| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is aphB [H]
Identifier: 21245005
GI number: 21245005
Start: 5072853
End: 5074757
Strand: Reverse
Name: aphB [H]
Synonym: XAC4293
Alternate gene names: 21245005
Gene position: 5074757-5072853 (Counterclockwise)
Preceding gene: 21245006
Following gene: 21245003
Centisome position: 98.05
GC content: 66.93
Gene sequence:
>1905_bases GTGAATCAGCCCACCGAACCTCTGGATATGGATGTCTGCGCGCAGGAACCGATCCATATTCCCGGACTGATCCAGCCCTA CGGCGTGTTGCTGGTGATCGAACCGGCCGATGGCCGCATCGTGCAGGCCAGCAGCACCGCCGCCGACCTGCTCGGCGTGC CGATGGATGCCCTGCTGGGCACGCCGTACACCCAGGTGCTGGAACTGCCCGACGCGCAACCGTTCGCAGTGGACGATCAA CCGCAGCACCTGCTGCACGCCGATGTGCGCTTCCCGCAGCGCAGCGCGCCGACCGACCACCCCTGGGTGGCCGCCTGGCA TCTGTATCCGGAGCAATGGCTGGTCGAGATCGAGCCGCGCGACGCGCGCCTGATGGATGTCACCCTGCGCGAAGCGCTGC CGCTGTTGCGCAGCATCGAGCGCGATGCCGGCATCGACGAAGCGGCGGTGCGCGCGGCCAAGGGCCTGCGCAGCATGATC GGCTTCGACCGCGTGATGGTGTATCGCTTCGACGAAGAGTGGAATGGCGACGTCATCGCCGAAGCGCGCCAGCCCGAACT GGAGGCCTATCTGGGCCTGCACTACCCGGCCAGCGACATCCCGGCGCAGGCACGTGCGCTATACCTGCGCAACCGCGTGC GCCAGATCGCCGATGTGCGGTACCAGCCGTCGCCGATCCAGCCCACCTTGCATCCGCGCCTGGGCACCCCGGTGGATCTG AGCGATGTCAGCCTGCGCAGCGTCTCGCCGGTGCATCTGGAATACCTGGCCAACATGGGCGTCAGCGCCACCCTGGTGTC CTCGATCGTGGTCAACGATGCGCTGTGGGGGCTGATTTCCTGTCACCACTACAGCCCGCACTTCACCAGCCATGCCATGC GCGATGCCACCGATGCGGTGACCCGCGCGCTGGCCGGGCGCATCGGCGCGCTGCAGGCGGTGGGGCGGGCGCGGCTGGAG TCGGTGCTGCTGACCATCCGCGAAAAATTGATCACCGACTTCAACGACGCCGAGCACCTGACCGTGGACATGCTCGCCGA CATGGCCCCGGACCTGATGGACGTGGTCGACGCCGATGGCGTGGCGATCTTCCATGGCAATGAAATCAGCCGTCATGGCA GCGTGCCGGATGCAGAGGCGTTGCGCCGCATCCGCGAACATCTCGAATCCGAACACCACGACGCCCTGCGCGAGGATGCG GTCGGCGCCCTGCATGTGGACGCCATCGGCGAGGTGTTCCCGGAGTTGGCCGACCTCGCCCCACTGGCAGCCGGTTTCAT CTTCGTGCCGCTGATGCCGCAATCGCGTAGCGCCCTGTTGTGGACCCGCCGCGAGCAGGTGCAGCAGGTCAAATGGGCCG GCAACCCGCAGCTGGCCAAGTTGCAGGACATCCCCAATTCGCGGCTGTCGCCGCGCAAGAGTTTCGATCTGTGGCAGCAG ACCGTGCGCGGCCGCGCACGGCGTTGGTCGCCGCTGCATCTGGAATCGGCGCGCAGCCTGCGCGTGCTGATCGAACTGAT GGAACGCAAGCGCTTCCAGCAGGACTTCACCCTGCTCGAAGCCTCGCTGTCGCGGCTGCGCGACGGGGTGGCCATTATCG AACGCGGTGCCAAGGGCGCCGCGCACCGGCTGATGTTCGTCAACCCGGCGTTCGCCGAACTCAGCCAGACCGAAGTGGCC GACTTGATCGGTTGCGACATCCTTGCCCTGCTGGACGACGATGCCGCCCGTGGCAAGGTCGAACTGCTCGAAGAGGCGCT GCGCCTGGGCCGCGCCGCCTATGTCACCTTGCCGCTGCGCACCCGTGATGGCGCACCGGTGTATCGCCAGTTCCATCTCG AACCCTTGCCCAGCCCCAGCAGCATCACCGCGCACTGGCTGCTGCAGTTGCGCGACCCGGAGTAA
Upstream 100 bases:
>100_bases ATCGGCGCCTGGCCACCCCATCCGCACGCGACGCTGCCATCGGCGGCGCGCAGGCCATGTTCGCCCACTTCCATTCCTGC CTCGCAGCGGAGCCGCAGCC
Downstream 100 bases:
>100_bases GGGCTAAGGGCGCTGCGATCAACCCGCATGGCCAGCGCATGCGCCTGCCGCACCTCGCTCCATCAGCGGGCACGCGTGCT AAGGCGCTGCTTTCGTCCGC
Product: phytochrome-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 634; Mature: 634
Protein sequence:
>634_residues MNQPTEPLDMDVCAQEPIHIPGLIQPYGVLLVIEPADGRIVQASSTAADLLGVPMDALLGTPYTQVLELPDAQPFAVDDQ PQHLLHADVRFPQRSAPTDHPWVAAWHLYPEQWLVEIEPRDARLMDVTLREALPLLRSIERDAGIDEAAVRAAKGLRSMI GFDRVMVYRFDEEWNGDVIAEARQPELEAYLGLHYPASDIPAQARALYLRNRVRQIADVRYQPSPIQPTLHPRLGTPVDL SDVSLRSVSPVHLEYLANMGVSATLVSSIVVNDALWGLISCHHYSPHFTSHAMRDATDAVTRALAGRIGALQAVGRARLE SVLLTIREKLITDFNDAEHLTVDMLADMAPDLMDVVDADGVAIFHGNEISRHGSVPDAEALRRIREHLESEHHDALREDA VGALHVDAIGEVFPELADLAPLAAGFIFVPLMPQSRSALLWTRREQVQQVKWAGNPQLAKLQDIPNSRLSPRKSFDLWQQ TVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFTLLEASLSRLRDGVAIIERGAKGAAHRLMFVNPAFAELSQTEVA DLIGCDILALLDDDAARGKVELLEEALRLGRAAYVTLPLRTRDGAPVYRQFHLEPLPSPSSITAHWLLQLRDPE
Sequences:
>Translated_634_residues MNQPTEPLDMDVCAQEPIHIPGLIQPYGVLLVIEPADGRIVQASSTAADLLGVPMDALLGTPYTQVLELPDAQPFAVDDQ PQHLLHADVRFPQRSAPTDHPWVAAWHLYPEQWLVEIEPRDARLMDVTLREALPLLRSIERDAGIDEAAVRAAKGLRSMI GFDRVMVYRFDEEWNGDVIAEARQPELEAYLGLHYPASDIPAQARALYLRNRVRQIADVRYQPSPIQPTLHPRLGTPVDL SDVSLRSVSPVHLEYLANMGVSATLVSSIVVNDALWGLISCHHYSPHFTSHAMRDATDAVTRALAGRIGALQAVGRARLE SVLLTIREKLITDFNDAEHLTVDMLADMAPDLMDVVDADGVAIFHGNEISRHGSVPDAEALRRIREHLESEHHDALREDA VGALHVDAIGEVFPELADLAPLAAGFIFVPLMPQSRSALLWTRREQVQQVKWAGNPQLAKLQDIPNSRLSPRKSFDLWQQ TVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFTLLEASLSRLRDGVAIIERGAKGAAHRLMFVNPAFAELSQTEVA DLIGCDILALLDDDAARGKVELLEEALRLGRAAYVTLPLRTRDGAPVYRQFHLEPLPSPSSITAHWLLQLRDPE >Mature_634_residues MNQPTEPLDMDVCAQEPIHIPGLIQPYGVLLVIEPADGRIVQASSTAADLLGVPMDALLGTPYTQVLELPDAQPFAVDDQ PQHLLHADVRFPQRSAPTDHPWVAAWHLYPEQWLVEIEPRDARLMDVTLREALPLLRSIERDAGIDEAAVRAAKGLRSMI GFDRVMVYRFDEEWNGDVIAEARQPELEAYLGLHYPASDIPAQARALYLRNRVRQIADVRYQPSPIQPTLHPRLGTPVDL SDVSLRSVSPVHLEYLANMGVSATLVSSIVVNDALWGLISCHHYSPHFTSHAMRDATDAVTRALAGRIGALQAVGRARLE SVLLTIREKLITDFNDAEHLTVDMLADMAPDLMDVVDADGVAIFHGNEISRHGSVPDAEALRRIREHLESEHHDALREDA VGALHVDAIGEVFPELADLAPLAAGFIFVPLMPQSRSALLWTRREQVQQVKWAGNPQLAKLQDIPNSRLSPRKSFDLWQQ TVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFTLLEASLSRLRDGVAIIERGAKGAAHRLMFVNPAFAELSQTEVA DLIGCDILALLDDDAARGKVELLEEALRLGRAAYVTLPLRTRDGAPVYRQFHLEPLPSPSSITAHWLLQLRDPE
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 70676; Mature: 70676
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQPTEPLDMDVCAQEPIHIPGLIQPYGVLLVIEPADGRIVQASSTAADLLGVPMDALLG CCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCHHHHHCCCHHHHHC TPYTQVLELPDAQPFAVDDQPQHLLHADVRFPQRSAPTDHPWVAAWHLYPEQWLVEIEPR CCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEECCC DARLMDVTLREALPLLRSIERDAGIDEAAVRAAKGLRSMIGFDRVMVYRFDEEWNGDVIA CCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEE EARQPELEAYLGLHYPASDIPAQARALYLRNRVRQIADVRYQPSPIQPTLHPRLGTPVDL CCCCCCHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC SDVSLRSVSPVHLEYLANMGVSATLVSSIVVNDALWGLISCHHYSPHFTSHAMRDATDAV CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH TRALAGRIGALQAVGRARLESVLLTIREKLITDFNDAEHLTVDMLADMAPDLMDVVDADG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHCCCC VAIFHGNEISRHGSVPDAEALRRIREHLESEHHDALREDAVGALHVDAIGEVFPELADLA EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHH PLAAGFIFVPLMPQSRSALLWTRREQVQQVKWAGNPQLAKLQDIPNSRLSPRKSFDLWQQ HHHHCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHH TVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFTLLEASLSRLRDGVAIIERGAKGA HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC AHRLMFVNPAFAELSQTEVADLIGCDILALLDDDAARGKVELLEEALRLGRAAYVTLPLR CCEEEEECHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEE TRDGAPVYRQFHLEPLPSPSSITAHWLLQLRDPE CCCCCCHHHHEECCCCCCCCCEEEEEEEEECCCC >Mature Secondary Structure MNQPTEPLDMDVCAQEPIHIPGLIQPYGVLLVIEPADGRIVQASSTAADLLGVPMDALLG CCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCHHHHHCCCHHHHHC TPYTQVLELPDAQPFAVDDQPQHLLHADVRFPQRSAPTDHPWVAAWHLYPEQWLVEIEPR CCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEECCC DARLMDVTLREALPLLRSIERDAGIDEAAVRAAKGLRSMIGFDRVMVYRFDEEWNGDVIA CCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEE EARQPELEAYLGLHYPASDIPAQARALYLRNRVRQIADVRYQPSPIQPTLHPRLGTPVDL CCCCCCHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC SDVSLRSVSPVHLEYLANMGVSATLVSSIVVNDALWGLISCHHYSPHFTSHAMRDATDAV CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH TRALAGRIGALQAVGRARLESVLLTIREKLITDFNDAEHLTVDMLADMAPDLMDVVDADG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHCCCC VAIFHGNEISRHGSVPDAEALRRIREHLESEHHDALREDAVGALHVDAIGEVFPELADLA EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHH PLAAGFIFVPLMPQSRSALLWTRREQVQQVKWAGNPQLAKLQDIPNSRLSPRKSFDLWQQ HHHHCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHH TVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFTLLEASLSRLRDGVAIIERGAKGA HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC AHRLMFVNPAFAELSQTEVADLIGCDILALLDDDAARGKVELLEEALRLGRAAYVTLPLR CCEEEEECHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEE TRDGAPVYRQFHLEPLPSPSSITAHWLLQLRDPE CCCCCCHHHHEECCCCCCCCCEEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]