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The map label for this gene is radC [C]

Identifier: 213157928

GI number: 213157928

Start: 3531399

End: 3532106

Strand: Direct

Name: radC [C]

Synonym: AB57_3420

Alternate gene names: 213157928

Gene position: 3531399-3532106 (Clockwise)

Preceding gene: 213157926

Following gene: 213157929

Centisome position: 87.18

GC content: 40.54

Gene sequence:

>708_bases
ATGAATACTTCTATTAAAAATTGGCCAGAACAAGAACGGCCAAGAGAACGGTTATTACAACAAGGCCCTCAAAGTCTCTC
TGACTCTGAACTACTCGCGATCTTTCTTCGCTCAGGTTCACGTCAACATTCAGCAGTAGAGCTCGCACGTTTACTGATTC
AACAGTTTGGTAGTCTAAACGCTGTTTTCGATGCATCTTACAATGAATTAGCTCAATTTAATGGTATTGGAGCTACCAAG
TATTCCCAATTACTGGCCGTAAAAGAGCTTGGACGGCGTTATCTCGACTATCATTTTAGTCAGACTGAGCTAAGCCTTCA
TTCTTCTCATTTAGTTCTAGATTATTTGCGTTACGAATTAAAAGGTGAAAAACAAGAAGTCTTTGCGGTACTTTGCTTAG
ATGCCGAGTTGAGAAAACTACATTTTAAAAAGTTATTTTTTGGTTCAGTTCAACACTGCGCTGTTTCAGTGAATCAAACC
TTACGTTATGCCTTACAACAGCACGCTTGCCAATTAGTAATAGCACATAACCACCCATTTGGTTCCCCACAGCCCTCTCC
TGAAGATATTAAACTCACACAGCAACTTGAACAGGCCTGTCAGCTTGTTGAAATTCGCTTACTGGACCATTTTATTATCT
CGCCAGAAGGTAGCTTTTCATTTGCTGAACAACAACTGCTCAACCCTACCTCAATAGCCGTTCAATGA

Upstream 100 bases:

>100_bases
TTTCTGTTGCAGTGGCGCTCACAATAGCATTAAATACGCGCAGACCCAAGATTGATTGGGCAAACAAAATAAATTTTTAA
GCAGAATATTGCTGGGGAAT

Downstream 100 bases:

>100_bases
TATTGACAAAGCTTCACTAAGCTTAGAATATCAAAACAAAAATAGCGACGTTTAAAATAAAATGATTGTTCGTGAACAGC
CCAGTATTTTTAAAGTTTTA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNTSIKNWPEQERPRERLLQQGPQSLSDSELLAIFLRSGSRQHSAVELARLLIQQFGSLNAVFDASYNELAQFNGIGATK
YSQLLAVKELGRRYLDYHFSQTELSLHSSHLVLDYLRYELKGEKQEVFAVLCLDAELRKLHFKKLFFGSVQHCAVSVNQT
LRYALQQHACQLVIAHNHPFGSPQPSPEDIKLTQQLEQACQLVEIRLLDHFIISPEGSFSFAEQQLLNPTSIAVQ

Sequences:

>Translated_235_residues
MNTSIKNWPEQERPRERLLQQGPQSLSDSELLAIFLRSGSRQHSAVELARLLIQQFGSLNAVFDASYNELAQFNGIGATK
YSQLLAVKELGRRYLDYHFSQTELSLHSSHLVLDYLRYELKGEKQEVFAVLCLDAELRKLHFKKLFFGSVQHCAVSVNQT
LRYALQQHACQLVIAHNHPFGSPQPSPEDIKLTQQLEQACQLVEIRLLDHFIISPEGSFSFAEQQLLNPTSIAVQ
>Mature_235_residues
MNTSIKNWPEQERPRERLLQQGPQSLSDSELLAIFLRSGSRQHSAVELARLLIQQFGSLNAVFDASYNELAQFNGIGATK
YSQLLAVKELGRRYLDYHFSQTELSLHSSHLVLDYLRYELKGEKQEVFAVLCLDAELRKLHFKKLFFGSVQHCAVSVNQT
LRYALQQHACQLVIAHNHPFGSPQPSPEDIKLTQQLEQACQLVEIRLLDHFIISPEGSFSFAEQQLLNPTSIAVQ

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=220, Percent_Identity=35.9090909090909, Blast_Score=162, Evalue=1e-41,
Organism=Escherichia coli, GI2367100, Length=135, Percent_Identity=37.037037037037, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1788997, Length=133, Percent_Identity=36.0902255639098, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1788312, Length=135, Percent_Identity=34.0740740740741, Blast_Score=85, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2918_ACIBT (A3M8S9)

Other databases:

- EMBL:   CP000521
- RefSeq:   YP_001085925.1
- ProteinModelPortal:   A3M8S9
- SMR:   A3M8S9
- STRING:   A3M8S9
- GeneID:   4917316
- GenomeReviews:   CP000521_GR
- KEGG:   acb:A1S_2918
- NMPDR:   fig|400667.4.peg.3019
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- ProtClustDB:   CLSK707775
- InterPro:   IPR010994
- InterPro:   IPR001405
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 26762; Mature: 26762

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSIKNWPEQERPRERLLQQGPQSLSDSELLAIFLRSGSRQHSAVELARLLIQQFGSLN
CCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
AVFDASYNELAQFNGIGATKYSQLLAVKELGRRYLDYHFSQTELSLHSSHLVLDYLRYEL
EEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
KGEKQEVFAVLCLDAELRKLHFKKLFFGSVQHCAVSVNQTLRYALQQHACQLVIAHNHPF
CCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
GSPQPSPEDIKLTQQLEQACQLVEIRLLDHFIISPEGSFSFAEQQLLNPTSIAVQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHEEEC
>Mature Secondary Structure
MNTSIKNWPEQERPRERLLQQGPQSLSDSELLAIFLRSGSRQHSAVELARLLIQQFGSLN
CCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
AVFDASYNELAQFNGIGATKYSQLLAVKELGRRYLDYHFSQTELSLHSSHLVLDYLRYEL
EEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
KGEKQEVFAVLCLDAELRKLHFKKLFFGSVQHCAVSVNQTLRYALQQHACQLVIAHNHPF
CCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
GSPQPSPEDIKLTQQLEQACQLVEIRLLDHFIISPEGSFSFAEQQLLNPTSIAVQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA