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The map label for this gene is ynaJ [H]

Identifier: 21244913

GI number: 21244913

Start: 4940566

End: 4941948

Strand: Reverse

Name: ynaJ [H]

Synonym: XAC4196

Alternate gene names: 21244913

Gene position: 4941948-4940566 (Counterclockwise)

Preceding gene: 21244917

Following gene: 21244912

Centisome position: 95.49

GC content: 64.21

Gene sequence:

>1383_bases
ATGCCGTCATCGCCCGCAACGTCTCCTGCATCGGCGCGCCTGCGCTGGCGCGAAAAGCTGGGCTATGGCGCCGGCGATCT
GGGGCTGAATCTGTACTGGGCCAACATCTCGGCGTTTTTGCTGATCTTCTACACCGACACCATGCACCTGCCGGCTGCTG
CGGTCGGCACCATGATCCTCTTGACCAAGATCGCCGATGCGATCGCCGACCCGGCGATGGGCGCATTGGCCGACCGCACG
CGTAGCCGGCTTGGCAAGTTCCGCCCGTACCTGCTGTGGGGCGCGCTGCCGATGGCCGCTGCCGGCGTGCTTGCCTACAC
CACGCCGGATCTGGACCACCATGGGCGCATGTGGTGGGCCACGATCACCTTCCTGGTGATGATGCTGGCCTACACGGTGG
TGAGCATTCCGTACTCGGCATTATCCGGCGTGATTACCGCCGACAGCCAGCAGCGCACCGGCCTGATCAGCCTGCGATTC
ATCGGTGCGTTTGCAGGGACCACATTGGTCAATTACTTCACGATGGACCTGGTGCGCTGGTTCGGCGCAGGCAACGACGC
GCTGGGATGGCAACGCACGATGATGCTGTACGGTGCGGTGGCGCTGGCGTTGCTCGTCACCGTGGCGCTGACCACGCGCG
AACGCGTGCAGCCGCCGCCGCAACAACGCACACCGATTCGTCGCGACATCGCCGATCTGCTGCAGAACAAACCGTGGTGC
GTACTGTTCGTGCTGTCGTTGATCATCATGATCACGATCACCATGCGCGGTGGTGCGGGCGTGTACTACCTCAAGTACTA
CGTACAACGCCCGGATCTGGTTGGCCTGTTTCTGGGCAGCTATTCGGTGGCCCTGGGCGTGGGTGCGGCCATCACGCCGC
TGCTGACGCGGCGCTGGGACAAGCGCCAGCTGATGTTCTGGCTGATGGTGCTCGTCGGCCTGCTGAGCTGCGCGATGTTT
TTCGTGCCGGCCGATGCGGTGTGGGCGGTGTTTGTCTTGAACATGCTGATCGGCCTGGCGCTGGGGCCGAAATCGCCGTT
GGCGTTTTCGATGTATGCCGATAGCGCCGACTACACCGAATGGCGCACCGGCCGCCGTGCCACGGCGATGACGTTCGCCG
CGGCGACGTTTTCGCAAAAGCTCGGCGGGGCATTGGCCTCGGCCGGCATTGCCTGGGTGCTGGCTGCGATGGGTTATGTC
GCCAACACCGCGCAGTCCACCGGGTCGTTGACCGGCATCGTGCTGCTGCTGACCGTGATTCCAGGCGCGGTTGCACTGCT
GGCGGCCTGGACCATGCGTTTTTATCCGCTGGACGACGGGCTGTTGAACCGCATCCAGCATGAACTGGCCGCGCGCAAGC
GCGACGAACCGGAGCACCCCTGA

Upstream 100 bases:

>100_bases
CAGCCGATGCGTGGTGTAGCGTCGGCGCTCCTCGCCAGGTGCGCGGGCACTCAGCGTAACGGCGTGCTCGGCCGGGTACA
ACGCATTTGAAGGTGTGTCG

Downstream 100 bases:

>100_bases
CCGTGTCTGCAACGCCCCACGCCACGTCCGATGCGCTGTCCAGCTTGATGGCGCCCAGCGCCGATGGCGCGCGCTATGCG
CTCTACAGCCCTACTGCAAT

Product: cation symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MPSSPATSPASARLRWREKLGYGAGDLGLNLYWANISAFLLIFYTDTMHLPAAAVGTMILLTKIADAIADPAMGALADRT
RSRLGKFRPYLLWGALPMAAAGVLAYTTPDLDHHGRMWWATITFLVMMLAYTVVSIPYSALSGVITADSQQRTGLISLRF
IGAFAGTTLVNYFTMDLVRWFGAGNDALGWQRTMMLYGAVALALLVTVALTTRERVQPPPQQRTPIRRDIADLLQNKPWC
VLFVLSLIIMITITMRGGAGVYYLKYYVQRPDLVGLFLGSYSVALGVGAAITPLLTRRWDKRQLMFWLMVLVGLLSCAMF
FVPADAVWAVFVLNMLIGLALGPKSPLAFSMYADSADYTEWRTGRRATAMTFAAATFSQKLGGALASAGIAWVLAAMGYV
ANTAQSTGSLTGIVLLLTVIPGAVALLAAWTMRFYPLDDGLLNRIQHELAARKRDEPEHP

Sequences:

>Translated_460_residues
MPSSPATSPASARLRWREKLGYGAGDLGLNLYWANISAFLLIFYTDTMHLPAAAVGTMILLTKIADAIADPAMGALADRT
RSRLGKFRPYLLWGALPMAAAGVLAYTTPDLDHHGRMWWATITFLVMMLAYTVVSIPYSALSGVITADSQQRTGLISLRF
IGAFAGTTLVNYFTMDLVRWFGAGNDALGWQRTMMLYGAVALALLVTVALTTRERVQPPPQQRTPIRRDIADLLQNKPWC
VLFVLSLIIMITITMRGGAGVYYLKYYVQRPDLVGLFLGSYSVALGVGAAITPLLTRRWDKRQLMFWLMVLVGLLSCAMF
FVPADAVWAVFVLNMLIGLALGPKSPLAFSMYADSADYTEWRTGRRATAMTFAAATFSQKLGGALASAGIAWVLAAMGYV
ANTAQSTGSLTGIVLLLTVIPGAVALLAAWTMRFYPLDDGLLNRIQHELAARKRDEPEHP
>Mature_459_residues
PSSPATSPASARLRWREKLGYGAGDLGLNLYWANISAFLLIFYTDTMHLPAAAVGTMILLTKIADAIADPAMGALADRTR
SRLGKFRPYLLWGALPMAAAGVLAYTTPDLDHHGRMWWATITFLVMMLAYTVVSIPYSALSGVITADSQQRTGLISLRFI
GAFAGTTLVNYFTMDLVRWFGAGNDALGWQRTMMLYGAVALALLVTVALTTRERVQPPPQQRTPIRRDIADLLQNKPWCV
LFVLSLIIMITITMRGGAGVYYLKYYVQRPDLVGLFLGSYSVALGVGAAITPLLTRRWDKRQLMFWLMVLVGLLSCAMFF
VPADAVWAVFVLNMLIGLALGPKSPLAFSMYADSADYTEWRTGRRATAMTFAAATFSQKLGGALASAGIAWVLAAMGYVA
NTAQSTGSLTGIVLLLTVIPGAVALLAAWTMRFYPLDDGLLNRIQHELAARKRDEPEHP

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Escherichia coli, GI87082306, Length=451, Percent_Identity=40.3547671840355, Blast_Score=311, Evalue=8e-86,
Organism=Escherichia coli, GI1786466, Length=447, Percent_Identity=34.0044742729307, Blast_Score=279, Evalue=2e-76,
Organism=Escherichia coli, GI145693206, Length=470, Percent_Identity=28.936170212766, Blast_Score=179, Evalue=4e-46,
Organism=Escherichia coli, GI48994989, Length=454, Percent_Identity=27.7533039647577, Blast_Score=166, Evalue=4e-42,
Organism=Escherichia coli, GI1790561, Length=458, Percent_Identity=27.7292576419214, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787902, Length=464, Percent_Identity=28.6637931034483, Blast_Score=157, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50236; Mature: 50105

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00872 NA_GALACTOSIDE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSSPATSPASARLRWREKLGYGAGDLGLNLYWANISAFLLIFYTDTMHLPAAAVGTMIL
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHEEECCCCCCHHHHHHHHH
LTKIADAIADPAMGALADRTRSRLGKFRPYLLWGALPMAAAGVLAYTTPDLDHHGRMWWA
HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHH
TITFLVMMLAYTVVSIPYSALSGVITADSQQRTGLISLRFIGAFAGTTLVNYFTMDLVRW
HHHHHHHHHHHHHHHCCHHHHCCCEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
FGAGNDALGWQRTMMLYGAVALALLVTVALTTRERVQPPPQQRTPIRRDIADLLQNKPWC
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHH
VLFVLSLIIMITITMRGGAGVYYLKYYVQRPDLVGLFLGSYSVALGVGAAITPLLTRRWD
HHHHHHHHHHHHHEECCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCC
KRQLMFWLMVLVGLLSCAMFFVPADAVWAVFVLNMLIGLALGPKSPLAFSMYADSADYTE
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHH
WRTGRRATAMTFAAATFSQKLGGALASAGIAWVLAAMGYVANTAQSTGSLTGIVLLLTVI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
PGAVALLAAWTMRFYPLDDGLLNRIQHELAARKRDEPEHP
HHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PSSPATSPASARLRWREKLGYGAGDLGLNLYWANISAFLLIFYTDTMHLPAAAVGTMIL
CCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHEEECCCCCCHHHHHHHHH
LTKIADAIADPAMGALADRTRSRLGKFRPYLLWGALPMAAAGVLAYTTPDLDHHGRMWWA
HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHH
TITFLVMMLAYTVVSIPYSALSGVITADSQQRTGLISLRFIGAFAGTTLVNYFTMDLVRW
HHHHHHHHHHHHHHHCCHHHHCCCEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
FGAGNDALGWQRTMMLYGAVALALLVTVALTTRERVQPPPQQRTPIRRDIADLLQNKPWC
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHH
VLFVLSLIIMITITMRGGAGVYYLKYYVQRPDLVGLFLGSYSVALGVGAAITPLLTRRWD
HHHHHHHHHHHHHEECCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCC
KRQLMFWLMVLVGLLSCAMFFVPADAVWAVFVLNMLIGLALGPKSPLAFSMYADSADYTE
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHH
WRTGRRATAMTFAAATFSQKLGGALASAGIAWVLAAMGYVANTAQSTGSLTGIVLLLTVI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
PGAVALLAAWTMRFYPLDDGLLNRIQHELAARKRDEPEHP
HHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]