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The map label for this gene is ybfI [H]

Identifier: 213158628

GI number: 213158628

Start: 2674593

End: 2675429

Strand: Direct

Name: ybfI [H]

Synonym: AB57_2582

Alternate gene names: 213158628

Gene position: 2674593-2675429 (Clockwise)

Preceding gene: 213158627

Following gene: 213158629

Centisome position: 66.03

GC content: 37.63

Gene sequence:

>837_bases
ATGAGTAGTAACTGGGTGGATATTTCAAAAGATACCAATACGGGTATCGAAACAATCCGTGCTCATTTTACTGGCCATGC
TTATGATCCCCATTGGCATTCAAGTTATTTAATTGGTGTAACTGAATCTGGCATTCAACAATTTCATTGCCGTAAAAAGC
AAATCAATAGTCATGCTGGGCAAGTCTTTATGCTTGAGCCAGAAGAAATTCATGATGGACATGCGCCTGCATCTGATGGT
TTTACCTACCAAATGCTTTATCTACACCCAGAATGGTTAAAGCAACGCCTTCAAGGTTTATTTCACAACAGCCCCGATCA
TTACGAACTAGTGATTGATGCGCCATTAAAATCCGATGAACAACTCGCAATCATTACTTCACAAGCATTTCGACACTTAC
ACTATAAAGAAATGAATATTGTGAAAGACAATAGTCTAGATGTGCTGATTCAATATATTGCCCAAGGTAAATGGTTAAAA
AAAGCTTCTCAATCTTCTTGTATTCATGTACCCCAAATCGCCCATCAAATCCGAGATATTCTGCATGATCATTTATTTGA
AGATATTGGGTTAGAAGATATATCACGTATGGTGGGACTAGACCGTTACCATATTCACCGTATTTTTAAATCCACTTTTC
ATTTAGCTCCTCATCAATATCTTATTCAACTAAGACTTACACGAGCACGTGATTTACTCGCTAGAAGTATTTCTCCAGCA
CAAGTTGCTTCTGACTTATGTTTTTCAGACCAAAGTCATTTAAGTCGTTGGTTTAAGCGCTGTTATGGACTAACACCAGC
CGCTTACAGAAAAATCTGCACAAATCTTCAAGATTAA

Upstream 100 bases:

>100_bases
CACTAAATTTTTAAAGTTTTTGCACAAATCTTCTAGAACTAATTTTAGCTCTTTTATACTGTTTCAGGGGCTAAAATTAA
AAGTTTATAGGTCAGTGCTT

Downstream 100 bases:

>100_bases
AAATCTTAATTATTTCATCTTGTCTCTCCCAATTAACTAAGGTAGACAAGATGGAAAACCTCACTGCATTTTCATTATTT
GCAATTGTTGCCTCAATTAC

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSSNWVDISKDTNTGIETIRAHFTGHAYDPHWHSSYLIGVTESGIQQFHCRKKQINSHAGQVFMLEPEEIHDGHAPASDG
FTYQMLYLHPEWLKQRLQGLFHNSPDHYELVIDAPLKSDEQLAIITSQAFRHLHYKEMNIVKDNSLDVLIQYIAQGKWLK
KASQSSCIHVPQIAHQIRDILHDHLFEDIGLEDISRMVGLDRYHIHRIFKSTFHLAPHQYLIQLRLTRARDLLARSISPA
QVASDLCFSDQSHLSRWFKRCYGLTPAAYRKICTNLQD

Sequences:

>Translated_278_residues
MSSNWVDISKDTNTGIETIRAHFTGHAYDPHWHSSYLIGVTESGIQQFHCRKKQINSHAGQVFMLEPEEIHDGHAPASDG
FTYQMLYLHPEWLKQRLQGLFHNSPDHYELVIDAPLKSDEQLAIITSQAFRHLHYKEMNIVKDNSLDVLIQYIAQGKWLK
KASQSSCIHVPQIAHQIRDILHDHLFEDIGLEDISRMVGLDRYHIHRIFKSTFHLAPHQYLIQLRLTRARDLLARSISPA
QVASDLCFSDQSHLSRWFKRCYGLTPAAYRKICTNLQD
>Mature_277_residues
SSNWVDISKDTNTGIETIRAHFTGHAYDPHWHSSYLIGVTESGIQQFHCRKKQINSHAGQVFMLEPEEIHDGHAPASDGF
TYQMLYLHPEWLKQRLQGLFHNSPDHYELVIDAPLKSDEQLAIITSQAFRHLHYKEMNIVKDNSLDVLIQYIAQGKWLKK
ASQSSCIHVPQIAHQIRDILHDHLFEDIGLEDISRMVGLDRYHIHRIFKSTFHLAPHQYLIQLRLTRARDLLARSISPAQ
VASDLCFSDQSHLSRWFKRCYGLTPAAYRKICTNLQD

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32228; Mature: 32097

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNWVDISKDTNTGIETIRAHFTGHAYDPHWHSSYLIGVTESGIQQFHCRKKQINSHAG
CCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCC
QVFMLEPEEIHDGHAPASDGFTYQMLYLHPEWLKQRLQGLFHNSPDHYELVIDAPLKSDE
EEEEECHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
QLAIITSQAFRHLHYKEMNIVKDNSLDVLIQYIAQGKWLKKASQSSCIHVPQIAHQIRDI
CEEEEHHHHHHHHHHHHHCEECCCCHHHHHHHHHCCHHHHHHCCCCCEEHHHHHHHHHHH
LHDHLFEDIGLEDISRMVGLDRYHIHRIFKSTFHLAPHQYLIQLRLTRARDLLARSISPA
HHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHH
QVASDLCFSDQSHLSRWFKRCYGLTPAAYRKICTNLQD
HHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
SSNWVDISKDTNTGIETIRAHFTGHAYDPHWHSSYLIGVTESGIQQFHCRKKQINSHAG
CCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCC
QVFMLEPEEIHDGHAPASDGFTYQMLYLHPEWLKQRLQGLFHNSPDHYELVIDAPLKSDE
EEEEECHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
QLAIITSQAFRHLHYKEMNIVKDNSLDVLIQYIAQGKWLKKASQSSCIHVPQIAHQIRDI
CEEEEHHHHHHHHHHHHHCEECCCCHHHHHHHHHCCHHHHHHCCCCCEEHHHHHHHHHHH
LHDHLFEDIGLEDISRMVGLDRYHIHRIFKSTFHLAPHQYLIQLRLTRARDLLARSISPA
HHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHH
QVASDLCFSDQSHLSRWFKRCYGLTPAAYRKICTNLQD
HHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]