Click here to switch to the map view.

The map label for this gene is yvoA [H]

Identifier: 213157258

GI number: 213157258

Start: 2033032

End: 2033775

Strand: Direct

Name: yvoA [H]

Synonym: AB57_1945

Alternate gene names: 213157258

Gene position: 2033032-2033775 (Clockwise)

Preceding gene: 213157256

Following gene: 213157259

Centisome position: 50.19

GC content: 41.26

Gene sequence:

>744_bases
GTGAGCCAGCTACCCCAAGATCCCAAAAATCACAAGCCTCTTTACGATCAATTAAGGGAACTCATCCTTAATAAAATTGT
AAATGGTGAATATGCCGTGTTGAGTCAAATTCCATCTGAAAACGAGTTTGCTGAACAGTTTGGTGTAAGTCGAATTACAG
TTCGCCAAGCACTCAACCAATTACAGTTGGAAGGATATATTTTTAAGGTGCCAGGTAAAGGGACCTTTGTAAGTAAGCCA
AAAACGTTCCAGAACATCTCAAGTTTGCAAGGTTTTGCAGAAGCAATGTCATCTGCTGGTCACGAAATTTTAAACCGTGT
CATCTCGGCCGAGCTTAAGCAGGTCCCGATGCATGTTGTACCCAAATTAAAGTTACCAGTTAAGGCCAATGTGTATGAAA
TTCAACGTGTTCGTTTACTCAACCGTCAGCCAGTGTCGTATGAGTTGACTTATTTGCCAGAACATATTGGTTTGAAACTT
AAAGAGAAAGCGATTGATTTACGTACAACCGATATTTTCAAGGCATTAGAACAAGAGTGCGATATTCCTTTGGGACATGC
GGATTTAAGTATTGATGCCACGGTAGCGGATGAAGAATTAGCGGCTTTGTTGCAAGTCGAAATCGGAACTCCGGTATTAC
GGGTCGAACGTTTGACTCATGATGCAAATGGTCAACCGATTGACTATGAATATCTCTATTTCTCGGGCGATACCTTCCAG
TACCGTTTACGTATTCATCGTTAA

Upstream 100 bases:

>100_bases
GTAAATTTATTTTTTAACTAAAGTTATCGCTTTAAATTATTTCCAAAGCTGAAACATTTTAAACATTATTTGCTCAAGTT
GTTATAACAGGTTGTGAGCC

Downstream 100 bases:

>100_bases
TAACTCAAATAAAAATAAGGAATATTCAATGGAAAATAAATATCTTGAGTTCGATATTGTGGTGATTGGTGGTGGAACTG
CAGGGCCGATGGCTGCGATT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSQLPQDPKNHKPLYDQLRELILNKIVNGEYAVLSQIPSENEFAEQFGVSRITVRQALNQLQLEGYIFKVPGKGTFVSKP
KTFQNISSLQGFAEAMSSAGHEILNRVISAELKQVPMHVVPKLKLPVKANVYEIQRVRLLNRQPVSYELTYLPEHIGLKL
KEKAIDLRTTDIFKALEQECDIPLGHADLSIDATVADEELAALLQVEIGTPVLRVERLTHDANGQPIDYEYLYFSGDTFQ
YRLRIHR

Sequences:

>Translated_247_residues
MSQLPQDPKNHKPLYDQLRELILNKIVNGEYAVLSQIPSENEFAEQFGVSRITVRQALNQLQLEGYIFKVPGKGTFVSKP
KTFQNISSLQGFAEAMSSAGHEILNRVISAELKQVPMHVVPKLKLPVKANVYEIQRVRLLNRQPVSYELTYLPEHIGLKL
KEKAIDLRTTDIFKALEQECDIPLGHADLSIDATVADEELAALLQVEIGTPVLRVERLTHDANGQPIDYEYLYFSGDTFQ
YRLRIHR
>Mature_246_residues
SQLPQDPKNHKPLYDQLRELILNKIVNGEYAVLSQIPSENEFAEQFGVSRITVRQALNQLQLEGYIFKVPGKGTFVSKPK
TFQNISSLQGFAEAMSSAGHEILNRVISAELKQVPMHVVPKLKLPVKANVYEIQRVRLLNRQPVSYELTYLPEHIGLKLK
EKAIDLRTTDIFKALEQECDIPLGHADLSIDATVADEELAALLQVEIGTPVLRVERLTHDANGQPIDYEYLYFSGDTFQY
RLRIHR

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=228, Percent_Identity=28.5087719298246, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1790118, Length=233, Percent_Identity=26.1802575107296, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1786950, Length=238, Percent_Identity=25.2100840336134, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788418, Length=232, Percent_Identity=23.2758620689655, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28093; Mature: 27961

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLPQDPKNHKPLYDQLRELILNKIVNGEYAVLSQIPSENEFAEQFGVSRITVRQALNQ
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHCCHHHHHHHHHHH
LQLEGYIFKVPGKGTFVSKPKTFQNISSLQGFAEAMSSAGHEILNRVISAELKQVPMHVV
HHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC
PKLKLPVKANVYEIQRVRLLNRQPVSYELTYLPEHIGLKLKEKAIDLRTTDIFKALEQEC
CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHCCEEHHHHHCCHHHHHHHHHHHHC
DIPLGHADLSIDATVADEELAALLQVEIGTPVLRVERLTHDANGQPIDYEYLYFSGDTFQ
CCCCCCCCCEEEEEECHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEECCEEE
YRLRIHR
EEEEECC
>Mature Secondary Structure 
SQLPQDPKNHKPLYDQLRELILNKIVNGEYAVLSQIPSENEFAEQFGVSRITVRQALNQ
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHCCHHHHHHHHHHH
LQLEGYIFKVPGKGTFVSKPKTFQNISSLQGFAEAMSSAGHEILNRVISAELKQVPMHVV
HHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC
PKLKLPVKANVYEIQRVRLLNRQPVSYELTYLPEHIGLKLKEKAIDLRTTDIFKALEQEC
CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHCCEEHHHHHCCHHHHHHHHHHHHC
DIPLGHADLSIDATVADEELAALLQVEIGTPVLRVERLTHDANGQPIDYEYLYFSGDTFQ
CCCCCCCCCEEEEEECHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEECCEEE
YRLRIHR
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]