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The map label for this gene is ylbK [H]

Identifier: 213157810

GI number: 213157810

Start: 3392640

End: 3393611

Strand: Reverse

Name: ylbK [H]

Synonym: AB57_3293

Alternate gene names: 213157810

Gene position: 3393611-3392640 (Counterclockwise)

Preceding gene: 213157811

Following gene: 213157809

Centisome position: 83.78

GC content: 41.56

Gene sequence:

>972_bases
ATGAAACAGCTTAAATTGTGGGTTCTCGGACTTTCTATGGTGTTGGCCGGGTGCCAAACCACCTCACACTTATCTGCCTT
AAAACCGCAAACGGCAGAGGCATACTCACGTTTCGTCGATCAGCCTTTTGCACAGCTTAAGAAGCAGCATAAGAAACCAG
TAGTCGCATTAGTACTAGGTAGTGGTGGTGCACGAGGATATGCACATATTGGTGTTATTGAAGTTTTAGAACAGCATGGT
ATTCGTCCTGATTTCATTGTTGGAACCAGTGCAGGAAGTATTGTCGGAGCAATTTATGCGAGTGGAAAAACGCCTGATGA
ACTGCGCGATACTGCATTGAAAATGAAAGCGGCTGATGTTCGTGACATCAGTATTGGTTTAAAAGGTTTCTTTGACGGCA
AAAAAGTTGAAGACTACGTAAATCAGCAAGTAAATAACTTGCCGCTCGAAAAAATGAAAATTCCGATGTATGTGGTGGCA
ACAGAGCTAAAGCATGGTACCAAAACCGTATTTAATTATGGCAATACGGGGCAAGCCGTGAGAGCATCAGCCTCAATACC
AAGCATGTTTGTACCGACTAAAATTGGTAAATCTGAATATGTAGATGGCGGTTTAGTCAGTCCGGTACCTGTTGAAGTAG
CCCGTGATTTAGGAGCCGATGTCATTATTGCTGTCGATATTCTGGCTCAACCCATTTATACGGAAACCTCAAATGTATGG
GGACTCTTTAACCAGAATATTAATATTATGCAAGGACGTTTGGCTGCCGAAGAACTTCAATATGCAGATGTAGTAATTCA
ACCGGATTTAAGAGAAAAAGCACATATTTTTGATGTAAAAGGCCGTGAAGCAACCATGAAGGCTGGTATAGATGCAGCAA
ATGCAAAACTGTCTGATATTCAGTTTGCGATTGATGAAAAAATAGCTGAACAGAATCTATCTACTGACGGTTTAAGTGCG
CAAACACAATAA

Upstream 100 bases:

>100_bases
AATTAAACATGACAAATTAAATAAATTCACTACAGCATTTCACAAAACGAGCAACTAAAATTGCAATTCGAAAATTAACG
TCATAGTGCAAAGATGGGCC

Downstream 100 bases:

>100_bases
ATTGAAAGCAAGTATATGAAAAATTAAGTAAAAGCCCGCTAAGGGCTTTTTTGTTGAAAAATAAAAGATTTGTATGTGCT
GACAAAAATTTTTGTATAGT

Product: phospholipase, patatin family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MKQLKLWVLGLSMVLAGCQTTSHLSALKPQTAEAYSRFVDQPFAQLKKQHKKPVVALVLGSGGARGYAHIGVIEVLEQHG
IRPDFIVGTSAGSIVGAIYASGKTPDELRDTALKMKAADVRDISIGLKGFFDGKKVEDYVNQQVNNLPLEKMKIPMYVVA
TELKHGTKTVFNYGNTGQAVRASASIPSMFVPTKIGKSEYVDGGLVSPVPVEVARDLGADVIIAVDILAQPIYTETSNVW
GLFNQNINIMQGRLAAEELQYADVVIQPDLREKAHIFDVKGREATMKAGIDAANAKLSDIQFAIDEKIAEQNLSTDGLSA
QTQ

Sequences:

>Translated_323_residues
MKQLKLWVLGLSMVLAGCQTTSHLSALKPQTAEAYSRFVDQPFAQLKKQHKKPVVALVLGSGGARGYAHIGVIEVLEQHG
IRPDFIVGTSAGSIVGAIYASGKTPDELRDTALKMKAADVRDISIGLKGFFDGKKVEDYVNQQVNNLPLEKMKIPMYVVA
TELKHGTKTVFNYGNTGQAVRASASIPSMFVPTKIGKSEYVDGGLVSPVPVEVARDLGADVIIAVDILAQPIYTETSNVW
GLFNQNINIMQGRLAAEELQYADVVIQPDLREKAHIFDVKGREATMKAGIDAANAKLSDIQFAIDEKIAEQNLSTDGLSA
QTQ
>Mature_323_residues
MKQLKLWVLGLSMVLAGCQTTSHLSALKPQTAEAYSRFVDQPFAQLKKQHKKPVVALVLGSGGARGYAHIGVIEVLEQHG
IRPDFIVGTSAGSIVGAIYASGKTPDELRDTALKMKAADVRDISIGLKGFFDGKKVEDYVNQQVNNLPLEKMKIPMYVVA
TELKHGTKTVFNYGNTGQAVRASASIPSMFVPTKIGKSEYVDGGLVSPVPVEVARDLGADVIIAVDILAQPIYTETSNVW
GLFNQNINIMQGRLAAEELQYADVVIQPDLREKAHIFDVKGREATMKAGIDAANAKLSDIQFAIDEKIAEQNLSTDGLSA
QTQ

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=255, Percent_Identity=29.0196078431373, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI116256487, Length=255, Percent_Identity=29.0196078431373, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI260656039, Length=255, Percent_Identity=29.0196078431373, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI260656043, Length=255, Percent_Identity=29.0196078431373, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI260656037, Length=253, Percent_Identity=29.2490118577075, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI148727335, Length=215, Percent_Identity=30.6976744186047, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI148727290, Length=215, Percent_Identity=30.6976744186047, Blast_Score=100, Evalue=3e-21,
Organism=Escherichia coli, GI226510936, Length=180, Percent_Identity=37.2222222222222, Blast_Score=117, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI193204778, Length=272, Percent_Identity=24.6323529411765, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71997289, Length=169, Percent_Identity=27.2189349112426, Blast_Score=64, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71997299, Length=169, Percent_Identity=27.2189349112426, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323581, Length=257, Percent_Identity=26.8482490272374, Blast_Score=88, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28571388, Length=212, Percent_Identity=27.8301886792453, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281376913, Length=212, Percent_Identity=27.8301886792453, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 34924; Mature: 34924

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLKLWVLGLSMVLAGCQTTSHLSALKPQTAEAYSRFVDQPFAQLKKQHKKPVVALVLG
CCCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCEEEEEEC
SGGARGYAHIGVIEVLEQHGIRPDFIVGTSAGSIVGAIYASGKTPDELRDTALKMKAADV
CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC
RDISIGLKGFFDGKKVEDYVNQQVNNLPLEKMKIPMYVVATELKHGTKTVFNYGNTGQAV
EEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCEEEEEEHHCCCCHHEEECCCCCCEE
RASASIPSMFVPTKIGKSEYVDGGLVSPVPVEVARDLGADVIIAVDILAQPIYTETSNVW
EECCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEHHHCCCCCCCCCEE
GLFNQNINIMQGRLAAEELQYADVVIQPDLREKAHIFDVKGREATMKAGIDAANAKLSDI
EEECCCCEEHHHHHHHHHHHHHCEEECCCCCCCCEEEECCCCCHHHHCCCCCCCCCHHHH
QFAIDEKIAEQNLSTDGLSAQTQ
HHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKQLKLWVLGLSMVLAGCQTTSHLSALKPQTAEAYSRFVDQPFAQLKKQHKKPVVALVLG
CCCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCEEEEEEC
SGGARGYAHIGVIEVLEQHGIRPDFIVGTSAGSIVGAIYASGKTPDELRDTALKMKAADV
CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC
RDISIGLKGFFDGKKVEDYVNQQVNNLPLEKMKIPMYVVATELKHGTKTVFNYGNTGQAV
EEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCEEEEEEHHCCCCHHEEECCCCCCEE
RASASIPSMFVPTKIGKSEYVDGGLVSPVPVEVARDLGADVIIAVDILAQPIYTETSNVW
EECCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEHHHCCCCCCCCCEE
GLFNQNINIMQGRLAAEELQYADVVIQPDLREKAHIFDVKGREATMKAGIDAANAKLSDI
EEECCCCEEHHHHHHHHHHHHHCEEECCCCCCCCEEEECCCCCHHHHCCCCCCCCCHHHH
QFAIDEKIAEQNLSTDGLSAQTQ
HHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]