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The map label for this gene is rpoZ [H]

Identifier: 213158927

GI number: 213158927

Start: 3733639

End: 3733917

Strand: Direct

Name: rpoZ [H]

Synonym: AB57_3628

Alternate gene names: 213158927

Gene position: 3733639-3733917 (Clockwise)

Preceding gene: 213158926

Following gene: 213158928

Centisome position: 92.18

GC content: 41.22

Gene sequence:

>279_bases
ATGGCACGCGTCACCGTTGAAGATTGTTTAGATCATGTAGACAACCGTTTTGAGCTTGTGCTCGTTGCAAGTAAACGTGC
TCGTCAATTGGCACGTCAAGGCATGGAGCCAACTGTAGAATGGGATAACGACAAACCAACAGTTGTTGCTTTACGTGAAA
TCGCTGTAGGTCACGTAACGAAAGAAATTCTTAAACAACGTGAGCAAGATTACCAAACTTCTAGTCTTGATCTTGCCCTT
TCTACAAACAGCTTAAATTTAGAAGGTTTTTCTTTCTAA

Upstream 100 bases:

>100_bases
TGATTACTCCACAACCAAAACAGGAATAACTTGAGTCTGGAACGAAAGCCTTTTATACTATTTAGTCTGTTCAAATTTAC
CATTCCAAAACGAGAACTTT

Downstream 100 bases:

>100_bases
TTATTCCTGTTTCTATAAAAAACCATCGTTTTTTTGCGATGGTTTTTTATTTGGCTTATGCATATTTAAAACATATTGGT
AAAAGCAATTATTTTCATTG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 92; Mature: 91

Protein sequence:

>92_residues
MARVTVEDCLDHVDNRFELVLVASKRARQLARQGMEPTVEWDNDKPTVVALREIAVGHVTKEILKQREQDYQTSSLDLAL
STNSLNLEGFSF

Sequences:

>Translated_92_residues
MARVTVEDCLDHVDNRFELVLVASKRARQLARQGMEPTVEWDNDKPTVVALREIAVGHVTKEILKQREQDYQTSSLDLAL
STNSLNLEGFSF
>Mature_91_residues
ARVTVEDCLDHVDNRFELVLVASKRARQLARQGMEPTVEWDNDKPTVVALREIAVGHVTKEILKQREQDYQTSSLDLALS
TNSLNLEGFSF

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

Organism=Escherichia coli, GI1790081, Length=64, Percent_Identity=54.6875, Blast_Score=73, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 10445; Mature: 10314

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCLDHVDNRFELVLVASKRARQLARQGMEPTVEWDNDKPTVVALREIAVGHVT
CCEEEHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCEEECCCCCCEEHHHHHHHHHHH
KEILKQREQDYQTSSLDLALSTNSLNLEGFSF
HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCLDHVDNRFELVLVASKRARQLARQGMEPTVEWDNDKPTVVALREIAVGHVT
CEEEHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCEEECCCCCCEEHHHHHHHHHHH
KEILKQREQDYQTSSLDLALSTNSLNLEGFSF
HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA