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The map label for this gene is yebA [H]

Identifier: 213159068

GI number: 213159068

Start: 3898089

End: 3898781

Strand: Reverse

Name: yebA [H]

Synonym: AB57_3778

Alternate gene names: 213159068

Gene position: 3898781-3898089 (Counterclockwise)

Preceding gene: 213159070

Following gene: 213159067

Centisome position: 96.25

GC content: 41.85

Gene sequence:

>693_bases
ATGCACACGCGTCGTATTTTATTAGCGTTTTCACTTGCCGCTTCGGCAGCATCGGTTGCTTTTGCAGATTATCAAAATAT
TAACCAATCTACTGATTCAGATCGATTGGAACAGTTATCAAAAACACTATCTCAAGGCTCATATACTCATCCTGATGATT
TAGATCTTCCGGCGAGTGCAAAAGTTTCAGTGACTTTACGTGAGAAAACAGTTGAACTCAACAATGATTCACTGGCAAAG
AAATACGGCACAACGACAGCTAAAAACTCATTTAAAACCTCTTCTTCAAATCCTTATTCTTGGTTAGTTTCTCATCCTCT
TCCTGATACAGTACGTGTTTCTTCTAACTTTGGTGGTCGTACCATGGGTGGTCGTGCAGAGCATCATGGTGGTTTAGATA
TGGCTGCACCAAGTGGTACGCCAATCTATGCCACTGGTCCGGGTATTGTGACTAAATCAGGCTGGGGCACAGGTTATGGC
CAATATGTTGAAATTAACCATGGTAATGGTTATTTAACACGTTATGCGCATGCTTCACGCTTAATGGTTCGGGTAGGTGA
TCAGGTTTCTGCGGGTGACCATATTGCTAATGTTGGTTGTACAGGCCGCTGTACTGGTCCACATTTACATTACGAAGTAG
TTAAAGATGGTCAACGTAAGAATCCATCAACTTACTTAGCAATGTTGCCTTAA

Upstream 100 bases:

>100_bases
TCTCAAATGGTTTCTTGTCCTAATCTTAAGCGTTCATTTCAACCGATATCAAGGAAGAGATCATAAGGAACTTGAGTAAG
AACAGTTTCAAGAGGTTTTT

Downstream 100 bases:

>100_bases
TTACATTGCCTCCAAGGTCAAGGTTATTAAATTTATGAATTTGAAATTAACTTAAACCTTTTTTAACGTAATGATTGTAT
AAAAAAACGCCTTTATTGGC

Product: peptidase, M23/M37 family (EsvJ)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MHTRRILLAFSLAASAASVAFADYQNINQSTDSDRLEQLSKTLSQGSYTHPDDLDLPASAKVSVTLREKTVELNNDSLAK
KYGTTTAKNSFKTSSSNPYSWLVSHPLPDTVRVSSNFGGRTMGGRAEHHGGLDMAAPSGTPIYATGPGIVTKSGWGTGYG
QYVEINHGNGYLTRYAHASRLMVRVGDQVSAGDHIANVGCTGRCTGPHLHYEVVKDGQRKNPSTYLAMLP

Sequences:

>Translated_230_residues
MHTRRILLAFSLAASAASVAFADYQNINQSTDSDRLEQLSKTLSQGSYTHPDDLDLPASAKVSVTLREKTVELNNDSLAK
KYGTTTAKNSFKTSSSNPYSWLVSHPLPDTVRVSSNFGGRTMGGRAEHHGGLDMAAPSGTPIYATGPGIVTKSGWGTGYG
QYVEINHGNGYLTRYAHASRLMVRVGDQVSAGDHIANVGCTGRCTGPHLHYEVVKDGQRKNPSTYLAMLP
>Mature_230_residues
MHTRRILLAFSLAASAASVAFADYQNINQSTDSDRLEQLSKTLSQGSYTHPDDLDLPASAKVSVTLREKTVELNNDSLAK
KYGTTTAKNSFKTSSSNPYSWLVSHPLPDTVRVSSNFGGRTMGGRAEHHGGLDMAAPSGTPIYATGPGIVTKSGWGTGYG
QYVEINHGNGYLTRYAHASRLMVRVGDQVSAGDHIANVGCTGRCTGPHLHYEVVKDGQRKNPSTYLAMLP

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=132, Percent_Identity=43.9393939393939, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI87082297, Length=96, Percent_Identity=37.5, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789099, Length=120, Percent_Identity=35.8333333333333, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082174, Length=97, Percent_Identity=39.1752577319588, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 24702; Mature: 24702

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTRRILLAFSLAASAASVAFADYQNINQSTDSDRLEQLSKTLSQGSYTHPDDLDLPASA
CCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
KVSVTLREKTVELNNDSLAKKYGTTTAKNSFKTSSSNPYSWLVSHPLPDTVRVSSNFGGR
EEEEEEEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCC
TMGGRAEHHGGLDMAAPSGTPIYATGPGIVTKSGWGTGYGQYVEINHGNGYLTRYAHASR
CCCCCCCCCCCCEECCCCCCEEEEECCCEEEECCCCCCCCEEEEEECCCCEEEEHHHHHE
LMVRVGDQVSAGDHIANVGCTGRCTGPHLHYEVVKDGQRKNPSTYLAMLP
EEEEECCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEECC
>Mature Secondary Structure
MHTRRILLAFSLAASAASVAFADYQNINQSTDSDRLEQLSKTLSQGSYTHPDDLDLPASA
CCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
KVSVTLREKTVELNNDSLAKKYGTTTAKNSFKTSSSNPYSWLVSHPLPDTVRVSSNFGGR
EEEEEEEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCC
TMGGRAEHHGGLDMAAPSGTPIYATGPGIVTKSGWGTGYGQYVEINHGNGYLTRYAHASR
CCCCCCCCCCCCEECCCCCCEEEEECCCEEEECCCCCCCCEEEEEECCCCEEEEHHHHHE
LMVRVGDQVSAGDHIANVGCTGRCTGPHLHYEVVKDGQRKNPSTYLAMLP
EEEEECCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]