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The map label for this gene is cydA [H]

Identifier: 213157570

GI number: 213157570

Start: 2349162

End: 2350748

Strand: Direct

Name: cydA [H]

Synonym: AB57_2262

Alternate gene names: 213157570

Gene position: 2349162-2350748 (Clockwise)

Preceding gene: 213157569

Following gene: 213157571

Centisome position: 58.0

GC content: 41.9

Gene sequence:

>1587_bases
ATGATTTCTGAAAGCGTGGTTGATCTTTCGCGGTTCCAATTTGCCATGACCGCAATGTATCACTTTCTTTTCGTACCTTT
GACCCTAGGCCTTGCGTTTATTCTGGCTATTATGGAAACCACTTACGTTATATCTGGTAAAGAGATTTACAAGGATATGA
CTAAGTTTTGGGGAAAACTATTTGGTATTAACTTTGCCTTAGGCGTAACTACAGGCTTAACCATGGAGTTCCAGTTCGGA
ACAAACTGGGCATATTACTCTCATTATGTAGGTGATATATTCGGTGCGCCATTAGCAATTGAAGGCTTAATGGCATTCTT
CCTTGAGTCTACATTTATCGGTCTATTCTTTTTTGGATGGGACCGCTTAAGTAAAGTTCAACATCTAGGAGTAACTTGGT
TAGTTGCCCTAGGTTCTAACATGTCAGCGCTCTGGATTTTAGTTGCGAATGGCTGGATGCAAAACCCTGTAGGTGCAGCA
TTTAACTTCGAAACTATGCGTATGGAGCTTGTTGATTTCGGCGCACTTATTTTCAACCCGGTTGCACAGGTTAAATTTGT
ACATACTGTTTCTGCCGGATATGTAACAGGTGCGATTTTCGTACTCGCCATTTCAAGCTACTATCTACTCAAAAAACGTG
ACCTTCCTTTCGCACGTCGTTCATTTGCAATTGCTGCCATTTTTGGCCTTGCTTCTACACTTTCAGTAATTTTACTCGGT
GACGAGTCGGGTTATGAGCTAGGTGATGTTCAAAAAACTAAACTCGCTGCAATTGAAGCCGAATGGGATACTCACCCTGC
TCCTGCACCGTTTACTTTGTTTGGTGTACCAAACCATGAAGAAATGCGAACAGATTATGCAGTTAAAATTCCATACGCAT
TAGGCCTCATCGCCACTCGTTCAACTACGAAAGAAGTCACGGGTTTGAAAGACTTGATGCAACAGCACGAAGTTCGTATT
CGTAACGGTATGCTTGCTTATGCTGAGCTTGAAAAATTACGTGCTGGTGATCGTTCACCAGAGTTATTAGCTTCATTTGA
GAAAAATCAAAAAGACTTAGGCTATGGTCTACTTCTTAAAAAATATGCTCCGAATGTAGTCGATGCAAGCGAGCAGCACA
TTCAAGCAGCGGTAAAAGATACTATTCCGAATGTTACAGCTCTGTTTTTCTCTTTCCGTGCAATGGTTGCTTCTGGCTTC
TTAATGCTACTTCTTTTCATTTTAGCGACTTGGGCAGTAGCGAAAAGAAATGCTGAGAATAAACCTTGGCTACTTAAATA
TGCATTATTTGCCCTACCACTTCCGTGGATTGCTGCACAAACCGGTTGGTATGTAGCAGAGGGCGGCCGTCAGCCGTGGT
CTATTGGTGAAATTTTACCTACGCACTTATCAGCTTCAAGTTTAAGTACGGGCGATGTGTGGGGCTCAATTCTCGCCCTG
GCAGCGTTCTATACCATACTTTTGATTATTGAAATGTACTTAATGATTAAGTTTGCTCGCTTAGGTCCAAGCTCACTTCA
CACTGGTAAATACCATTTTGAAAAACAAGAGCCAAAAACAGCTGTTAATGGGGAGGCTTTATCATGA

Upstream 100 bases:

>100_bases
ATATTTGGTTTGACGCTCCCACTATCCCCAAAAATTTTGACAATCAGGTCGCCGAGCATATTGCAGGCGATAACTCTTCC
CACATTAAGGAGACACGTTG

Downstream 100 bases:

>100_bases
TTGAATATGAACTCCTAAAAATCATATGGTGGGTGTTAGTTGGAGTCCTACTCATTGGATTTGCCCTAACCGATGGTTTC
GATATGGGCTCAATGGCACT

Product: cytochrome D ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MISESVVDLSRFQFAMTAMYHFLFVPLTLGLAFILAIMETTYVISGKEIYKDMTKFWGKLFGINFALGVTTGLTMEFQFG
TNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGWDRLSKVQHLGVTWLVALGSNMSALWILVANGWMQNPVGAA
FNFETMRMELVDFGALIFNPVAQVKFVHTVSAGYVTGAIFVLAISSYYLLKKRDLPFARRSFAIAAIFGLASTLSVILLG
DESGYELGDVQKTKLAAIEAEWDTHPAPAPFTLFGVPNHEEMRTDYAVKIPYALGLIATRSTTKEVTGLKDLMQQHEVRI
RNGMLAYAELEKLRAGDRSPELLASFEKNQKDLGYGLLLKKYAPNVVDASEQHIQAAVKDTIPNVTALFFSFRAMVASGF
LMLLLFILATWAVAKRNAENKPWLLKYALFALPLPWIAAQTGWYVAEGGRQPWSIGEILPTHLSASSLSTGDVWGSILAL
AAFYTILLIIEMYLMIKFARLGPSSLHTGKYHFEKQEPKTAVNGEALS

Sequences:

>Translated_528_residues
MISESVVDLSRFQFAMTAMYHFLFVPLTLGLAFILAIMETTYVISGKEIYKDMTKFWGKLFGINFALGVTTGLTMEFQFG
TNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGWDRLSKVQHLGVTWLVALGSNMSALWILVANGWMQNPVGAA
FNFETMRMELVDFGALIFNPVAQVKFVHTVSAGYVTGAIFVLAISSYYLLKKRDLPFARRSFAIAAIFGLASTLSVILLG
DESGYELGDVQKTKLAAIEAEWDTHPAPAPFTLFGVPNHEEMRTDYAVKIPYALGLIATRSTTKEVTGLKDLMQQHEVRI
RNGMLAYAELEKLRAGDRSPELLASFEKNQKDLGYGLLLKKYAPNVVDASEQHIQAAVKDTIPNVTALFFSFRAMVASGF
LMLLLFILATWAVAKRNAENKPWLLKYALFALPLPWIAAQTGWYVAEGGRQPWSIGEILPTHLSASSLSTGDVWGSILAL
AAFYTILLIIEMYLMIKFARLGPSSLHTGKYHFEKQEPKTAVNGEALS
>Mature_528_residues
MISESVVDLSRFQFAMTAMYHFLFVPLTLGLAFILAIMETTYVISGKEIYKDMTKFWGKLFGINFALGVTTGLTMEFQFG
TNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGWDRLSKVQHLGVTWLVALGSNMSALWILVANGWMQNPVGAA
FNFETMRMELVDFGALIFNPVAQVKFVHTVSAGYVTGAIFVLAISSYYLLKKRDLPFARRSFAIAAIFGLASTLSVILLG
DESGYELGDVQKTKLAAIEAEWDTHPAPAPFTLFGVPNHEEMRTDYAVKIPYALGLIATRSTTKEVTGLKDLMQQHEVRI
RNGMLAYAELEKLRAGDRSPELLASFEKNQKDLGYGLLLKKYAPNVVDASEQHIQAAVKDTIPNVTALFFSFRAMVASGF
LMLLLFILATWAVAKRNAENKPWLLKYALFALPLPWIAAQTGWYVAEGGRQPWSIGEILPTHLSASSLSTGDVWGSILAL
AAFYTILLIIEMYLMIKFARLGPSSLHTGKYHFEKQEPKTAVNGEALS

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=516, Percent_Identity=69.1860465116279, Blast_Score=765, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=57.1428571428571, Blast_Score=599, Evalue=1e-172,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58673; Mature: 58673

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISESVVDLSRFQFAMTAMYHFLFVPLTLGLAFILAIMETTYVISGKEIYKDMTKFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHH
FGINFALGVTTGLTMEFQFGTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGW
HCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
DRLSKVQHLGVTWLVALGSNMSALWILVANGWMQNPVGAAFNFETMRMELVDFGALIFNP
HHHHHHHHCCHHEEEECCCCCCEEEEEEECCCCCCCCCCEECHHHHHHHHHHHHHHHHCH
VAQVKFVHTVSAGYVTGAIFVLAISSYYLLKKRDLPFARRSFAIAAIFGLASTLSVILLG
HHHEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEEE
DESGYELGDVQKTKLAAIEAEWDTHPAPAPFTLFGVPNHEEMRTDYAVKIPYALGLIATR
CCCCCCCCCCCHHHEEEEEECCCCCCCCCCEEEEECCCHHHHCCCEEEECCHHHHHEEEC
STTKEVTGLKDLMQQHEVRIRNGMLAYAELEKLRAGDRSPELLASFEKNQKDLGYGLLLK
CCHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHH
KYAPNVVDASEQHIQAAVKDTIPNVTALFFSFRAMVASGFLMLLLFILATWAVAKRNAEN
HHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KPWLLKYALFALPLPWIAAQTGWYVAEGGRQPWSIGEILPTHLSASSLSTGDVWGSILAL
CCHHHHHHHHHCCCCHHHHCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
AAFYTILLIIEMYLMIKFARLGPSSLHTGKYHFEKQEPKTAVNGEALS
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MISESVVDLSRFQFAMTAMYHFLFVPLTLGLAFILAIMETTYVISGKEIYKDMTKFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHH
FGINFALGVTTGLTMEFQFGTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGW
HCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
DRLSKVQHLGVTWLVALGSNMSALWILVANGWMQNPVGAAFNFETMRMELVDFGALIFNP
HHHHHHHHCCHHEEEECCCCCCEEEEEEECCCCCCCCCCEECHHHHHHHHHHHHHHHHCH
VAQVKFVHTVSAGYVTGAIFVLAISSYYLLKKRDLPFARRSFAIAAIFGLASTLSVILLG
HHHEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEEE
DESGYELGDVQKTKLAAIEAEWDTHPAPAPFTLFGVPNHEEMRTDYAVKIPYALGLIATR
CCCCCCCCCCCHHHEEEEEECCCCCCCCCCEEEEECCCHHHHCCCEEEECCHHHHHEEEC
STTKEVTGLKDLMQQHEVRIRNGMLAYAELEKLRAGDRSPELLASFEKNQKDLGYGLLLK
CCHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHH
KYAPNVVDASEQHIQAAVKDTIPNVTALFFSFRAMVASGFLMLLLFILATWAVAKRNAEN
HHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KPWLLKYALFALPLPWIAAQTGWYVAEGGRQPWSIGEILPTHLSASSLSTGDVWGSILAL
CCHHHHHHHHHCCCCHHHHCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
AAFYTILLIIEMYLMIKFARLGPSSLHTGKYHFEKQEPKTAVNGEALS
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]