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The map label for this gene is caf1A [H]

Identifier: 213158612

GI number: 213158612

Start: 2658840

End: 2661338

Strand: Reverse

Name: caf1A [H]

Synonym: AB57_2566

Alternate gene names: 213158612

Gene position: 2661338-2658840 (Counterclockwise)

Preceding gene: 213158613

Following gene: 213158611

Centisome position: 65.7

GC content: 39.58

Gene sequence:

>2499_bases
ATGATCCTTCGGCATAATAATTTATGCAAAAGTATTTTGCTGATTTTATTGTCGGGTGGATGTTTAAATATTCCAAATAC
TGTGTTCGCAGGCGATTTGCCTCCACCACCAAGAGACATTAATGAAATTAATCAACTTTTTAAACTGTACCTCGATTTAA
TTGTGAACCAGTATTCGGTCCAGCAAGTTGTGCCTGTTATTGTGAAAAATGATGAGTACTTCATACAAAAAGAGAAGCTG
ATTGATGAATTAGAAATTAAGATCCCTCAAGATTTATTAACAAACACTGACACATCTTTATCTAATCAAGATGTTTTGAC
ATTGGGGTTTAGTGGTGACGCGAGTGATTGGATATCTTTAGATAAATTAAAAGATGTAAGTTATGAATATCAATCTTCGA
ATCAATACTTTAAGCTCAATTTTCCGCCAGCTTGGATGCCCACTCAAGTTTTGGGTAAAGACTCATGGTATAAGCCGGAA
GTCGCTCAGTCTGGTATAGGGCTGCTCAATAACTATGATTTTTATACATATAGACCCTATCAAGGCGGTTCAACCAGTAG
TTTATTTACTGAGCAGCGTTTTTTCTCTCCGTTAGGGGTCATTAAAAACTCTGGTGTCTATGTCAAAAACCAATACAAAA
ATGAAGGTAACGCCGAGTCTGTAGATAATGACGGCTATCGTCGTTATGACACATCTTGGCAGTTTGATAACCAAAAGAAT
GCTACATCTTTTTTACTGGGTGACATTATTACCGGTAGTAAAACGACGTGGGGAAGTTCTGTTCGACTAGGCGGTTTTCA
GGTACAGAGAAACTATTCAACCCGACCAGATTTAATTACCTATCCATTGCCACAATTTATTGGGCAAGCTGCGTTGCCAA
GTACAGTCGACTTAATTATTAATGGGCAAAAGACCAGCTCAACAGAAGTACAGTCTGGACCGTTTATTTTAAATAATGTT
CCTTTTATTAACGGTAAAGGGGAAGCCGTTGTGGTTACGACTGATGCAGTCGGGCGTCAAGTCACAACATCGGTCCCATT
TTATATTTCTAATACTTTGCTCAAGCCCGGCTTATTTGATTACTCATTGTCTTTAGGAAAAATTCGAGAAGACTACGGAC
TTAAGAATTTTTCTTATGGAAAATTTGCAAGTACAGCCGATGCCCGTTATGGGGTAAATGACTGGCTGACTGTAGAAGGA
CGCACCGAACTTTCTTCAGATTTACAGTTATTGGGTGCTGGGTCTGTACTCAAGCTTGCAAATTTAGGTGTGCTGAGTGC
CTCTTTTACCCAAAGTAAAGCCGACAAATCTATGTCTGAAGATCGAACGAAAGACTTGGAAGGTAATCAATATACAGTTG
GATACAGCTATAACCGTAATCGGTTTGGTTTTAGCATTAACCATAACCAACGTGATGATGAATATACCGACCTTTCACGG
CTGCAATATAGCAATTTAATTTCAGTTAATAGCAATAAAAGCCTAACGGCCAATACTTATTTTGCCACTAAAAACTCAGG
AACTTTTGGCATTGGTTATATCAATACCAAGGCGAATGACTTTAAAAATCGCTTCTTAAATTTGTCTTGGGCGCCTGTTT
TACCGACTTATATGAATGGCGTGACTGTTTCATTAAGTGCCAACCGTGATTTCATCGAAAAAGAATGGAGTGCTGCATTT
CAGCTTTCGATACCGTTGTTTCAGCGAAACGCGACTGTTAACTCAGGTTATGCGTTTAATAAGCAGGGCGATACTGGCTA
CCTTAACTTCAACCGCTCTGTTCCGTCTGAAGGTGGTTTTGGTGTCGATTTAACCCGACGCTTTAATGAAAATAGTGAAG
ATTTAAATCAGGCACGTGTCAATTACCGCAACAGTTATATTAATACTGACTTTGGACTGTCTGGAAACCATGACTATAAC
TACTGGTTTGGCCTATCCGGTTCCCTGATTTATATGGCAGGAGATTTATTTGCCTCAAACCGATTAGGTGAGTCTTTTGC
ATTGATCGATACAAACCAAGTGCCTGATGTTTTGGTCAGATACGAAAACAGTTTAATTGGCCGCAGTAATAAAAAAGGCC
ATATTTTTGTGCCATCGGTCACGCCTTACTATTCGGGTAAATACAGCGTCGACCCAATCGACTTACCTTCAAACTTTACA
ATCACACAAGTTGAACAACGGATAGCGGCTAAACGCGGTTCGGGCGTTGTGATTAAGTTCCCTGTTCATCAGTCTATTTC
TGCCAATGTCTATTTGACTCAAGCAGATGGCAAACCTATGCCGGTAGGGTCTGTAGTACATAGAGCTGATCAAGAGTCTT
CTTATGTGGGAATGGATGGCATTGTCTATTTAGAAAATTTAAAACCGAATAACACCGTAACGGTTCAGCGTTCGGATCAA
AGTATTTGTAAAGCAGATTTTTCTGTAGATGTAGAACAAGCCAAGCAGCAGATTGTGGTGGTTAAACCTGTTACTTGTCA
CGAGGTATCTTTGCCATGA

Upstream 100 bases:

>100_bases
CAACGGCACATGAGTTGTCAAAAACATCTAAAATTTATGGTGTAGACAGTTCTGGTATTAAACAAGAATTGATCGAAATC
ACCAAAATGGAGGATCCATC

Downstream 100 bases:

>100_bases
ATATAAAAACAAAAAAATTACTCAGACATTTATGTATATTCTCTGGACTGATGTTGACAGGAAATATGGCTCATGCTGCA
TGTAGCGTGAGCGCTTCAGG

Product: CsuD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 832; Mature: 832

Protein sequence:

>832_residues
MILRHNNLCKSILLILLSGGCLNIPNTVFAGDLPPPPRDINEINQLFKLYLDLIVNQYSVQQVVPVIVKNDEYFIQKEKL
IDELEIKIPQDLLTNTDTSLSNQDVLTLGFSGDASDWISLDKLKDVSYEYQSSNQYFKLNFPPAWMPTQVLGKDSWYKPE
VAQSGIGLLNNYDFYTYRPYQGGSTSSLFTEQRFFSPLGVIKNSGVYVKNQYKNEGNAESVDNDGYRRYDTSWQFDNQKN
ATSFLLGDIITGSKTTWGSSVRLGGFQVQRNYSTRPDLITYPLPQFIGQAALPSTVDLIINGQKTSSTEVQSGPFILNNV
PFINGKGEAVVVTTDAVGRQVTTSVPFYISNTLLKPGLFDYSLSLGKIREDYGLKNFSYGKFASTADARYGVNDWLTVEG
RTELSSDLQLLGAGSVLKLANLGVLSASFTQSKADKSMSEDRTKDLEGNQYTVGYSYNRNRFGFSINHNQRDDEYTDLSR
LQYSNLISVNSNKSLTANTYFATKNSGTFGIGYINTKANDFKNRFLNLSWAPVLPTYMNGVTVSLSANRDFIEKEWSAAF
QLSIPLFQRNATVNSGYAFNKQGDTGYLNFNRSVPSEGGFGVDLTRRFNENSEDLNQARVNYRNSYINTDFGLSGNHDYN
YWFGLSGSLIYMAGDLFASNRLGESFALIDTNQVPDVLVRYENSLIGRSNKKGHIFVPSVTPYYSGKYSVDPIDLPSNFT
ITQVEQRIAAKRGSGVVIKFPVHQSISANVYLTQADGKPMPVGSVVHRADQESSYVGMDGIVYLENLKPNNTVTVQRSDQ
SICKADFSVDVEQAKQQIVVVKPVTCHEVSLP

Sequences:

>Translated_832_residues
MILRHNNLCKSILLILLSGGCLNIPNTVFAGDLPPPPRDINEINQLFKLYLDLIVNQYSVQQVVPVIVKNDEYFIQKEKL
IDELEIKIPQDLLTNTDTSLSNQDVLTLGFSGDASDWISLDKLKDVSYEYQSSNQYFKLNFPPAWMPTQVLGKDSWYKPE
VAQSGIGLLNNYDFYTYRPYQGGSTSSLFTEQRFFSPLGVIKNSGVYVKNQYKNEGNAESVDNDGYRRYDTSWQFDNQKN
ATSFLLGDIITGSKTTWGSSVRLGGFQVQRNYSTRPDLITYPLPQFIGQAALPSTVDLIINGQKTSSTEVQSGPFILNNV
PFINGKGEAVVVTTDAVGRQVTTSVPFYISNTLLKPGLFDYSLSLGKIREDYGLKNFSYGKFASTADARYGVNDWLTVEG
RTELSSDLQLLGAGSVLKLANLGVLSASFTQSKADKSMSEDRTKDLEGNQYTVGYSYNRNRFGFSINHNQRDDEYTDLSR
LQYSNLISVNSNKSLTANTYFATKNSGTFGIGYINTKANDFKNRFLNLSWAPVLPTYMNGVTVSLSANRDFIEKEWSAAF
QLSIPLFQRNATVNSGYAFNKQGDTGYLNFNRSVPSEGGFGVDLTRRFNENSEDLNQARVNYRNSYINTDFGLSGNHDYN
YWFGLSGSLIYMAGDLFASNRLGESFALIDTNQVPDVLVRYENSLIGRSNKKGHIFVPSVTPYYSGKYSVDPIDLPSNFT
ITQVEQRIAAKRGSGVVIKFPVHQSISANVYLTQADGKPMPVGSVVHRADQESSYVGMDGIVYLENLKPNNTVTVQRSDQ
SICKADFSVDVEQAKQQIVVVKPVTCHEVSLP
>Mature_832_residues
MILRHNNLCKSILLILLSGGCLNIPNTVFAGDLPPPPRDINEINQLFKLYLDLIVNQYSVQQVVPVIVKNDEYFIQKEKL
IDELEIKIPQDLLTNTDTSLSNQDVLTLGFSGDASDWISLDKLKDVSYEYQSSNQYFKLNFPPAWMPTQVLGKDSWYKPE
VAQSGIGLLNNYDFYTYRPYQGGSTSSLFTEQRFFSPLGVIKNSGVYVKNQYKNEGNAESVDNDGYRRYDTSWQFDNQKN
ATSFLLGDIITGSKTTWGSSVRLGGFQVQRNYSTRPDLITYPLPQFIGQAALPSTVDLIINGQKTSSTEVQSGPFILNNV
PFINGKGEAVVVTTDAVGRQVTTSVPFYISNTLLKPGLFDYSLSLGKIREDYGLKNFSYGKFASTADARYGVNDWLTVEG
RTELSSDLQLLGAGSVLKLANLGVLSASFTQSKADKSMSEDRTKDLEGNQYTVGYSYNRNRFGFSINHNQRDDEYTDLSR
LQYSNLISVNSNKSLTANTYFATKNSGTFGIGYINTKANDFKNRFLNLSWAPVLPTYMNGVTVSLSANRDFIEKEWSAAF
QLSIPLFQRNATVNSGYAFNKQGDTGYLNFNRSVPSEGGFGVDLTRRFNENSEDLNQARVNYRNSYINTDFGLSGNHDYN
YWFGLSGSLIYMAGDLFASNRLGESFALIDTNQVPDVLVRYENSLIGRSNKKGHIFVPSVTPYYSGKYSVDPIDLPSNFT
ITQVEQRIAAKRGSGVVIKFPVHQSISANVYLTQADGKPMPVGSVVHRADQESSYVGMDGIVYLENLKPNNTVTVQRSDQ
SICKADFSVDVEQAKQQIVVVKPVTCHEVSLP

Specific function: A probable role in capsular biogenesis. It is likely that the caf1A molecule binds F1 antigen subunits during the extracellular secretion process [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789533, Length=676, Percent_Identity=23.3727810650888, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1790772, Length=767, Percent_Identity=22.2946544980443, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787172, Length=642, Percent_Identity=21.8068535825545, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1789610, Length=534, Percent_Identity=22.8464419475655, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1786332, Length=653, Percent_Identity=21.4395099540582, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 92792; Mature: 92792

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILRHNNLCKSILLILLSGGCLNIPNTVFAGDLPPPPRDINEINQLFKLYLDLIVNQYSV
CEEECCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCHHHH
QQVVPVIVKNDEYFIQKEKLIDELEIKIPQDLLTNTDTSLSNQDVLTLGFSGDASDWISL
HHEEEEEECCCCCEEEHHHHHHHHHEECCHHHHCCCCCCCCCCCEEEEEECCCCCCCEEH
DKLKDVSYEYQSSNQYFKLNFPPAWMPTQVLGKDSWYKPEVAQSGIGLLNNYDFYTYRPY
HHHHCCCEEECCCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHCCCCHHCCCCCEEECCC
QGGSTSSLFTEQRFFSPLGVIKNSGVYVKNQYKNEGNAESVDNDGYRRYDTSWQFDNQKN
CCCCCHHHHHHHHHCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCC
ATSFLLGDIITGSKTTWGSSVRLGGFQVQRNYSTRPDLITYPLPQFIGQAALPSTVDLII
CHHEEEEHEECCCCCCCCCEEEECCEEEECCCCCCCCEEEECCHHHHCCCCCCCEEEEEE
NGQKTSSTEVQSGPFILNNVPFINGKGEAVVVTTDAVGRQVTTSVPFYISNTLLKPGLFD
ECCCCCCCCCCCCCEEECCCCEECCCCCEEEEEECCCCCEEEECCCCEEECCCCCCCCCE
YSLSLGKIREDYGLKNFSYGKFASTADARYGVNDWLTVEGRTELSSDLQLLGAGSVLKLA
EECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCEEEHH
NLGVLSASFTQSKADKSMSEDRTKDLEGNQYTVGYSYNRNRFGFSINHNQRDDEYTDLSR
CCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCCCHHHHHHH
LQYSNLISVNSNKSLTANTYFATKNSGTFGIGYINTKANDFKNRFLNLSWAPVLPTYMNG
HHHCCEEEECCCCCEEEEEEEEECCCCEEEEEEEECCCCHHHHHEECCEECCCCHHHHCC
VTVSLSANRDFIEKEWSAAFQLSIPLFQRNATVNSGYAFNKQGDTGYLNFNRSVPSEGGF
EEEEEECCCCHHHHHCCCEEEEEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCCCCCC
GVDLTRRFNENSEDLNQARVNYRNSYINTDFGLSGNHDYNYWFGLSGSLIYMAGDLFASN
CEEEEECCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEECCCCEEEEECCHHHCC
RLGESFALIDTNQVPDVLVRYENSLIGRSNKKGHIFVPSVTPYYSGKYSVDPIDLPSNFT
CCCCEEEEEECCCCCHHHHEECCHHCCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCCC
ITQVEQRIAAKRGSGVVIKFPVHQSISANVYLTQADGKPMPVGSVVHRADQESSYVGMDG
HHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCEECCCC
IVYLENLKPNNTVTVQRSDQSICKADFSVDVEQAKQQIVVVKPVTCHEVSLP
EEEEECCCCCCEEEEEECCCCHHHHCCCCCHHHCCCEEEEECCCEEECCCCC
>Mature Secondary Structure
MILRHNNLCKSILLILLSGGCLNIPNTVFAGDLPPPPRDINEINQLFKLYLDLIVNQYSV
CEEECCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCHHHH
QQVVPVIVKNDEYFIQKEKLIDELEIKIPQDLLTNTDTSLSNQDVLTLGFSGDASDWISL
HHEEEEEECCCCCEEEHHHHHHHHHEECCHHHHCCCCCCCCCCCEEEEEECCCCCCCEEH
DKLKDVSYEYQSSNQYFKLNFPPAWMPTQVLGKDSWYKPEVAQSGIGLLNNYDFYTYRPY
HHHHCCCEEECCCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHCCCCHHCCCCCEEECCC
QGGSTSSLFTEQRFFSPLGVIKNSGVYVKNQYKNEGNAESVDNDGYRRYDTSWQFDNQKN
CCCCCHHHHHHHHHCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCC
ATSFLLGDIITGSKTTWGSSVRLGGFQVQRNYSTRPDLITYPLPQFIGQAALPSTVDLII
CHHEEEEHEECCCCCCCCCEEEECCEEEECCCCCCCCEEEECCHHHHCCCCCCCEEEEEE
NGQKTSSTEVQSGPFILNNVPFINGKGEAVVVTTDAVGRQVTTSVPFYISNTLLKPGLFD
ECCCCCCCCCCCCCEEECCCCEECCCCCEEEEEECCCCCEEEECCCCEEECCCCCCCCCE
YSLSLGKIREDYGLKNFSYGKFASTADARYGVNDWLTVEGRTELSSDLQLLGAGSVLKLA
EECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCEEEHH
NLGVLSASFTQSKADKSMSEDRTKDLEGNQYTVGYSYNRNRFGFSINHNQRDDEYTDLSR
CCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCCCHHHHHHH
LQYSNLISVNSNKSLTANTYFATKNSGTFGIGYINTKANDFKNRFLNLSWAPVLPTYMNG
HHHCCEEEECCCCCEEEEEEEEECCCCEEEEEEEECCCCHHHHHEECCEECCCCHHHHCC
VTVSLSANRDFIEKEWSAAFQLSIPLFQRNATVNSGYAFNKQGDTGYLNFNRSVPSEGGF
EEEEEECCCCHHHHHCCCEEEEEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCCCCCC
GVDLTRRFNENSEDLNQARVNYRNSYINTDFGLSGNHDYNYWFGLSGSLIYMAGDLFASN
CEEEEECCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEECCCCEEEEECCHHHCC
RLGESFALIDTNQVPDVLVRYENSLIGRSNKKGHIFVPSVTPYYSGKYSVDPIDLPSNFT
CCCCEEEEEECCCCCHHHHEECCHHCCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCCC
ITQVEQRIAAKRGSGVVIKFPVHQSISANVYLTQADGKPMPVGSVVHRADQESSYVGMDG
HHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCEECCCC
IVYLENLKPNNTVTVQRSDQSICKADFSVDVEQAKQQIVVVKPVTCHEVSLP
EEEEECCCCCCEEEEEECCCCHHHHCCCCCHHHCCCEEEEECCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1551441; 9826348; 9748454; 11586360 [H]