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The map label for this gene is yciR [C]

Identifier: 213158060

GI number: 213158060

Start: 2838662

End: 2841298

Strand: Direct

Name: yciR [C]

Synonym: AB57_2772

Alternate gene names: 213158060

Gene position: 2838662-2841298 (Clockwise)

Preceding gene: 213158057

Following gene: 213158061

Centisome position: 70.08

GC content: 34.02

Gene sequence:

>2637_bases
ATGAGTTATCTATTTTTATCGTGTACAGAGCATTTCATTAAGAAAACAGATTTAGTGCTACAAGGCATTTGTTTGGCGTC
TGGAATTTTAATGGGAATAAATATCATTGTTCTGCATTTTTCCCTTCCTGACACTTTAATATCTGTTTCTGATGTTCATA
TCCTCATAGCATTATTTATTACCTCAGCCCACATAATTGGTCTTACATTTTTAACTCAACAACCTCGATATTTTTATTTA
CTCTTTATTCCAAGTACAGTTCCACTCATTATTGGACAGTTTACTCATTCTCAAATCACCCAACTCCCCTTTTACTTTGC
ATATAATTTAGCTTTCGTCGCAACTTTACTTTGTGCTTATGCAACTCAGCGTAACTATCAAAAAATTTCTCAACTATTAT
TTAAAAATAAACAACTTGTTCAAGTAGCAGAACAGCATACTCAATGGGCTGAAGAGTTATGTGTACAGCTCCAACAAGAA
GTAAATAAATCTAAAGATATTGAAGCACAGCTTCAATTTAATAATCATTTGCTCGAACAAAAAGTTCGGGAAAGGACATA
TGACCTCACTAAAATGAATGAGAGGCTTGAAAGCCATCATCATAATTTAGCATTTGCACATGAAACAGCAGGTATCCGAC
CGTGGGATTGGGATATTGAGAAACAAAAATTAGAAATAACGTTTTTTGATCAACAAAAACAAACTCAAAATACTCCTTTA
CACCTCAAGTCAATTTTAGAGCGCATTCATCCCAATGACCGAAAGTTATTTGATGAACGTTTAAAAGAACACTTGGAAGG
AAAATCTGATCACTTCAATATTACCTTCCGTATTCTACGTCGTAATGGTTCGTGGCGTTGGATTCATGACGTAGGACGTG
TCATTAGCCGTGATCCTAAAACCAATAAAGCTTTACGTATGGTTGGAATGACCAGAGATATTCATCAGGAAAAAAAAGAT
CAAGAACATTTGAGACTTTCTGCGATTGTGCTTGAGCAGGCAGCTGAAGGAATTTTTATTCTAGATGAAAAACTCAACTA
TATTGAAGTTAACCCCTATTATGAGAAATTAACTGGCTTTTCAAAATCTGAATTATTAAGTCAGCAGCTATTTAATATCA
CAATAAATCAGAAGCTACAGCAACAACAATTTCACGACTCCATTACTCAACAACTTCTAAAAACTGGCGAATATATGGGC
CAATTTGATGAAAAGTTTACATCGGGTAAAAGTGTCTATTTATGGCTTCATATTAATGCAGTTAAAGATGAGTACAACCA
GATTATTAATTATATTGGTTTTGCACGTGATTTAACCGACCAAAAGCGACAAGAGCAGCATTTATCTTATTTAAAAAACT
ATGATAGTTTGACTCACCTTCCTAACCGCTTTTACTATTATAATCAATTACATCAATATCTTGTTAATCCATCTTATAGT
TTTAAAAATTTGGCTTTAATACGTATTAATATCGATAGATTTAGAGCATTTAATGAGTTTCTAAATAATGATAGTGGGGA
TGAGTTACTTAAACAATTTGCACAGCGACTACGACTGACCAATATCAATGCAATTTTAGTGGCTTACTTAAACGGTGATG
ATTTTGCAATTATTTATGAAATATCACCTATTCATCCCAACATTGAGCAATATTGCCAAAATATATTACAAGCTTTAAAT
GCGCCTTTTTATATTGATGAACAAGAATATTTCATTACAGCTTCTATTGGGGTTGCTTGTTTCCCTGAGCATGGCCGACA
AATTGATCACCTCAACAATCATGCCGAACAAGCCTTGTCGGAAGCAAAACGTTTAGGTGGCAACACTATTAGCTATTATT
GTAATAAAACTACAAACCCATATAAGACAGCAGACTTAGAACAAGAGTTGCGTAAAGCCATTCAAAATGATGAATTTGTG
GTGTATTACCAACCAAAAATTAATTTAAATGACAAATCGATTAAAGGTTTTGAAGCCCTCATTCGCTGGCAGCATCCTGA
AAAAGGGTTAGTTATGCCAAATATGTTCATTCCTTTTGCTGAACGTAGTAGCCTTATTTCCGATATTGGTAAAGTTGTTT
TAGATAAAGTTGGCAAACAGCTACAAGAATGGAAAAAAGCTGGCTATGCCGATGTCCGAGTTTCTGTAAATATTGTTGCT
CAACAAATTCATCGAGGTCTTTTACTCAGTGATTTAGACGAAGTTTTAGACACATATCATCTTGATGGTTCAAATTTAGA
ACTAGAAATCACGGAATCTGCTTTATTAGATAATACTGACAATGTAAAAAAACTATTGCACTCCATTAAAGAACGTAATA
TTTCAATTGCACTAGATGATTTTGGCACTGGATATTCATCGCTAGCTTATTTAACAGAATACCCAATCGATGTTTTAAAA
ATTGACCGGGCCTTTGTTTCGAAAATCGGTGATCAAAAACAAGAAGCAATTGTGAATGCGATGATTGCGATGGGTAAAAG
CATGGGATTAAAGCTAGTTGCAGAAGGTGTGGAAACCGAAGAACAAGTTATTTATCTACAAAAGCAGCAATGTGATTTTT
TACAAGGCTTTTTCTTTAGCCGTCCACTTCATCCAAATCAGATTCTTCAATATCTACAAACAAATACGCATATTTGA

Upstream 100 bases:

>100_bases
GACTTGTTCCATTTTAGATATTTGTTTAAGATAAGATATAACTCATTGAGATGTGTCATAGTATTCGTCGTTAGAAAACA
ATTATTATGACATTATTTCA

Downstream 100 bases:

>100_bases
TAATTGTTTTAACAGTCTATTTTACATGCGCTGGTTTTTCCAAAAATGAGCGTTTTTGACTGTGAGAAATAGAGAAGTAG
TGTTATATTCTTTAGCATTT

Product: sensory box protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 878; Mature: 877

Protein sequence:

>878_residues
MSYLFLSCTEHFIKKTDLVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRYFYL
LFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKISQLLFKNKQLVQVAEQHTQWAEELCVQLQQE
VNKSKDIEAQLQFNNHLLEQKVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEITFFDQQKQTQNTPL
HLKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKTNKALRMVGMTRDIHQEKKD
QEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSKSELLSQQLFNITINQKLQQQQFHDSITQQLLKTGEYMG
QFDEKFTSGKSVYLWLHINAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPSYS
FKNLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAIIYEISPIHPNIEQYCQNILQALN
APFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFV
VYYQPKINLNDKSIKGFEALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKAGYADVRVSVNIVA
QQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISIALDDFGTGYSSLAYLTEYPIDVLK
IDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEGVETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQTNTHI

Sequences:

>Translated_878_residues
MSYLFLSCTEHFIKKTDLVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRYFYL
LFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKISQLLFKNKQLVQVAEQHTQWAEELCVQLQQE
VNKSKDIEAQLQFNNHLLEQKVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEITFFDQQKQTQNTPL
HLKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKTNKALRMVGMTRDIHQEKKD
QEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSKSELLSQQLFNITINQKLQQQQFHDSITQQLLKTGEYMG
QFDEKFTSGKSVYLWLHINAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPSYS
FKNLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAIIYEISPIHPNIEQYCQNILQALN
APFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFV
VYYQPKINLNDKSIKGFEALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKAGYADVRVSVNIVA
QQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISIALDDFGTGYSSLAYLTEYPIDVLK
IDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEGVETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQTNTHI
>Mature_877_residues
SYLFLSCTEHFIKKTDLVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRYFYLL
FIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKISQLLFKNKQLVQVAEQHTQWAEELCVQLQQEV
NKSKDIEAQLQFNNHLLEQKVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEITFFDQQKQTQNTPLH
LKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKTNKALRMVGMTRDIHQEKKDQ
EHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSKSELLSQQLFNITINQKLQQQQFHDSITQQLLKTGEYMGQ
FDEKFTSGKSVYLWLHINAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPSYSF
KNLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAIIYEISPIHPNIEQYCQNILQALNA
PFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVV
YYQPKINLNDKSIKGFEALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKAGYADVRVSVNIVAQ
QIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISIALDDFGTGYSSLAYLTEYPIDVLKI
DRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEGVETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQTNTHI

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=584, Percent_Identity=29.2808219178082, Blast_Score=259, Evalue=7e-70,
Organism=Escherichia coli, GI87081921, Length=437, Percent_Identity=29.9771167048055, Blast_Score=216, Evalue=7e-57,
Organism=Escherichia coli, GI226510982, Length=449, Percent_Identity=27.6169265033408, Blast_Score=165, Evalue=1e-41,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=33.8709677419355, Blast_Score=164, Evalue=2e-41,
Organism=Escherichia coli, GI87081845, Length=252, Percent_Identity=34.1269841269841, Blast_Score=164, Evalue=2e-41,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=32.5301204819277, Blast_Score=155, Evalue=8e-39,
Organism=Escherichia coli, GI87081980, Length=241, Percent_Identity=34.4398340248963, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=31.9327731092437, Blast_Score=143, Evalue=6e-35,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=29.9180327868852, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1788381, Length=671, Percent_Identity=22.0566318926975, Blast_Score=117, Evalue=4e-27,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=25.4166666666667, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=27.2727272727273, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1788849, Length=235, Percent_Identity=27.2340425531915, Blast_Score=93, Evalue=7e-20,
Organism=Escherichia coli, GI1787410, Length=115, Percent_Identity=28.695652173913, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 102106; Mature: 101975

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYLFLSCTEHFIKKTDLVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFI
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHHHH
TSAHIIGLTFLTQQPRYFYLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAY
HHHHHHHHHHEECCCCEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ATQRNYQKISQLLFKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQ
HHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH
KVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEITFFDQQKQTQNTPL
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCH
HLKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPK
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEHHHHHHHHCCCCC
TNKALRMVGMTRDIHQEKKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGF
CCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCHHHHHCCC
SKSELLSQQLFNITINQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHINA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEH
VKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPSYS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCC
FKNLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAIIYE
CCCEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEE
ISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQALS
ECCCCCCHHHHHHHHHHHCCCCEEECCCCEEEEEECCEEECCCCCCCHHHHHHHHHHHHH
EAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGFEAL
HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHH
IRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKAGYADVRVSVNIVA
HHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
QQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISIALDD
HHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHCCCEEEEEC
FGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEGVETE
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCC
EQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQTNTHI
HHEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SYLFLSCTEHFIKKTDLVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFI
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHHHH
TSAHIIGLTFLTQQPRYFYLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAY
HHHHHHHHHHEECCCCEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ATQRNYQKISQLLFKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQ
HHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH
KVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEITFFDQQKQTQNTPL
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCH
HLKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPK
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEHHHHHHHHCCCCC
TNKALRMVGMTRDIHQEKKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGF
CCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCHHHHHCCC
SKSELLSQQLFNITINQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHINA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEH
VKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPSYS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCC
FKNLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAIIYE
CCCEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEE
ISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQALS
ECCCCCCHHHHHHHHHHHCCCCEEECCCCEEEEEECCEEECCCCCCCHHHHHHHHHHHHH
EAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGFEAL
HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHH
IRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKAGYADVRVSVNIVA
HHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
QQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISIALDD
HHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHCCCEEEEEC
FGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEGVETE
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCC
EQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQTNTHI
HHEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]