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The map label for this gene is yocS [H]

Identifier: 213158740

GI number: 213158740

Start: 4000205

End: 4001143

Strand: Reverse

Name: yocS [H]

Synonym: AB57_3874

Alternate gene names: 213158740

Gene position: 4001143-4000205 (Counterclockwise)

Preceding gene: 213158741

Following gene: 213158739

Centisome position: 98.78

GC content: 43.24

Gene sequence:

>939_bases
ATGTCTGCATTACTCCGTTTTACTCAGTTTGTTCAAAAGACGTTTGCCCTATGGGTAATTATTTTTGCAGCTCTGGCGCT
ATGGCAGCCTGAATTTTTTGTTTGGCTGAAAGCTTATATTCCATGGATTTTGGGCATTATTATGCTTGGCATGGGAATGA
CCATGACCGTTGATGATTTTAAAGGGGTACTACAAAGCCCTAAAGCCGTGTTAATTGGGGTTGTCGCGCAGTTTGTGGTG
ATGCCGGGCTTGGCATTTATTTTATGTAAATTATTTAATTTGCCTCCTGAAATTGCGGTCGGCGTTATTTTAGTCGGTTG
TTGCCCAGGAGGAACAGCTTCAAATGTCATTACCTATATGGCCAAAGGCAATGTGGCTTTATCGGTCGCCTGTACCTCGG
TATCAACACTCTTGGCTCCTGTGTTAACACCTGCAATTTTCTATCTACTCGCCAGCCAATGGCTAAAGATTGACGCGGCT
TCGATGTTTATTTCGATTTTGCAAGTCGTACTACTTCCGATTGTGATTGGGCTGATTTTGCGAACTTGGCTTAAACGTCA
GGTTGAATCCTATATTCAAGTCATGCCATTAGTTTCAGTGATTGCAATTGTAGCGATTGTGGCAGCCATTATTGGTGGCA
GTAAAGCAGCTATTTTACAGTCGGGTTTGCTTATTTTGGCTGTGGTGATTTTACATAATGGGCTTGGATATTTATTAGGT
TTTACCGCAGCGCGTTTCTTTAAATTGCCTTATGCGGACAGTAAGGCGATTGCTATTGAGGTGGGAATGCAAAACTCAGG
CTTAGGCGTGGCGCTTGCAGCAGTGCATTTTGCGGCTTCTCCGATTACAGCGGTACCAAGTGCTATTTTCAGCCTTTGGC
ATAATATTTCGGGTCCTGCACTTGCGACTTATTGGGCAAGTAAACACAAACAAGAATAA

Upstream 100 bases:

>100_bases
AGGTGTTGTTCGTATTCAATCGACTGATCTGTTGAATGAATGCTAGAGATACTGATTTTGATGCTTGGACTTTAATTGCG
ATTTGGTATGGATGAACAGT

Downstream 100 bases:

>100_bases
CTATATAAACAACATACATGACAAAAGAAGGCCAAACAGATAGTTTGGTCTTTTTATTTAAAGCACTTTTTATTTGAGCT
GAATTTAAAACTGGTATGTC

Product: bile acid:sodium symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MSALLRFTQFVQKTFALWVIIFAALALWQPEFFVWLKAYIPWILGIIMLGMGMTMTVDDFKGVLQSPKAVLIGVVAQFVV
MPGLAFILCKLFNLPPEIAVGVILVGCCPGGTASNVITYMAKGNVALSVACTSVSTLLAPVLTPAIFYLLASQWLKIDAA
SMFISILQVVLLPIVIGLILRTWLKRQVESYIQVMPLVSVIAIVAIVAAIIGGSKAAILQSGLLILAVVILHNGLGYLLG
FTAARFFKLPYADSKAIAIEVGMQNSGLGVALAAVHFAASPITAVPSAIFSLWHNISGPALATYWASKHKQE

Sequences:

>Translated_312_residues
MSALLRFTQFVQKTFALWVIIFAALALWQPEFFVWLKAYIPWILGIIMLGMGMTMTVDDFKGVLQSPKAVLIGVVAQFVV
MPGLAFILCKLFNLPPEIAVGVILVGCCPGGTASNVITYMAKGNVALSVACTSVSTLLAPVLTPAIFYLLASQWLKIDAA
SMFISILQVVLLPIVIGLILRTWLKRQVESYIQVMPLVSVIAIVAIVAAIIGGSKAAILQSGLLILAVVILHNGLGYLLG
FTAARFFKLPYADSKAIAIEVGMQNSGLGVALAAVHFAASPITAVPSAIFSLWHNISGPALATYWASKHKQE
>Mature_311_residues
SALLRFTQFVQKTFALWVIIFAALALWQPEFFVWLKAYIPWILGIIMLGMGMTMTVDDFKGVLQSPKAVLIGVVAQFVVM
PGLAFILCKLFNLPPEIAVGVILVGCCPGGTASNVITYMAKGNVALSVACTSVSTLLAPVLTPAIFYLLASQWLKIDAAS
MFISILQVVLLPIVIGLILRTWLKRQVESYIQVMPLVSVIAIVAIVAAIIGGSKAAILQSGLLILAVVILHNGLGYLLGF
TAARFFKLPYADSKAIAIEVGMQNSGLGVALAAVHFAASPITAVPSAIFSLWHNISGPALATYWASKHKQE

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=252, Percent_Identity=31.3492063492063, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI4506971, Length=245, Percent_Identity=29.7959183673469, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI215422368, Length=233, Percent_Identity=30.4721030042918, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI215422370, Length=232, Percent_Identity=29.7413793103448, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI9790143, Length=232, Percent_Identity=29.7413793103448, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI37537552, Length=243, Percent_Identity=24.6913580246914, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI24308414, Length=262, Percent_Identity=29.0076335877863, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI58219066, Length=236, Percent_Identity=28.8135593220339, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI115533076, Length=109, Percent_Identity=36.697247706422, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI18859699, Length=236, Percent_Identity=27.9661016949153, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33372; Mature: 33241

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCC
>Mature Secondary Structure 
SALLRFTQFVQKTFALWVIIFAALALWQPEFFVWLKAYIPWILGIIMLGMGMTMTVDDF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHH
KGVLQSPKAVLIGVVAQFVVMPGLAFILCKLFNLPPEIAVGVILVGCCPGGTASNVITYM
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCHHHHHHHH
AKGNVALSVACTSVSTLLAPVLTPAIFYLLASQWLKIDAASMFISILQVVLLPIVIGLIL
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTWLKRQVESYIQVMPLVSVIAIVAIVAAIIGGSKAAILQSGLLILAVVILHNGLGYLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
FTAARFFKLPYADSKAIAIEVGMQNSGLGVALAAVHFAASPITAVPSAIFSLWHNISGPA
HHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
LATYWASKHKQE
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]