Click here to switch to the map view.

The map label for this gene is 21244838

Identifier: 21244838

GI number: 21244838

Start: 4838787

End: 4840121

Strand: Reverse

Name: 21244838

Synonym: XAC4121

Alternate gene names: NA

Gene position: 4840121-4838787 (Counterclockwise)

Preceding gene: 21244839

Following gene: 21244837

Centisome position: 93.52

GC content: 67.04

Gene sequence:

>1335_bases
ATGCAGAACAACAAGGTCGTGTGGAGCGAAGGGCTGTTCCTGCGCCCGCAGCATCTGCAGCAGCAAGAGCGCTACCTGGA
GCGCTACGTCGATCTGCGTGCCGCGCGATTGCGGCCGCATGCCTGGGGCGTGAGCGAGCTGGAATGGGAGAGCGACCTGC
TGGCGGTGGGCAAGCTGGGCCTGCGGCGCGCGCGTGGCGTGTTCGCCGATGGCACGCCCTTCGCGATGCCGGGCGACGAC
CCGCTGCCGGTTGCGCTGGAGGTCGAGCCCAACTGCCGCGACCAGATCGTCTATCTCACCGTACCGCTGCGGGTGCCGGC
GCAGCCCGAACTCGGGCGCCCGGAATCGCCGGCCGATCAGCTGTTTCGCTACCGCGTGCGCGAGACCGAAAGCAACGACG
CCTCCGGCAGCACCAGCGAAGCGGTGTTGATGGAAGTCGGCGGGTTGAGCACGCGGTTGCTGCCGCACTCGCAACCGTTG
GAGGGGCTGGACCGCATCGCGGTGGCGCGCATCATCGAGATGCGCGCCGACCGTCAGGTGGTGCTGGACCCGCATTTCAT
TCCCAGCGCGATGGTATGCCAGGCGGCGCCGCGCTTGACCACCTTTCTGACCGAGTTGCTCGGTCTGTTGCATCAGCGCG
GCGAAGCGCTGGCATCGCGCGTGACGCTGACCGATCGCGGCGGTGCGGCCGATATCGCAGACTTTCTGCTGCTGCAGCTG
GTCAACCGTTGGCAGCCGCAGATGGCGCACTGGGCGGCCGCGCCATTGGCGCATCCGGAAGAGTTGTTTCGCGCCTTGGT
GGCGCTGGCCGGTGAACTGAGCACGTTCACCGCTGCCGGCAAGCGCCCGCCTGCATGGCCTGCCTATCGGCACCAATCGC
AGCAGGACAGCTTCGAGCCGGTGATCGGCGCCTTGCGCAGCAGTTTGAGCGCAGTGCTCGAACAGACCGCCACGCCGCTC
CCGATCCAGGCGCGCAAGTTCGGCGTGTGGGTGGCGATGGTGCCGGACCCGGGCCTGCTCGACAGCGCGGCGTTCGTGCT
CGCGGCCAAGGCCGACATGCCCAGCGAAGAGTTGCGCCGGCAATTGCCCGCGCACGCCAAGATCGGGCCGGTGGAGCAGA
TTCGCGATCTGGTCAATCTGCAGTTGCCCGGCATCGTGGCCACGCCCATGCCGGTGGCGCCGCGACAGATTCCGTATCAC
GCCGGCTATCTGTATTTCGAATTCGACAAGAGCGCAGCGTTGTGGCGAACGCTGAAGACCTCCGGCGGTATCGCATTCCA
CTTCGGCAGCGAATTCGCCGGGTTGGACCTGCAATTGTGGGCGATCCGGAGCTGA

Upstream 100 bases:

>100_bases
GCGCATCGACGTTCCTGCAGCGTGCCTGGCAGGTCGCATGCGACGCGGTGCGGATGCCTGTGCGCTGCATCGGTGGCCGA
CCTCCCTCAGCGAGTGCATC

Downstream 100 bases:

>100_bases
GCATGAGCCGACCTGTTGCCGATCTGGCGCCAGCCTACGCCGCACCGCTGCCGGCCGCAGGGGGCACCGGCGTGCCCAGC
GAAGACACCGACATCAGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Protein ImpJ/VasE; Conserved Protein; Replication/Virulence Associated Protein; Type VI Secretion System Protein EvpM; Protein ImpJ; Type VI Secretion System Protein; Type VI Secretion System Protein ImpJ; Type VI Secretion; Type VI Secretion System Core Protein; T6ss M; Type VI Secretion Protein VasE; Temperature-Dependent Protein Secretion ImpJ

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MQNNKVVWSEGLFLRPQHLQQQERYLERYVDLRAARLRPHAWGVSELEWESDLLAVGKLGLRRARGVFADGTPFAMPGDD
PLPVALEVEPNCRDQIVYLTVPLRVPAQPELGRPESPADQLFRYRVRETESNDASGSTSEAVLMEVGGLSTRLLPHSQPL
EGLDRIAVARIIEMRADRQVVLDPHFIPSAMVCQAAPRLTTFLTELLGLLHQRGEALASRVTLTDRGGAADIADFLLLQL
VNRWQPQMAHWAAAPLAHPEELFRALVALAGELSTFTAAGKRPPAWPAYRHQSQQDSFEPVIGALRSSLSAVLEQTATPL
PIQARKFGVWVAMVPDPGLLDSAAFVLAAKADMPSEELRRQLPAHAKIGPVEQIRDLVNLQLPGIVATPMPVAPRQIPYH
AGYLYFEFDKSAALWRTLKTSGGIAFHFGSEFAGLDLQLWAIRS

Sequences:

>Translated_444_residues
MQNNKVVWSEGLFLRPQHLQQQERYLERYVDLRAARLRPHAWGVSELEWESDLLAVGKLGLRRARGVFADGTPFAMPGDD
PLPVALEVEPNCRDQIVYLTVPLRVPAQPELGRPESPADQLFRYRVRETESNDASGSTSEAVLMEVGGLSTRLLPHSQPL
EGLDRIAVARIIEMRADRQVVLDPHFIPSAMVCQAAPRLTTFLTELLGLLHQRGEALASRVTLTDRGGAADIADFLLLQL
VNRWQPQMAHWAAAPLAHPEELFRALVALAGELSTFTAAGKRPPAWPAYRHQSQQDSFEPVIGALRSSLSAVLEQTATPL
PIQARKFGVWVAMVPDPGLLDSAAFVLAAKADMPSEELRRQLPAHAKIGPVEQIRDLVNLQLPGIVATPMPVAPRQIPYH
AGYLYFEFDKSAALWRTLKTSGGIAFHFGSEFAGLDLQLWAIRS
>Mature_444_residues
MQNNKVVWSEGLFLRPQHLQQQERYLERYVDLRAARLRPHAWGVSELEWESDLLAVGKLGLRRARGVFADGTPFAMPGDD
PLPVALEVEPNCRDQIVYLTVPLRVPAQPELGRPESPADQLFRYRVRETESNDASGSTSEAVLMEVGGLSTRLLPHSQPL
EGLDRIAVARIIEMRADRQVVLDPHFIPSAMVCQAAPRLTTFLTELLGLLHQRGEALASRVTLTDRGGAADIADFLLLQL
VNRWQPQMAHWAAAPLAHPEELFRALVALAGELSTFTAAGKRPPAWPAYRHQSQQDSFEPVIGALRSSLSAVLEQTATPL
PIQARKFGVWVAMVPDPGLLDSAAFVLAAKADMPSEELRRQLPAHAKIGPVEQIRDLVNLQLPGIVATPMPVAPRQIPYH
AGYLYFEFDKSAALWRTLKTSGGIAFHFGSEFAGLDLQLWAIRS

Specific function: Unknown

COG id: COG3522

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49111; Mature: 49111

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNNKVVWSEGLFLRPQHLQQQERYLERYVDLRAARLRPHAWGVSELEWESDLLAVGKLG
CCCCCEEECCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
LRRARGVFADGTPFAMPGDDPLPVALEVEPNCRDQIVYLTVPLRVPAQPELGRPESPADQ
HHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCHHH
LFRYRVRETESNDASGSTSEAVLMEVGGLSTRLLPHSQPLEGLDRIAVARIIEMRADRQV
HHHHHHHCCCCCCCCCCCCCCHHEECCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCEE
VLDPHFIPSAMVCQAAPRLTTFLTELLGLLHQRGEALASRVTLTDRGGAADIADFLLLQL
EECCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHH
VNRWQPQMAHWAAAPLAHPEELFRALVALAGELSTFTAAGKRPPAWPAYRHQSQQDSFEP
HHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHH
VIGALRSSLSAVLEQTATPLPIQARKFGVWVAMVPDPGLLDSAAFVLAAKADMPSEELRR
HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCHHHHHEEEEECCCCCHHHHHH
QLPAHAKIGPVEQIRDLVNLQLPGIVATPMPVAPRQIPYHAGYLYFEFDKSAALWRTLKT
HCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHC
SGGIAFHFGSEFAGLDLQLWAIRS
CCCEEEEECCCCCCCEEEEEEECC
>Mature Secondary Structure
MQNNKVVWSEGLFLRPQHLQQQERYLERYVDLRAARLRPHAWGVSELEWESDLLAVGKLG
CCCCCEEECCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
LRRARGVFADGTPFAMPGDDPLPVALEVEPNCRDQIVYLTVPLRVPAQPELGRPESPADQ
HHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCHHH
LFRYRVRETESNDASGSTSEAVLMEVGGLSTRLLPHSQPLEGLDRIAVARIIEMRADRQV
HHHHHHHCCCCCCCCCCCCCCHHEECCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCEE
VLDPHFIPSAMVCQAAPRLTTFLTELLGLLHQRGEALASRVTLTDRGGAADIADFLLLQL
EECCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHH
VNRWQPQMAHWAAAPLAHPEELFRALVALAGELSTFTAAGKRPPAWPAYRHQSQQDSFEP
HHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHH
VIGALRSSLSAVLEQTATPLPIQARKFGVWVAMVPDPGLLDSAAFVLAAKADMPSEELRR
HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCHHHHHEEEEECCCCCHHHHHH
QLPAHAKIGPVEQIRDLVNLQLPGIVATPMPVAPRQIPYHAGYLYFEFDKSAALWRTLKT
HCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHC
SGGIAFHFGSEFAGLDLQLWAIRS
CCCEEEEECCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA