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The map label for this gene is cydB [H]

Identifier: 213157571

GI number: 213157571

Start: 2350745

End: 2351890

Strand: Direct

Name: cydB [H]

Synonym: AB57_2263

Alternate gene names: 213157571

Gene position: 2350745-2351890 (Clockwise)

Preceding gene: 213157570

Following gene: 213157572

Centisome position: 58.04

GC content: 42.93

Gene sequence:

>1146_bases
ATGATTGAATATGAACTCCTAAAAATCATATGGTGGGTGTTAGTTGGAGTCCTACTCATTGGATTTGCCCTAACCGATGG
TTTCGATATGGGCTCAATGGCACTCATGCCTTTTGTTGGTAAAACTGATAACGAACGCCGTGCTGCTATTAATACGATCG
CACCCCATTGGGATGGTAATCAGGTCTGGTTTATCACTGCTGGTGGCGCGCTATTTGCAGCTTGGCCAATGGTATACTCA
GTCGCATTTTCCGGAATGTATTGGGCCTTATTACTTGTGCTATTTGCCCTCTTCTTACGTCCTGTAGGTTTTGACTATCG
TTCTAAACTTGAAAATACCCAATGGCGCAACTCTTGGGACTGGGGACTTTGTATTGGTGGTGCCGTACCAGCGCTTGTTT
TTGGTGTTGCCTTTGGTAATTTATTCTTAGGTATTCCTTTTAGTTTAGACAGTACATTACGCTCGGAATATTCAGGTAGC
TTCTTTGCTCTTCTTAACCCATTTGCTTTAATTTGCGGTATTGTCAGCCTTTCTATGTTGTGTGCTCATGGCGGCGCTTG
GCTTATGCTACGCACAGACGGTGCCTTGAAACAACGCTCTGCTAAAGCAACTCAAATTATGGCAGCCATATTTTTAGTTT
GTTTCCTTGTAATTGGGGCATGGTTGTACTTCGGTCAAGTCCCTGGTTATAGCTATGCTGCTGCAGTTGATCCAAACGCA
GCACTTAACCCTTTAGCCAAAGAAGTAGTCACAAACAACAACCCAGGCTGGATGAATAACTACAGCAGCTATCCGATTAC
AAAAGTAGCTCCTGTACTGGCAATTTTAGGGGCAATTATTGCCTTCTTTACAGCATCAAAAGCCAAAGCGGGTTTAAGTT
TTGCTGGCACAAGCTTAATGATTGTAGGTGCGATTTTAACTGCCGGTTTTGCACTCTTCCCATTTTTATTGCCATCGAGT
GTTAATCCAAACTCTAGCTTAACAATGTGGGATGCCGTATCAAGCCATCGTACTTTAGGGGTTATGACTGTTGCTGCATG
CATATTCGTTCCGATCATTTTGATCTACACCAGTTGGTCATATTACAAAATGTGGGGCGTTATTACTAATAAACATATCG
AGTCAAACTCGCATAGCCTGTACTAA

Upstream 100 bases:

>100_bases
TGATTAAGTTTGCTCGCTTAGGTCCAAGCTCACTTCACACTGGTAAATACCATTTTGAAAAACAAGAGCCAAAAACAGCT
GTTAATGGGGAGGCTTTATC

Downstream 100 bases:

>100_bases
TAAGGAGAAGCAAATGTGGTATTTCGCATGGATTCTTGGAATTTTGATGGCATGTTTCGCGGGTGTATTGAGCGCTCTTT
ATATCGAACATCATCAAAAT

Product: cytochrome D ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMALMPFVGKTDNERRAAINTIAPHWDGNQVWFITAGGALFAAWPMVYS
VAFSGMYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWDWGLCIGGAVPALVFGVAFGNLFLGIPFSLDSTLRSEYSGS
FFALLNPFALICGIVSLSMLCAHGGAWLMLRTDGALKQRSAKATQIMAAIFLVCFLVIGAWLYFGQVPGYSYAAAVDPNA
ALNPLAKEVVTNNNPGWMNNYSSYPITKVAPVLAILGAIIAFFTASKAKAGLSFAGTSLMIVGAILTAGFALFPFLLPSS
VNPNSSLTMWDAVSSHRTLGVMTVAACIFVPIILIYTSWSYYKMWGVITNKHIESNSHSLY

Sequences:

>Translated_381_residues
MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMALMPFVGKTDNERRAAINTIAPHWDGNQVWFITAGGALFAAWPMVYS
VAFSGMYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWDWGLCIGGAVPALVFGVAFGNLFLGIPFSLDSTLRSEYSGS
FFALLNPFALICGIVSLSMLCAHGGAWLMLRTDGALKQRSAKATQIMAAIFLVCFLVIGAWLYFGQVPGYSYAAAVDPNA
ALNPLAKEVVTNNNPGWMNNYSSYPITKVAPVLAILGAIIAFFTASKAKAGLSFAGTSLMIVGAILTAGFALFPFLLPSS
VNPNSSLTMWDAVSSHRTLGVMTVAACIFVPIILIYTSWSYYKMWGVITNKHIESNSHSLY
>Mature_381_residues
MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMALMPFVGKTDNERRAAINTIAPHWDGNQVWFITAGGALFAAWPMVYS
VAFSGMYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWDWGLCIGGAVPALVFGVAFGNLFLGIPFSLDSTLRSEYSGS
FFALLNPFALICGIVSLSMLCAHGGAWLMLRTDGALKQRSAKATQIMAAIFLVCFLVIGAWLYFGQVPGYSYAAAVDPNA
ALNPLAKEVVTNNNPGWMNNYSSYPITKVAPVLAILGAIIAFFTASKAKAGLSFAGTSLMIVGAILTAGFALFPFLLPSS
VNPNSSLTMWDAVSSHRTLGVMTVAACIFVPIILIYTSWSYYKMWGVITNKHIESNSHSLY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=381, Percent_Identity=55.9055118110236, Blast_Score=429, Evalue=1e-121,
Organism=Escherichia coli, GI1787213, Length=382, Percent_Identity=50, Blast_Score=385, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41556; Mature: 41556

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMALMPFVGKTDNERRAAINTIAPHWDGN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCC
QVWFITAGGALFAAWPMVYSVAFSGMYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCC
WGLCIGGAVPALVFGVAFGNLFLGIPFSLDSTLRSEYSGSFFALLNPFALICGIVSLSML
CCEEEHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
CAHGGAWLMLRTDGALKQRSAKATQIMAAIFLVCFLVIGAWLYFGQVPGYSYAAAVDPNA
HHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
ALNPLAKEVVTNNNPGWMNNYSSYPITKVAPVLAILGAIIAFFTASKAKAGLSFAGTSLM
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHH
IVGAILTAGFALFPFLLPSSVNPNSSLTMWDAVSSHRTLGVMTVAACIFVPIILIYTSWS
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
YYKMWGVITNKHIESNSHSLY
HHHHHHHHHCCEECCCCCCCC
>Mature Secondary Structure
MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMALMPFVGKTDNERRAAINTIAPHWDGN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCC
QVWFITAGGALFAAWPMVYSVAFSGMYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCC
WGLCIGGAVPALVFGVAFGNLFLGIPFSLDSTLRSEYSGSFFALLNPFALICGIVSLSML
CCEEEHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
CAHGGAWLMLRTDGALKQRSAKATQIMAAIFLVCFLVIGAWLYFGQVPGYSYAAAVDPNA
HHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
ALNPLAKEVVTNNNPGWMNNYSSYPITKVAPVLAILGAIIAFFTASKAKAGLSFAGTSLM
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHH
IVGAILTAGFALFPFLLPSSVNPNSSLTMWDAVSSHRTLGVMTVAACIFVPIILIYTSWS
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
YYKMWGVITNKHIESNSHSLY
HHHHHHHHHCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]