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The map label for this gene is rnc [H]

Identifier: 213158242

GI number: 213158242

Start: 3057127

End: 3057594

Strand: Reverse

Name: rnc [H]

Synonym: AB57_2961

Alternate gene names: 213158242

Gene position: 3057594-3057127 (Counterclockwise)

Preceding gene: 213158243

Following gene: 213158241

Centisome position: 75.49

GC content: 40.81

Gene sequence:

>468_bases
ATGCGCGCGACTTTAGTACGTCAGGAAGCATTAGGTAAAATTGCAACCGATTTGCAACTTAGTCGGTGTTTAATATTAAG
CACAGGCGAGTTGAAATCTGGTGGTCATCATCGTGAGTCAATATTGGCTGACACAGTGGAGGCCATTATTGGTGCAATTT
ATCTTGATAGTAGTGATCTGAACCTACTCAAAGATATTGTGTTAAAATGGTATACGCCTTATTTAGATCATATTGAGCCA
ACAGATCAACTCAAGGATCCAAAATCACGTTTACAAGAGTATCTACAAGCACGTAAAAAACCTCTCCCTGTTTACGAGGT
TGTAGATATTCAGGGTGATGCGCCTCATCAGCACTTTAAAGTCGAATGTTTGGTAGATGGTTTATCAAAAATTCATGGTG
AGGGGTCAAGTCGTCGTTTTGCCGAGCAGGCAGCAGCGGCGGAAATTTTAAAGTTATTGGAGCAATAA

Upstream 100 bases:

>100_bases
CGAACGTCTGGAATTTTTGGGCGACTCACTGTTGGGGATGATTATCGCCAATTATTTATACCATGCGTACCCTCATGAAA
ATGAAGGGCGCTTAACGCGT

Downstream 100 bases:

>100_bases
CCTGCATGTCGATGCATTCTGATCAAATCAATCCAGATTCAAACGAAAACCAAGATCCAAACAATCTGATTGATCAATTT
TTTAGTTCCAAAGGCGTTAC

Product: ribonuclease III

Products: NA

Alternate protein names: Ribonuclease III; RNase III [H]

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEP
TDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ

Sequences:

>Translated_155_residues
MRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEP
TDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ
>Mature_155_residues
MRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEP
TDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ

Specific function: Digests double-stranded RNA. Involved in the processing of ribosomal RNA precursors and of some mRNAs [H]

COG id: COG0571

COG function: function code K; dsRNA-specific ribonuclease

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

Organism=Escherichia coli, GI1788920, Length=155, Percent_Identity=56.7741935483871, Blast_Score=157, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001159
- InterPro:   IPR014720
- InterPro:   IPR000999
- InterPro:   IPR011907 [H]

Pfam domain/function: PF00035 dsrm; PF00636 Ribonuclease_3 [H]

EC number: =3.1.26.3 [H]

Molecular weight: Translated: 17355; Mature: 17355

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50137 DS_RBD ; PS50142 RNASE_3_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSSDL
CCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
NLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFK
HHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH
VECLVDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSSDL
CCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
NLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFK
HHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH
VECLVDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA