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The map label for this gene is yedQ [H]

Identifier: 213158230

GI number: 213158230

Start: 3047595

End: 3049031

Strand: Direct

Name: yedQ [H]

Synonym: AB57_2949

Alternate gene names: 213158230

Gene position: 3047595-3049031 (Clockwise)

Preceding gene: 213158229

Following gene: 213158232

Centisome position: 75.24

GC content: 35.28

Gene sequence:

>1437_bases
ATGGAAACTTTAGATTCTTCAATTTTTGACCTCACCCCAATTCCAATGTGGATTGAAGACTTTAGTGAAGTTAAGCAGTT
ATTTGACTTATGGAGAAATCAAGGGGTTGAAAACTTATATGAATTTCTAAGTCAAAATGAAAATCTAGTGGTTGAATGTG
CTCATAAAATTAAAATTATTAAGGTCAACCAAAAAGTATTAGACCTTTTTGAAGCAAAAAACCAAGAAGAGTTATGTGCC
AACTTAAATCTTATTTTTAAAAAAGAAATGTTTGAAGCTCATATTCATGAACTCGAAGCCTTATGGAATGGCAAAACTCA
TTTCTCGAGTACCACTATAAATTACACGCTCTCTGGTAAACGTATTGATGTACAACTACGTGGAGCAATTTTACCGGGTT
CTGAAACTACGTTTGACCGTATTTTAATTACCACCGAAGACATTACACCGTATCAAAATGCACTTCGTCAGGAAGAGAAA
AATCGACGCCTAGCAGAGTCAATGTTTATCTACTCCCCAACTTCGCTTTGGGTTGAAGATTTTAGCCGTATTAAAAATAG
AATTGATCAGCTTAGGCTATTAGGAATTGAAGACTTTAGGACTTTTTTAGATGTACATCCTGAATTTGTTCGCCAATGCA
TAGAAGACATTTTAATTTTAGACGTCAATCAGTCGACTCTCGATTTATTTAAAGCACCAGATAAAACCACTCTGTTAAAA
AATACCCATAAAATTTTTGCCGAAGAGATGGTGGAAACTTTTAGAGAACAGCTGATTGAACTCTGGCAAGGAAATATTCA
CCACAAGCGTGAAGCCGTTAACTATGCGTTAGATGGCCAAATTAGAAATGTCTTATTGCAATTTACCGTATTCCCCGGTT
ATGAAGAGACTTGGGGATTGGTACAGGTTGCGCTTACAGATATTACTGCACGAAAGAAAGCCGAAAATTATCTAGAATAC
TTAGGCCAGCATGATGTACTGACCAAACTTTATAACCGAGCTTTTTTTACAGAAGAGCTTAATCGTTTAAATCGCAGTAT
TATTCGCCCTGTTTCTTCAATTTTTTTAGACATGAACGGCCTAAAGGAAACCAATGATCAACTTGGCCATGATATTGGTG
ATGGTTTATTACGTCGAGTAGGTAATATTTTAAATCAGGCAATTATGAATACTGCTTATACAGCTTCTCGAATCGGTGGC
GACGAATTTGTAATTTTAATGCCTGGTGCAGATGAAGCGAATGTTTTAATGATGCTGCAAACCATTCAGGAGCTTTTTAA
TATAGATAATCAATATTATTCAAGTCACCCTATTAGTATTGCGATTGGGCACGCCACAACAAAAGAAAATGAACAAGTTG
AAGATATGCTAAAACGCGCAGATCATCATATGTATCAAAAGAAAAAAAGTTATTATCAAGAAATTCTTCTACCATAA

Upstream 100 bases:

>100_bases
TTTTATTTTAATTATTCTAATAGATTTAAATCGATTATTTTCCCAAATCTTAGTTTTTCTCATTATACTTTAAGACAAAC
TGAATACTTAAAAGAAACGC

Downstream 100 bases:

>100_bases
AAAAACAGGCATATTGCCTGTTTTTTTATTTAAATTAGCGCTTACCCATAGAACGACGAGTACCACGCGGTGGCATCCAA
GTTCTATCTGCATATTGTTC

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
METLDSSIFDLTPIPMWIEDFSEVKQLFDLWRNQGVENLYEFLSQNENLVVECAHKIKIIKVNQKVLDLFEAKNQEELCA
NLNLIFKKEMFEAHIHELEALWNGKTHFSSTTINYTLSGKRIDVQLRGAILPGSETTFDRILITTEDITPYQNALRQEEK
NRRLAESMFIYSPTSLWVEDFSRIKNRIDQLRLLGIEDFRTFLDVHPEFVRQCIEDILILDVNQSTLDLFKAPDKTTLLK
NTHKIFAEEMVETFREQLIELWQGNIHHKREAVNYALDGQIRNVLLQFTVFPGYEETWGLVQVALTDITARKKAENYLEY
LGQHDVLTKLYNRAFFTEELNRLNRSIIRPVSSIFLDMNGLKETNDQLGHDIGDGLLRRVGNILNQAIMNTAYTASRIGG
DEFVILMPGADEANVLMMLQTIQELFNIDNQYYSSHPISIAIGHATTKENEQVEDMLKRADHHMYQKKKSYYQEILLP

Sequences:

>Translated_478_residues
METLDSSIFDLTPIPMWIEDFSEVKQLFDLWRNQGVENLYEFLSQNENLVVECAHKIKIIKVNQKVLDLFEAKNQEELCA
NLNLIFKKEMFEAHIHELEALWNGKTHFSSTTINYTLSGKRIDVQLRGAILPGSETTFDRILITTEDITPYQNALRQEEK
NRRLAESMFIYSPTSLWVEDFSRIKNRIDQLRLLGIEDFRTFLDVHPEFVRQCIEDILILDVNQSTLDLFKAPDKTTLLK
NTHKIFAEEMVETFREQLIELWQGNIHHKREAVNYALDGQIRNVLLQFTVFPGYEETWGLVQVALTDITARKKAENYLEY
LGQHDVLTKLYNRAFFTEELNRLNRSIIRPVSSIFLDMNGLKETNDQLGHDIGDGLLRRVGNILNQAIMNTAYTASRIGG
DEFVILMPGADEANVLMMLQTIQELFNIDNQYYSSHPISIAIGHATTKENEQVEDMLKRADHHMYQKKKSYYQEILLP
>Mature_478_residues
METLDSSIFDLTPIPMWIEDFSEVKQLFDLWRNQGVENLYEFLSQNENLVVECAHKIKIIKVNQKVLDLFEAKNQEELCA
NLNLIFKKEMFEAHIHELEALWNGKTHFSSTTINYTLSGKRIDVQLRGAILPGSETTFDRILITTEDITPYQNALRQEEK
NRRLAESMFIYSPTSLWVEDFSRIKNRIDQLRLLGIEDFRTFLDVHPEFVRQCIEDILILDVNQSTLDLFKAPDKTTLLK
NTHKIFAEEMVETFREQLIELWQGNIHHKREAVNYALDGQIRNVLLQFTVFPGYEETWGLVQVALTDITARKKAENYLEY
LGQHDVLTKLYNRAFFTEELNRLNRSIIRPVSSIFLDMNGLKETNDQLGHDIGDGLLRRVGNILNQAIMNTAYTASRIGG
DEFVILMPGADEANVLMMLQTIQELFNIDNQYYSSHPISIAIGHATTKENEQVEDMLKRADHHMYQKKKSYYQEILLP

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=268, Percent_Identity=27.6119402985075, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=33.5443037974684, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1788381, Length=179, Percent_Identity=27.9329608938547, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI145693134, Length=152, Percent_Identity=32.2368421052632, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787262, Length=156, Percent_Identity=28.2051282051282, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=26.8292682926829, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI87081974, Length=150, Percent_Identity=31.3333333333333, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788085, Length=155, Percent_Identity=27.0967741935484, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 55646; Mature: 55646

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLDSSIFDLTPIPMWIEDFSEVKQLFDLWRNQGVENLYEFLSQNENLVVECAHKIKII
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCEEEE
KVNQKVLDLFEAKNQEELCANLNLIFKKEMFEAHIHELEALWNGKTHFSSTTINYTLSGK
EECHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
RIDVQLRGAILPGSETTFDRILITTEDITPYQNALRQEEKNRRLAESMFIYSPTSLWVED
EEEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEECCHHHHHHH
FSRIKNRIDQLRLLGIEDFRTFLDVHPEFVRQCIEDILILDVNQSTLDLFKAPDKTTLLK
HHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHEECCCCHHHHHHCCCCCHHHHH
NTHKIFAEEMVETFREQLIELWQGNIHHKREAVNYALDGQIRNVLLQFTVFPGYEETWGL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHH
VQVALTDITARKKAENYLEYLGQHDVLTKLYNRAFFTEELNRLNRSIIRPVSSIFLDMNG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LKETNDQLGHDIGDGLLRRVGNILNQAIMNTAYTASRIGGDEFVILMPGADEANVLMMLQ
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
TIQELFNIDNQYYSSHPISIAIGHATTKENEQVEDMLKRADHHMYQKKKSYYQEILLP
HHHHHHCCCCHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
METLDSSIFDLTPIPMWIEDFSEVKQLFDLWRNQGVENLYEFLSQNENLVVECAHKIKII
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCEEEE
KVNQKVLDLFEAKNQEELCANLNLIFKKEMFEAHIHELEALWNGKTHFSSTTINYTLSGK
EECHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
RIDVQLRGAILPGSETTFDRILITTEDITPYQNALRQEEKNRRLAESMFIYSPTSLWVED
EEEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEECCHHHHHHH
FSRIKNRIDQLRLLGIEDFRTFLDVHPEFVRQCIEDILILDVNQSTLDLFKAPDKTTLLK
HHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHEECCCCHHHHHHCCCCCHHHHH
NTHKIFAEEMVETFREQLIELWQGNIHHKREAVNYALDGQIRNVLLQFTVFPGYEETWGL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHH
VQVALTDITARKKAENYLEYLGQHDVLTKLYNRAFFTEELNRLNRSIIRPVSSIFLDMNG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LKETNDQLGHDIGDGLLRRVGNILNQAIMNTAYTASRIGGDEFVILMPGADEANVLMMLQ
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
TIQELFNIDNQYYSSHPISIAIGHATTKENEQVEDMLKRADHHMYQKKKSYYQEILLP
HHHHHHCCCCHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA