Click here to switch to the map view.

The map label for this gene is ndvB [H]

Identifier: 21244912

GI number: 21244912

Start: 4938164

End: 4940518

Strand: Reverse

Name: ndvB [H]

Synonym: XAC4195

Alternate gene names: 21244912

Gene position: 4940518-4938164 (Counterclockwise)

Preceding gene: 21244913

Following gene: 77748761

Centisome position: 95.46

GC content: 66.07

Gene sequence:

>2355_bases
ATGGCGCCCAGCGCCGATGGCGCGCGCTATGCGCTCTACAGCCCTACTGCAATGCCCAATGCCAGCGGCTTCTTGTGGAA
CCGCCGCATGATGGTGCAGCTGACCTGCCGCGGTTATGCCACCGGCCAGTTCATGCAGCCGGAGCCATCGAAATACGCGC
ATGCGCCGATGCTGGAAGCGCGCAATTTCATGATGCCCGAGCAGCCGTACTACGCGCATCATCCTGGGCGGTTTTTCTAT
CTCAAGGACGAAGACACCGGCGCGCTGTACTCGGTGCCGCACGAGCCGGTGCGCGCGCAGCCGCAGGCGTTCGAATTCTC
TGCCGGCAAGCACGATGTGCGCTGGCGGGTGCGCCACGACGATATCGTGGTGGAGTTGTGCGTTTCTCTGCCCACCGACG
ATGCGGTGGAGCTGTGGGAATGTCGTGTGCACAACGGATCCGGGCGCACACGCAGACTGAGCCTGTATGCGTATTTCCCG
GTCGGCTACATGTCGTGGATGCATCAATCCGGCGGATACGAGCCGGCCTTGGGCGGGATCGTCTGCCGTAGCGTGGCGCC
GTATCAAAAGGTGGACGATTACTTCCGCCAGCGCGATTTCAAGGATTGCACCTTCCTGCTGCACGAGCAGACGCCGGTCG
CCTGGGACGCGCAGCAGATGGCATTCGAAGGCGAGGGTGGGTTGCACGCGCCTTCGGCCGTACAGGCCGAACAGCTGGGC
AACCACGATGCGCACTACGAAACGCCGGCGGCCGCGTTGCAATACCGGCTGACCCTGGACGCCGATGCGGCCAGCGTGTA
TCGCTTCGCATTCGGGCCGGCCAAGGACGATGCCGAAATCGCCGCGCTGCGTGCGCGCTATCTGTCCGAAGCTGGTTTCG
CCCAGGCGGCGCGTGCATATGCGGACTATCTGCAGGCCGGCCGTGGCTGCGTTCAGATCGCAACACCGGATGCGGCGCTG
GACAATCTGGTCAACCACTGGTTGCCGCGCCAGGTGTTCTATCACGGCGACGTCAATCGCCTGACCACCGATCCGCAGAC
GCGCAACTATCTGCAGGACCATATGGGCATGGCCTACCTGCAGCCTGCCACCGCACGCGCGGCGCTGTTGCATGCCCTGT
CGCAGCAGGAGCCCAGCGGCGCAATGCCGGACGGCATCTTGTTGGTGGAAGGCGCCGAGCTCAAATACATCAACCAGGTG
CCGCATACCGATCATTGCGTGTGGTTGCCGATCTTCCTGAGCGCCTATCTTTCCGAAACCGGCGATACCAGCATCCTGGG
CGCGCGCGTGGAAACCCATGACGGGCAGCGCCTGAGCGTGGCCGAGCGCCTGGATGCGGCCATGCAATGGCTGCTGGATG
CGCGCGATGCACGTGGGTTGAGCTTCATCGCGCAGGGCGACTGGTGCGACCCGATGAACATGGTCGGCTGGCGCGGCAAG
GGCGTGTCCGGCTGGCTCACCGTGGCCACCGCGTATGCAGTGCGCCTGTGGTCGGAGATCTGCACCGCGCAAGGGCGCAG
CGTGCAGGCGCAGACATTCGGGGAGGCGGTTGCCGTCATCAACGCCGACGCCAACCGTGAGCTGTGGGACGGCAACTGGT
ACGCGCGCGGCATCACCGACGACGGGGTGCGCTTCGGCATCGCCGACGATGTGGAGGGGCGCATCTATCTCAATCCGCAG
AGCTTCGCGCTGCTGGCCGGCACTGCCGATGCGCAGCAACGTGCGGCGCTGCTGGAGGCGGTGCGCGAGCAGCTGCACAC
GCCGTACGGCCCGGTGATGCTGGCGCCGGCGTACACGCACATGCGCGACGACGTGGGCCGGCTGACCCAGAAGTGGCCGG
GTGCGGCGGAAAACGGTGCGGTGTACAACCACGCGGCGGCATTCTATCTGTACAGCCTTTACCAGATTGGCGAGGCCGAC
CGCGCCTGGGAGATCCTGCGCGCCCTGCTGCCAGGGCCGACACGCGAGGATGTGCTGCAACGCGGCCACCTGCCGGTGTC
GCTGCCCAACTACTACCGTGGCGCGTGGCATCAGTATCCGCGTACGGCCGGGCGTTCGAGCCAGCTGTTCAACACCGGCA
CGGTGGCGTGGGTGTATCGCTGCGTGCTGGAAGGCCTGTTCGGGTTGGTGGGCGAGGGCGATGCGCTGGCGATCCGCCCG
CAGCTGCCCTCGCATTGGCCGCAGGCGCGTGCGAGGCGCCAGTTCCGTGGTGCGGACTTCGACCTCACGCTGACGCGCGA
GCCGGGCCGCACCGCGATGGAGGTGCTGGTGGATGGCGAGCTCTGTCCGGAGCAGCGCATCGGCAACATCGCGCGCGGGC
AGGTGTATCGGGTCGAGGTAAGGCTGCCCGGTTGA

Upstream 100 bases:

>100_bases
GCATCCAGCATGAACTGGCCGCGCGCAAGCGCGACGAACCGGAGCACCCCTGACCGTGTCTGCAACGCCCCACGCCACGT
CCGATGCGCTGTCCAGCTTG

Downstream 100 bases:

>100_bases
TGGCGGGTCGCTCGCCGTGTCAGCACTGGCGGCGGCAATGGGTGGCTGAAGCAGCGGGAGCGCGCTCGCGACGCCCTCCT
GCCGGCTTGCGTCAGCGTGT

Product: NdvB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 784; Mature: 783

Protein sequence:

>784_residues
MAPSADGARYALYSPTAMPNASGFLWNRRMMVQLTCRGYATGQFMQPEPSKYAHAPMLEARNFMMPEQPYYAHHPGRFFY
LKDEDTGALYSVPHEPVRAQPQAFEFSAGKHDVRWRVRHDDIVVELCVSLPTDDAVELWECRVHNGSGRTRRLSLYAYFP
VGYMSWMHQSGGYEPALGGIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQMAFEGEGGLHAPSAVQAEQLG
NHDAHYETPAAALQYRLTLDADAASVYRFAFGPAKDDAEIAALRARYLSEAGFAQAARAYADYLQAGRGCVQIATPDAAL
DNLVNHWLPRQVFYHGDVNRLTTDPQTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDGILLVEGAELKYINQV
PHTDHCVWLPIFLSAYLSETGDTSILGARVETHDGQRLSVAERLDAAMQWLLDARDARGLSFIAQGDWCDPMNMVGWRGK
GVSGWLTVATAYAVRLWSEICTAQGRSVQAQTFGEAVAVINADANRELWDGNWYARGITDDGVRFGIADDVEGRIYLNPQ
SFALLAGTADAQQRAALLEAVREQLHTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHAAAFYLYSLYQIGEAD
RAWEILRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLEGLFGLVGEGDALAIRP
QLPSHWPQARARRQFRGADFDLTLTREPGRTAMEVLVDGELCPEQRIGNIARGQVYRVEVRLPG

Sequences:

>Translated_784_residues
MAPSADGARYALYSPTAMPNASGFLWNRRMMVQLTCRGYATGQFMQPEPSKYAHAPMLEARNFMMPEQPYYAHHPGRFFY
LKDEDTGALYSVPHEPVRAQPQAFEFSAGKHDVRWRVRHDDIVVELCVSLPTDDAVELWECRVHNGSGRTRRLSLYAYFP
VGYMSWMHQSGGYEPALGGIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQMAFEGEGGLHAPSAVQAEQLG
NHDAHYETPAAALQYRLTLDADAASVYRFAFGPAKDDAEIAALRARYLSEAGFAQAARAYADYLQAGRGCVQIATPDAAL
DNLVNHWLPRQVFYHGDVNRLTTDPQTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDGILLVEGAELKYINQV
PHTDHCVWLPIFLSAYLSETGDTSILGARVETHDGQRLSVAERLDAAMQWLLDARDARGLSFIAQGDWCDPMNMVGWRGK
GVSGWLTVATAYAVRLWSEICTAQGRSVQAQTFGEAVAVINADANRELWDGNWYARGITDDGVRFGIADDVEGRIYLNPQ
SFALLAGTADAQQRAALLEAVREQLHTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHAAAFYLYSLYQIGEAD
RAWEILRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLEGLFGLVGEGDALAIRP
QLPSHWPQARARRQFRGADFDLTLTREPGRTAMEVLVDGELCPEQRIGNIARGQVYRVEVRLPG
>Mature_783_residues
APSADGARYALYSPTAMPNASGFLWNRRMMVQLTCRGYATGQFMQPEPSKYAHAPMLEARNFMMPEQPYYAHHPGRFFYL
KDEDTGALYSVPHEPVRAQPQAFEFSAGKHDVRWRVRHDDIVVELCVSLPTDDAVELWECRVHNGSGRTRRLSLYAYFPV
GYMSWMHQSGGYEPALGGIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQMAFEGEGGLHAPSAVQAEQLGN
HDAHYETPAAALQYRLTLDADAASVYRFAFGPAKDDAEIAALRARYLSEAGFAQAARAYADYLQAGRGCVQIATPDAALD
NLVNHWLPRQVFYHGDVNRLTTDPQTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDGILLVEGAELKYINQVP
HTDHCVWLPIFLSAYLSETGDTSILGARVETHDGQRLSVAERLDAAMQWLLDARDARGLSFIAQGDWCDPMNMVGWRGKG
VSGWLTVATAYAVRLWSEICTAQGRSVQAQTFGEAVAVINADANRELWDGNWYARGITDDGVRFGIADDVEGRIYLNPQS
FALLAGTADAQQRAALLEAVREQLHTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHAAAFYLYSLYQIGEADR
AWEILRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLEGLFGLVGEGDALAIRPQ
LPSHWPQARARRQFRGADFDLTLTREPGRTAMEVLVDGELCPEQRIGNIARGQVYRVEVRLPG

Specific function: Involved in the production of beta-(1,2)-glucan. It is involved not only in invasion but also in bacteroid development [H]

COG id: COG3459

COG function: function code G; Cellobiose phosphorylase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens ChvB [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008928
- InterPro:   IPR009342
- InterPro:   IPR019282
- InterPro:   IPR021478
- InterPro:   IPR011013
- InterPro:   IPR010383
- InterPro:   IPR010403 [H]

Pfam domain/function: PF06204 CBM_X; PF10091 DUF2329; PF11329 DUF3131; PF06165 Glyco_transf_36; PF06205 GT36_AF [H]

EC number: NA

Molecular weight: Translated: 87456; Mature: 87325

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPSADGARYALYSPTAMPNASGFLWNRRMMVQLTCRGYATGQFMQPEPSKYAHAPMLEA
CCCCCCCCEEEEECCCCCCCCCCEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHH
RNFMMPEQPYYAHHPGRFFYLKDEDTGALYSVPHEPVRAQPQAFEFSAGKHDVRWRVRHD
HCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCEEECCCCCCEEEEEECC
DIVVELCVSLPTDDAVELWECRVHNGSGRTRRLSLYAYFPVGYMSWMHQSGGYEPALGGI
CEEEHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHCCCCCCCHHHH
VCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQMAFEGEGGLHAPSAVQAEQLG
HHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHEECCCCCCCCCCCHHHHHCC
NHDAHYETPAAALQYRLTLDADAASVYRFAFGPAKDDAEIAALRARYLSEAGFAQAARAY
CCCCCCCCCHHHEEEEEEECCCHHHEEHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ADYLQAGRGCVQIATPDAALDNLVNHWLPRQVFYHGDVNRLTTDPQTRNYLQDHMGMAYL
HHHHHCCCCEEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEE
QPATARAALLHALSQQEPSGAMPDGILLVEGAELKYINQVPHTDHCVWLPIFLSAYLSET
CCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEECCCCCCCCEEHHHHHHHHHHHCC
GDTSILGARVETHDGQRLSVAERLDAAMQWLLDARDARGLSFIAQGDWCDPMNMVGWRGK
CCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
GVSGWLTVATAYAVRLWSEICTAQGRSVQAQTFGEAVAVINADANRELWDGNWYARGITD
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCEEEEEECCCCCCEECCCEEEECCCC
DGVRFGIADDVEGRIYLNPQSFALLAGTADAQQRAALLEAVREQLHTPYGPVMLAPAYTH
CCEEECCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEECCHHHH
MRDDVGRLTQKWPGAAENGAVYNHAAAFYLYSLYQIGEADRAWEILRALLPGPTREDVLQ
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHH
RGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLEGLFGLVGEGDALAIRP
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
QLPSHWPQARARRQFRGADFDLTLTREPGRTAMEVLVDGELCPEQRIGNIARGQVYRVEV
CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCEEHEEECCCCCCHHHCCCCCCCEEEEEEE
RLPG
ECCC
>Mature Secondary Structure 
APSADGARYALYSPTAMPNASGFLWNRRMMVQLTCRGYATGQFMQPEPSKYAHAPMLEA
CCCCCCCEEEEECCCCCCCCCCEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHH
RNFMMPEQPYYAHHPGRFFYLKDEDTGALYSVPHEPVRAQPQAFEFSAGKHDVRWRVRHD
HCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCEEECCCCCCEEEEEECC
DIVVELCVSLPTDDAVELWECRVHNGSGRTRRLSLYAYFPVGYMSWMHQSGGYEPALGGI
CEEEHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHCCCCCCCHHHH
VCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQMAFEGEGGLHAPSAVQAEQLG
HHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHEECCCCCCCCCCCHHHHHCC
NHDAHYETPAAALQYRLTLDADAASVYRFAFGPAKDDAEIAALRARYLSEAGFAQAARAY
CCCCCCCCCHHHEEEEEEECCCHHHEEHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ADYLQAGRGCVQIATPDAALDNLVNHWLPRQVFYHGDVNRLTTDPQTRNYLQDHMGMAYL
HHHHHCCCCEEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEE
QPATARAALLHALSQQEPSGAMPDGILLVEGAELKYINQVPHTDHCVWLPIFLSAYLSET
CCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEECCCCCCCCEEHHHHHHHHHHHCC
GDTSILGARVETHDGQRLSVAERLDAAMQWLLDARDARGLSFIAQGDWCDPMNMVGWRGK
CCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
GVSGWLTVATAYAVRLWSEICTAQGRSVQAQTFGEAVAVINADANRELWDGNWYARGITD
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCEEEEEECCCCCCEECCCEEEECCCC
DGVRFGIADDVEGRIYLNPQSFALLAGTADAQQRAALLEAVREQLHTPYGPVMLAPAYTH
CCEEECCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEECCHHHH
MRDDVGRLTQKWPGAAENGAVYNHAAAFYLYSLYQIGEADRAWEILRALLPGPTREDVLQ
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHH
RGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLEGLFGLVGEGDALAIRP
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
QLPSHWPQARARRQFRGADFDLTLTREPGRTAMEVLVDGELCPEQRIGNIARGQVYRVEV
CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCEEHEEECCCCCCHHHCCCCCCCEEEEEEE
RLPG
ECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2154461; 11481430 [H]