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The map label for this gene is yhjC [H]

Identifier: 213158702

GI number: 213158702

Start: 2747629

End: 2748660

Strand: Reverse

Name: yhjC [H]

Synonym: AB57_2660

Alternate gene names: 213158702

Gene position: 2748660-2747629 (Counterclockwise)

Preceding gene: 213158703

Following gene: 213158701

Centisome position: 67.86

GC content: 41.38

Gene sequence:

>1032_bases
GTGGATCTATTTCATGCCATGAGAGTATTCAACAAAGTTGTTGAAACAAATAGTTTCAGTTTAGCAGCTGATAGTTTGGG
TTTACCGCGTGCTTCTGTGACTACAACCATTCAGGCTTTAGAGAAGCATTTACAAGTTCGATTGCTTAATCGGACAACAC
GAAAAATTAGTCTCACACCGGATGGCGCCGTATATTATGATCGGACAGCCCGTATTTTAGCGGATGTTGCCGATATTGAA
TCTTCTTTTCATGATGCAGAGCGGGGGCCAAGAGGTCAGCTTCGTATTGATGTGCCTGTATCGATTGGACGTTTAATTTT
AATTCCAAGGCTCCGCGATTTTCATGCACGCTATCCTGATATTGATTTAGTGATTGGTCTGAATGACCGACCTGTAGATT
TGGTTGGAGAAGCTGTTGATTGTGCAATTCGGGTGGGTGAATTAAAAGATTCAAGCTTAATTGCGCGTCGTATCGGAACT
TTCCAGTGTGCAACCGCTGCTTCACCGATTTATTTAGAAAAATATGGCGAACCTACCTCAATTGAAGATTTGCAAAAAAA
TCATAAAGCGATTCACTTCTTTTCAAGCCGTACCGGACGCAACTTCGATTGGGACTTTGTGGTTGATGATTTAATTAAAA
GTGTGTCAGTACGTGGACGTGTTTCGGTAAATGACGGTGATGCTTATATCGACTTGGCTTTGCAAGGTTTTGGTATAATT
CAAGGCCCACGTTATATGCTCACCAACCATTTAGAATCAGGTTTGTTAAAAGAGGTATTGCCTCGGTGGACGCCAGCACC
GATGCCGATTTCAGCAGTTTATCTTCAAAATCGTCATTTATCGCTTAAAGTAAAAGTGTTTGTAGATTGGGTCGCTGAAC
TTTTTGCAGGCTGTCCATTACTTGGCGGTACAGCTTTACCTTTCGACCAGAAATGTGAATTTGCCTGTGATAAAGAAACT
GGTCATGAATATACAATTCGTACTTTGGTCGAGCAGCATAATATTGCTGAAGCTTATACGCTCAAAACTTAA

Upstream 100 bases:

>100_bases
TGTCAATCACGAATAAATATATTAAATTTGATAACACTATTCGTATTTTTATAACAATTGATGTGTTTGCACTAGAAAAT
GCATTAATAGGAGTGTGCGT

Downstream 100 bases:

>100_bases
TCTTAAAATTTGATTGATTTTTCAACATTTAATCCGTCAATACCGATCATTGCTTAGACATCTTCATAAATCCTTAACTT
ATGGTATAGAAATTGCTGTT

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MDLFHAMRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYYDRTARILADVADIE
SSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIGLNDRPVDLVGEAVDCAIRVGELKDSSLIARRIGT
FQCATAASPIYLEKYGEPTSIEDLQKNHKAIHFFSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGII
QGPRYMLTNHLESGLLKEVLPRWTPAPMPISAVYLQNRHLSLKVKVFVDWVAELFAGCPLLGGTALPFDQKCEFACDKET
GHEYTIRTLVEQHNIAEAYTLKT

Sequences:

>Translated_343_residues
MDLFHAMRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYYDRTARILADVADIE
SSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIGLNDRPVDLVGEAVDCAIRVGELKDSSLIARRIGT
FQCATAASPIYLEKYGEPTSIEDLQKNHKAIHFFSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGII
QGPRYMLTNHLESGLLKEVLPRWTPAPMPISAVYLQNRHLSLKVKVFVDWVAELFAGCPLLGGTALPFDQKCEFACDKET
GHEYTIRTLVEQHNIAEAYTLKT
>Mature_343_residues
MDLFHAMRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYYDRTARILADVADIE
SSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIGLNDRPVDLVGEAVDCAIRVGELKDSSLIARRIGT
FQCATAASPIYLEKYGEPTSIEDLQKNHKAIHFFSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGII
QGPRYMLTNHLESGLLKEVLPRWTPAPMPISAVYLQNRHLSLKVKVFVDWVAELFAGCPLLGGTALPFDQKCEFACDKET
GHEYTIRTLVEQHNIAEAYTLKT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=38.3561643835616, Blast_Score=215, Evalue=3e-57,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=35.5704697986577, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=33.2214765100671, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=30.6338028169014, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=31.7567567567568, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=31.1188811188811, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787589, Length=281, Percent_Identity=28.4697508896797, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=26.7716535433071, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788706, Length=261, Percent_Identity=24.1379310344828, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788748, Length=171, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=114, Percent_Identity=35.0877192982456, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 38378; Mature: 38378

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFHAMRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTP
CCHHHHHHHHHHHHHCCCCEEEHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECC
DGAVYYDRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPD
CCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCHHHHHCCCCC
IDLVIGLNDRPVDLVGEAVDCAIRVGELKDSSLIARRIGTFQCATAASPIYLEKYGEPTS
EEEEEECCCCCHHHHHHHHHHEEEECCCCCHHHHHHHHCCEEEHHCCCCEEEECCCCCCC
IEDLQKNHKAIHFFSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGII
HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEECCEEE
QGPRYMLTNHLESGLLKEVLPRWTPAPMPISAVYLQNRHLSLKVKVFVDWVAELFAGCPL
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEHHHHHHHHHHHCCCC
LGGTALPFDQKCEFACDKETGHEYTIRTLVEQHNIAEAYTLKT
CCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MDLFHAMRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTP
CCHHHHHHHHHHHHHCCCCEEEHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECC
DGAVYYDRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPD
CCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCHHHHHCCCCC
IDLVIGLNDRPVDLVGEAVDCAIRVGELKDSSLIARRIGTFQCATAASPIYLEKYGEPTS
EEEEEECCCCCHHHHHHHHHHEEEECCCCCHHHHHHHHCCEEEHHCCCCEEEECCCCCCC
IEDLQKNHKAIHFFSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGII
HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEECCEEE
QGPRYMLTNHLESGLLKEVLPRWTPAPMPISAVYLQNRHLSLKVKVFVDWVAELFAGCPL
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEHHHHHHHHHHHCCCC
LGGTALPFDQKCEFACDKETGHEYTIRTLVEQHNIAEAYTLKT
CCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]