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The map label for this gene is araC [C]

Identifier: 213158998

GI number: 213158998

Start: 3818786

End: 3819619

Strand: Direct

Name: araC [C]

Synonym: AB57_3705

Alternate gene names: 213158998

Gene position: 3818786-3819619 (Clockwise)

Preceding gene: 213158996

Following gene: 213159000

Centisome position: 94.28

GC content: 30.34

Gene sequence:

>834_bases
GTGCAAAATGACTTAGATTTACTTTATAGAAAATCCAAAAGTTATGTATGGGGGAATAGCAACCTTAGTGACGTGCTGAA
TCAACCCTTATCTTTAGCGTACTGCTCATTGATATTTATTAAGCAAGGTAGTGCTGATATTAATATTTTATTTAAAAACT
ACCACTTAAAATCAGGTGATTTTTTATTTTTGTCGGAAGATTCATTGGCAATACTACAAAAACGATCTGCCGATTTTTCT
TGTGATTATTGTATTTTTAATCGTGACTTTGCCGCAGAAGTTGCATCTGTCTTACCAAATTCTTTATTTACTTATCTACA
TTTATTCCCTCATTTTTCACCAGAAATGAGCTACCAATCCTTAATTAAAACATGGATAAATCAGACCACTTTTATCCTAC
AATCAACCTCTGAATATCAACGCATCTTACTATGTAATCATCTTCAGAATTTCTTTTTGGTTCTTTCTGAAACAGTCAAT
CGTGAAAAACTTTTGTCTAAAAATGAATATAGTAGAAAAGAAAAAATTTGCTGGCAATTTTGGGAAATGATCTCATTACA
TTGTAAAGAACATCGTGATGTAAATTTTTACGCCAAAGCTTTAAATATTACTCCCTATTATCTATCTAAATTATCGAAAC
AATTTTTTAACGATAACGCAAAAACTTTAATTGATCGGCAAGTAATTCTTAAATTAAAAGAATTATTACGCACTCCTTCA
AATTCTATTCAAAGTATTGCTGATCAACTGAATTTTGAAGATACCTCCTATATGTGCCGTTATTTTAAAAAGCATACTGG
TTTTACCTTACTTCAATATCGTAAAAGCGCCTAA

Upstream 100 bases:

>100_bases
GGCATCGACAAAGTGTTCCCATCACCGTATTTTGATAATTTAGGTACTTTTTAAAACAAATCTATTAAAGTTAGAAATTT
TGATAGGAGCGATTAGAGTA

Downstream 100 bases:

>100_bases
ACAATCACGCTTAGGTCTCTCTTTTAAAAATTACTCAGACAATGCTAATAATTTCTGAACATACTGAACGGCACTGTTAT
CTATTTCTTGGTGAGTTGGA

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator AraC Family; AraC-Type Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC/XylS Family Transcriptional Regulator; AraC-Family Regulatory Protein; AraC Family Regulatory Helix-Turn-Helix Protein; AraC Family Regulatory Protein; AraC-Family Transcriptional Regulator; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MQNDLDLLYRKSKSYVWGNSNLSDVLNQPLSLAYCSLIFIKQGSADINILFKNYHLKSGDFLFLSEDSLAILQKRSADFS
CDYCIFNRDFAAEVASVLPNSLFTYLHLFPHFSPEMSYQSLIKTWINQTTFILQSTSEYQRILLCNHLQNFFLVLSETVN
REKLLSKNEYSRKEKICWQFWEMISLHCKEHRDVNFYAKALNITPYYLSKLSKQFFNDNAKTLIDRQVILKLKELLRTPS
NSIQSIADQLNFEDTSYMCRYFKKHTGFTLLQYRKSA

Sequences:

>Translated_277_residues
MQNDLDLLYRKSKSYVWGNSNLSDVLNQPLSLAYCSLIFIKQGSADINILFKNYHLKSGDFLFLSEDSLAILQKRSADFS
CDYCIFNRDFAAEVASVLPNSLFTYLHLFPHFSPEMSYQSLIKTWINQTTFILQSTSEYQRILLCNHLQNFFLVLSETVN
REKLLSKNEYSRKEKICWQFWEMISLHCKEHRDVNFYAKALNITPYYLSKLSKQFFNDNAKTLIDRQVILKLKELLRTPS
NSIQSIADQLNFEDTSYMCRYFKKHTGFTLLQYRKSA
>Mature_277_residues
MQNDLDLLYRKSKSYVWGNSNLSDVLNQPLSLAYCSLIFIKQGSADINILFKNYHLKSGDFLFLSEDSLAILQKRSADFS
CDYCIFNRDFAAEVASVLPNSLFTYLHLFPHFSPEMSYQSLIKTWINQTTFILQSTSEYQRILLCNHLQNFFLVLSETVN
REKLLSKNEYSRKEKICWQFWEMISLHCKEHRDVNFYAKALNITPYYLSKLSKQFFNDNAKTLIDRQVILKLKELLRTPS
NSIQSIADQLNFEDTSYMCRYFKKHTGFTLLQYRKSA

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32641; Mature: 32641

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNDLDLLYRKSKSYVWGNSNLSDVLNQPLSLAYCSLIFIKQGSADINILFKNYHLKSGD
CCCCHHHHHHHCCCEEECCCCHHHHHCCCHHHHHHHHHEEECCCCCEEEEEEEEEECCCC
FLFLSEDSLAILQKRSADFSCDYCIFNRDFAAEVASVLPNSLFTYLHLFPHFSPEMSYQS
EEEECCCCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
LIKTWINQTTFILQSTSEYQRILLCNHLQNFFLVLSETVNREKLLSKNEYSRKEKICWQF
HHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHH
WEMISLHCKEHRDVNFYAKALNITPYYLSKLSKQFFNDNAKTLIDRQVILKLKELLRTPS
HHHHHHHHHCCCCCEEEEHEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
NSIQSIADQLNFEDTSYMCRYFKKHTGFTLLQYRKSA
HHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEHEECCC
>Mature Secondary Structure
MQNDLDLLYRKSKSYVWGNSNLSDVLNQPLSLAYCSLIFIKQGSADINILFKNYHLKSGD
CCCCHHHHHHHCCCEEECCCCHHHHHCCCHHHHHHHHHEEECCCCCEEEEEEEEEECCCC
FLFLSEDSLAILQKRSADFSCDYCIFNRDFAAEVASVLPNSLFTYLHLFPHFSPEMSYQS
EEEECCCCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
LIKTWINQTTFILQSTSEYQRILLCNHLQNFFLVLSETVNREKLLSKNEYSRKEKICWQF
HHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHH
WEMISLHCKEHRDVNFYAKALNITPYYLSKLSKQFFNDNAKTLIDRQVILKLKELLRTPS
HHHHHHHHHCCCCCEEEEHEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
NSIQSIADQLNFEDTSYMCRYFKKHTGFTLLQYRKSA
HHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA