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The map label for this gene is ydhP [H]

Identifier: 213158763

GI number: 213158763

Start: 4018272

End: 4019462

Strand: Direct

Name: ydhP [H]

Synonym: AB57_3897

Alternate gene names: 213158763

Gene position: 4018272-4019462 (Clockwise)

Preceding gene: 213158762

Following gene: 213158766

Centisome position: 99.2

GC content: 45.59

Gene sequence:

>1191_bases
ATGAACACTCAATCAAATACGGCGTTCTCGTTATTGGCATTGGCAATAGGTGCCTTTGCCATTGGCACCACGGAATTTTC
TCCAATGGGGTTACTTCCGAACATCGCTAATGATTTAGGGATTTCAATTCCAACAGCCGGTATGTTAATTACAGGCTATG
CACTTGGCGTAATGCTAGGTGCACCGTTTATGACCCTGTGGTTTGGTGGTTTTGCACGACGTAATGCGCTTATTTTTTTG
ATGGCGATCTTTACGATCGGTAACCTGATTGCAGCGTTTTCACCAAATTATATGAGCTTATTAGGTGCACGTCTCATTAC
AAGCCTGAACCACGGTGCCTTTTTCGGAATTGGTTCTGTTGTGGCAGCGAGTATTGTACCAGCGCATAAACAGGCTAGTG
CAGTGGCAACCATGTTTATGGGCTTAACCATTGCCAATATTGGTGGTGTGCCTTTAGCAACATGGGTTGGGCAAAACATT
GGCTGGCGTATGTCTTTCCTTGCGATTTCCGTGCTCGGCATCATTACTATGCTCGCTTTGTGGAAAGCATTACCGCAAGG
TATGGTTGACCCAAAACCAAACGTGAAGGCCGAGTTAAAAGTATTAACGCGTACCCCTGTGGTTCTTGCATTACTCACTA
CCGTACTCGGTGCAGGTGCAATGTTTACGCTCTACACCTATATTGCGCCAAGTTTGACTGAGTTTACGCATGCTTCACCA
ACCTTCATTACGTTCATGTTGGTGTTGATCGGTGTCGGCTTCTCGATTGGTAACCATTTAGGTGGCCGTTTTGCAGACTT
ATCTATCAATAAAACTCTGATTGGTTTCTTGGTACTGTTGATTGTGATGATGGTGACTTTCCCAATTCTTGCTCAAAGCC
AGATTGGAGCAGCCATTGCGTTGGTGATATGGGGTGCAGCAACCTTTGCTTTAGTACCACCATTACAAATGCGGGTAATG
TCAGTTGCTCATGAAGCTCCAGGGCTTGCCTCTTCAGTAAATATCGGTGCGTTTAACCTAGGTAATGCAGTAGGTGCCGC
TGCAGGCGCGTTAGTACTCGATTTAGGTTGGGGTTATAGTGCAGTATCTTTTGCGGGTGCCTTACTGGCGGGATTAGGTT
TGTTATTGGTTTTATTCCAAATCAAACGAGAAAGCAGCCCCGCTCAAACCTTACAACAGTGTTCAGACTAA

Upstream 100 bases:

>100_bases
ATCGAGTTAACTGCGGCTGAAATGCAAATGATTGCCGAACTCGACCGTAACAGTCGTGAAGTTAGCCCAGAGCCATGGGC
ACCAGTTTGGGACTAAACTC

Downstream 100 bases:

>100_bases
TAAAAAAAGCGCCTGAGATCAGGCGCTTTTTTTAGCTTATTTATTTTAAAATTTCCGGCAACTTAGGTTGCTCATAAATC
GGGTTCATTACTTCCCGTTT

Product: major facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MNTQSNTAFSLLALAIGAFAIGTTEFSPMGLLPNIANDLGISIPTAGMLITGYALGVMLGAPFMTLWFGGFARRNALIFL
MAIFTIGNLIAAFSPNYMSLLGARLITSLNHGAFFGIGSVVAASIVPAHKQASAVATMFMGLTIANIGGVPLATWVGQNI
GWRMSFLAISVLGIITMLALWKALPQGMVDPKPNVKAELKVLTRTPVVLALLTTVLGAGAMFTLYTYIAPSLTEFTHASP
TFITFMLVLIGVGFSIGNHLGGRFADLSINKTLIGFLVLLIVMMVTFPILAQSQIGAAIALVIWGAATFALVPPLQMRVM
SVAHEAPGLASSVNIGAFNLGNAVGAAAGALVLDLGWGYSAVSFAGALLAGLGLLLVLFQIKRESSPAQTLQQCSD

Sequences:

>Translated_396_residues
MNTQSNTAFSLLALAIGAFAIGTTEFSPMGLLPNIANDLGISIPTAGMLITGYALGVMLGAPFMTLWFGGFARRNALIFL
MAIFTIGNLIAAFSPNYMSLLGARLITSLNHGAFFGIGSVVAASIVPAHKQASAVATMFMGLTIANIGGVPLATWVGQNI
GWRMSFLAISVLGIITMLALWKALPQGMVDPKPNVKAELKVLTRTPVVLALLTTVLGAGAMFTLYTYIAPSLTEFTHASP
TFITFMLVLIGVGFSIGNHLGGRFADLSINKTLIGFLVLLIVMMVTFPILAQSQIGAAIALVIWGAATFALVPPLQMRVM
SVAHEAPGLASSVNIGAFNLGNAVGAAAGALVLDLGWGYSAVSFAGALLAGLGLLLVLFQIKRESSPAQTLQQCSD
>Mature_396_residues
MNTQSNTAFSLLALAIGAFAIGTTEFSPMGLLPNIANDLGISIPTAGMLITGYALGVMLGAPFMTLWFGGFARRNALIFL
MAIFTIGNLIAAFSPNYMSLLGARLITSLNHGAFFGIGSVVAASIVPAHKQASAVATMFMGLTIANIGGVPLATWVGQNI
GWRMSFLAISVLGIITMLALWKALPQGMVDPKPNVKAELKVLTRTPVVLALLTTVLGAGAMFTLYTYIAPSLTEFTHASP
TFITFMLVLIGVGFSIGNHLGGRFADLSINKTLIGFLVLLIVMMVTFPILAQSQIGAAIALVIWGAATFALVPPLQMRVM
SVAHEAPGLASSVNIGAFNLGNAVGAAAGALVLDLGWGYSAVSFAGALLAGLGLLLVLFQIKRESSPAQTLQQCSD

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=376, Percent_Identity=67.8191489361702, Blast_Score=478, Evalue=1e-136,
Organism=Escherichia coli, GI1786595, Length=382, Percent_Identity=34.8167539267016, Blast_Score=207, Evalue=8e-55,
Organism=Escherichia coli, GI1787808, Length=386, Percent_Identity=30.8290155440415, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI145693198, Length=332, Percent_Identity=28.3132530120482, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41192; Mature: 41192

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS00027 HOMEOBOX_1 ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTQSNTAFSLLALAIGAFAIGTTEFSPMGLLPNIANDLGISIPTAGMLITGYALGVMLG
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHC
APFMTLWFGGFARRNALIFLMAIFTIGNLIAAFSPNYMSLLGARLITSLNHGAFFGIGSV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH
VAASIVPAHKQASAVATMFMGLTIANIGGVPLATWVGQNIGWRMSFLAISVLGIITMLAL
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
WKALPQGMVDPKPNVKAELKVLTRTPVVLALLTTVLGAGAMFTLYTYIAPSLTEFTHASP
HHHHHCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCH
TFITFMLVLIGVGFSIGNHLGGRFADLSINKTLIGFLVLLIVMMVTFPILAQSQIGAAIA
HHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVIWGAATFALVPPLQMRVMSVAHEAPGLASSVNIGAFNLGNAVGAAAGALVLDLGWGYS
HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHEEECCCCHH
AVSFAGALLAGLGLLLVLFQIKRESSPAQTLQQCSD
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MNTQSNTAFSLLALAIGAFAIGTTEFSPMGLLPNIANDLGISIPTAGMLITGYALGVMLG
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHC
APFMTLWFGGFARRNALIFLMAIFTIGNLIAAFSPNYMSLLGARLITSLNHGAFFGIGSV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH
VAASIVPAHKQASAVATMFMGLTIANIGGVPLATWVGQNIGWRMSFLAISVLGIITMLAL
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
WKALPQGMVDPKPNVKAELKVLTRTPVVLALLTTVLGAGAMFTLYTYIAPSLTEFTHASP
HHHHHCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCH
TFITFMLVLIGVGFSIGNHLGGRFADLSINKTLIGFLVLLIVMMVTFPILAQSQIGAAIA
HHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVIWGAATFALVPPLQMRVMSVAHEAPGLASSVNIGAFNLGNAVGAAAGALVLDLGWGYS
HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHEEECCCCHH
AVSFAGALLAGLGLLLVLFQIKRESSPAQTLQQCSD
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]