG302256
- OMA:   YFDQDLH
- ProtClustDB:   PRK00044
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 31273; Mature: 31141

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTSRLKKELFIKAQNLVPQHQLSRVVGKVAASENPILKAAVIHAFKTKYGIDLSIAEQ
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECC
GNALKYKSFNDFFTRALKDGVRLVDENPDSIVSPADGAISQIGKITAGEVFQAKGQSFSV
CCEEEECCHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCCCEEH
EKLIGDPQLAQPFQEGEFATVYLSPRDYHRVHMPFSGTLTETLYVPGELFSVNQVTAENV
HHHCCCCHHHCCCCCCCEEEEEECCCCCEEEECCCCCCCEEEEECCCCEEECCCCHHCCC
PGLFARNERMVCLFDTELGRMAVVLVGAMIVAGIETVATGKVKPSGRIELQHHELKLEKG
CCCEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHEEEECCC
AELGRFYLGSTAIILFEKDKIEWEKRFKAESVVVMGERMGHTL
CCCCEEEECCEEEEEEECCCCHHHHHHCCCEEEEEEHHCCCCC
>Mature Secondary Structure 
SFTSRLKKELFIKAQNLVPQHQLSRVVGKVAASENPILKAAVIHAFKTKYGIDLSIAEQ
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECC
GNALKYKSFNDFFTRALKDGVRLVDENPDSIVSPADGAISQIGKITAGEVFQAKGQSFSV
CCEEEECCHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCCCEEH
EKLIGDPQLAQPFQEGEFATVYLSPRDYHRVHMPFSGTLTETLYVPGELFSVNQVTAENV
HHHCCCCHHHCCCCCCCEEEEEECCCCCEEEECCCCCCCEEEEECCCCEEECCCCHHCCC
PGLFARNERMVCLFDTELGRMAVVLVGAMIVAGIETVATGKVKPSGRIELQHHELKLEKG
CCCEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHEEEECCC
AELGRFYLGSTAIILFEKDKIEWEKRFKAESVVVMGERMGHTL
CCCCEEEECCEEEEEEECCCCHHHHHHCCCEEEEEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA