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The map label for this gene is intB [H]

Identifier: 213157708

GI number: 213157708

Start: 3312021

End: 3313265

Strand: Direct

Name: intB [H]

Synonym: AB57_3187

Alternate gene names: 213157708

Gene position: 3312021-3313265 (Clockwise)

Preceding gene: 213157706

Following gene: 213157709

Centisome position: 81.77

GC content: 36.31

Gene sequence:

>1245_bases
ATGCCTAAAACCGTTGTCCCACTTACTGATACAAAGATAAAGAAAGCAAAATCAGAAAATGGAAAATCCCTGAAACTATC
TGACGGTTCGGGTCTCTATTTGCTTATAGATAAAAACCAAAATAAATTTTGGCGTTTTGATTACTCACGCCCATATACAA
AAAAAAGAAATACTATTGGTTTTGGTTCTTACCCAGAAGTAAGTCTTGCAGATGCACGATCTAAACGGGATGAAGCTAGA
ACTTTACTGGCTCAGAATATTGACCCACAAGTTGAACGTAAAAGAGTTGAACAAGAACATATAAACTCAGAGAAAAATAC
TTTTGCTGCTGTTGCTGCAGAATGGGAATCCAAACAAGATTTTGCTGAGTCAACTATCCGTGGTCATAAAAGATTACTTC
AAGTCATAAATTCCAATATTGGAAAAAAACCTATTGATAAAGTTACCCCAGTAGAAGTTTTAAATATCTGCCGCATTTAT
GAGAAACAAGGAAAATTAGAGACAGCAAAAAAAGTTAAAGTGAAATGCGGACAAATCATGAGATATGGCGTTGCCACTGG
TAGGTGTGAGAGAGACGTAACTCAAGATTTAAGAGGTGCCTTAAAAACACCTAAAGTAAAACATTTATCAGCTTTGACTG
AATCGAATGAATTTGCTGAACTACTTTATGACATCGATTTTTATGAAGGCACATTCATTACCCAAATGGCCTTAAAAATT
GCTCCTTATGTATTTGTTCGTCCTGGTGAGCTGCGTTATGCAAAGTGGCCAGATATTGACTTAGAAATTGATCTTTGGAG
ATATACGCCACCAAAAACAAAAAATAAAACTGGCGTACAACACCTTGTGCCTATTCCTAGACAAGTTAAAGTACTGTTGC
TGAAAATAAAAGAACTGACTTATGATCCCGATGGGGAAAGTGAGTATGTATTCCCTTCTATGACTAGCAAACTTAAACCA
ATGTCAGAAAATACAATTAACCAAGCATTACGTAGATTGGGCTATACATCTGAACAAGTTTGCGGGCATGGCTTCCGTGC
TTCTGCAAGAACAATATTAGAGGAAGTACTTAACTACCCTATTGAAATTATTGAGCAGCAATTAGCTCACAAAGTTAAAG
ATATGCATGGTCGAGCATACAACCGGACAAAACATTTAGAGAAAAGAAGAGAGATGATGCAAAGCTGGGCAGATTATTGT
GATCAAATAAAAGCAGATTATGCCAAGACTTTACCAACTAGATAA

Upstream 100 bases:

>100_bases
TATAGTCTTTAATAGTCCGACATAGACCGAGATAATTCTTGTTTTTTTACGGTACTTAATACAGTACCTCATTAAATACC
GCAAAAATGGTACCGCAAAA

Downstream 100 bases:

>100_bases
GTGATTGTATATTAGTGAATTGCCACCAAGTCTTATTAAAGTAAACTTCATTATTTAAAAAGTTAATTTTTAGCTCGTTT
CCATTGTGGTCATAAATCTT

Product: site-specific recombinase, phage integrase family

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MPKTVVPLTDTKIKKAKSENGKSLKLSDGSGLYLLIDKNQNKFWRFDYSRPYTKKRNTIGFGSYPEVSLADARSKRDEAR
TLLAQNIDPQVERKRVEQEHINSEKNTFAAVAAEWESKQDFAESTIRGHKRLLQVINSNIGKKPIDKVTPVEVLNICRIY
EKQGKLETAKKVKVKCGQIMRYGVATGRCERDVTQDLRGALKTPKVKHLSALTESNEFAELLYDIDFYEGTFITQMALKI
APYVFVRPGELRYAKWPDIDLEIDLWRYTPPKTKNKTGVQHLVPIPRQVKVLLLKIKELTYDPDGESEYVFPSMTSKLKP
MSENTINQALRRLGYTSEQVCGHGFRASARTILEEVLNYPIEIIEQQLAHKVKDMHGRAYNRTKHLEKRREMMQSWADYC
DQIKADYAKTLPTR

Sequences:

>Translated_414_residues
MPKTVVPLTDTKIKKAKSENGKSLKLSDGSGLYLLIDKNQNKFWRFDYSRPYTKKRNTIGFGSYPEVSLADARSKRDEAR
TLLAQNIDPQVERKRVEQEHINSEKNTFAAVAAEWESKQDFAESTIRGHKRLLQVINSNIGKKPIDKVTPVEVLNICRIY
EKQGKLETAKKVKVKCGQIMRYGVATGRCERDVTQDLRGALKTPKVKHLSALTESNEFAELLYDIDFYEGTFITQMALKI
APYVFVRPGELRYAKWPDIDLEIDLWRYTPPKTKNKTGVQHLVPIPRQVKVLLLKIKELTYDPDGESEYVFPSMTSKLKP
MSENTINQALRRLGYTSEQVCGHGFRASARTILEEVLNYPIEIIEQQLAHKVKDMHGRAYNRTKHLEKRREMMQSWADYC
DQIKADYAKTLPTR
>Mature_413_residues
PKTVVPLTDTKIKKAKSENGKSLKLSDGSGLYLLIDKNQNKFWRFDYSRPYTKKRNTIGFGSYPEVSLADARSKRDEART
LLAQNIDPQVERKRVEQEHINSEKNTFAAVAAEWESKQDFAESTIRGHKRLLQVINSNIGKKPIDKVTPVEVLNICRIYE
KQGKLETAKKVKVKCGQIMRYGVATGRCERDVTQDLRGALKTPKVKHLSALTESNEFAELLYDIDFYEGTFITQMALKIA
PYVFVRPGELRYAKWPDIDLEIDLWRYTPPKTKNKTGVQHLVPIPRQVKVLLLKIKELTYDPDGESEYVFPSMTSKLKPM
SENTINQALRRLGYTSEQVCGHGFRASARTILEEVLNYPIEIIEQQLAHKVKDMHGRAYNRTKHLEKRREMMQSWADYCD
QIKADYAKTLPTR

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=406, Percent_Identity=32.7586206896552, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1788690, Length=400, Percent_Identity=31, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI145693166, Length=419, Percent_Identity=32.9355608591885, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47718; Mature: 47587

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKTVVPLTDTKIKKAKSENGKSLKLSDGSGLYLLIDKNQNKFWRFDYSRPYTKKRNTIG
CCCCEECCCCHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCC
FGSYPEVSLADARSKRDEARTLLAQNIDPQVERKRVEQEHINSEKNTFAAVAAEWESKQD
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FAESTIRGHKRLLQVINSNIGKKPIDKVTPVEVLNICRIYEKQGKLETAKKVKVKCGQIM
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RYGVATGRCERDVTQDLRGALKTPKVKHLSALTESNEFAELLYDIDFYEGTFITQMALKI
HHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHH
APYVFVRPGELRYAKWPDIDLEIDLWRYTPPKTKNKTGVQHLVPIPRQVKVLLLKIKELT
CCEEEECCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHC
YDPDGESEYVFPSMTSKLKPMSENTINQALRRLGYTSEQVCGHGFRASARTILEEVLNYP
CCCCCCCCEECCCHHHHCCCCCHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHCC
IEIIEQQLAHKVKDMHGRAYNRTKHLEKRREMMQSWADYCDQIKADYAKTLPTR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PKTVVPLTDTKIKKAKSENGKSLKLSDGSGLYLLIDKNQNKFWRFDYSRPYTKKRNTIG
CCCEECCCCHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCC
FGSYPEVSLADARSKRDEARTLLAQNIDPQVERKRVEQEHINSEKNTFAAVAAEWESKQD
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FAESTIRGHKRLLQVINSNIGKKPIDKVTPVEVLNICRIYEKQGKLETAKKVKVKCGQIM
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RYGVATGRCERDVTQDLRGALKTPKVKHLSALTESNEFAELLYDIDFYEGTFITQMALKI
HHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHH
APYVFVRPGELRYAKWPDIDLEIDLWRYTPPKTKNKTGVQHLVPIPRQVKVLLLKIKELT
CCEEEECCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHC
YDPDGESEYVFPSMTSKLKPMSENTINQALRRLGYTSEQVCGHGFRASARTILEEVLNYP
CCCCCCCCEECCCHHHHCCCCCHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHCC
IEIIEQQLAHKVKDMHGRAYNRTKHLEKRREMMQSWADYCDQIKADYAKTLPTR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]