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The map label for this gene is yafC [H]

Identifier: 21244755

GI number: 21244755

Start: 4730010

End: 4730924

Strand: Reverse

Name: yafC [H]

Synonym: XAC4038

Alternate gene names: 21244755

Gene position: 4730924-4730010 (Counterclockwise)

Preceding gene: 21244757

Following gene: 77748751

Centisome position: 91.41

GC content: 69.07

Gene sequence:

>915_bases
ATGGCCGACACGATCAGCTGGGAGCTTTACCGGTCCTTCCTTGCGGTGCTGGAGGAGGGCTCGTTGTCGGCAGCGGCACG
CGCGCTGGGTCTGACCCAGCCCACCATCGGGCGGCATGTCGCAGCGTTGGAGGACCTGCTGGCGGTGCCGCTGTTCGTCC
GTTCGCAAACCGGGCTACTGCCGACCGACGCCGCACAGGCGTTGCGCAGCCATGCACGGGCGATGGCCGACATTGCCGCG
GCGTTGCAGCGCGCAGCCAGCCGTCATGGTGAGGCGGTGCAGGGCACGGTCAGGATCTCGGCCAGCGAGGTGGTCGGTGC
GGAAATCCTGCCGCCGATCCTGGCTGCGTTGCGTGCTGCGCATCCGCAGCTGCGCATGGAACTGGTGTTGAGCAATCGGG
TGCAGGATCTGCTGCACCGCCAAGCCGATGTGGCGGTGCGCATGATCCGGCCGCAGCAGGACCTGCTGGTGGCGCGTCGC
GTCGGCAAGGTCGCGATCGGGCTCCACGCTCATCCGGACTATGTGGACCGGCATGGCCTGCCGCAGCGCCCGGAGGATCT
GGCCCAGCATGCGCTGGTAGGTTTCGACACGGACACCCCGTTTCTGCGCGGCGCGCGCAAGGGCTTCCCGTTTTGGGAAC
CTGCGGCCTTCGCGCTACGGGCCGACAGCGATCTGGCACAGCTGGCGCTGATCCGCGCCGGGTGCGGCATTGGCTTCTGC
CAGGCGATGTTGGCACGGCGAACGCCGGGCCTGCTGCCGGTGTTGCCGCAGCAGGTCGGCGTTGCCCTGGACGTCTGGGT
CACGATGCATCAAGACCTGCGCGCCAGCGCTGCCTGCAGTGCGGTGTTCGCGGCCCTGGCAGATGGATTGGCCGCGCACT
GCGCCGCGCCGGACGCTGGCCTCGGCAGCAACTGA

Upstream 100 bases:

>100_bases
TGTGTCATGGGTCTGCTCCGCTGTCGAGATGCGGCCAGTGTGGATAAGCCGTGGCTACGAATAAATTGCCGAAGCTGCGC
GTGCAGCTATACATTTATGT

Downstream 100 bases:

>100_bases
CAGCGGCTGGGTGACTGCGCCCTGCGTGGCATCCAGCCGCTGCGATCAACGAGTCCGTTTGCCGTTTGCGTGCGATGTCC
GCCTGCGCGACGCGATGCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MADTISWELYRSFLAVLEEGSLSAAARALGLTQPTIGRHVAALEDLLAVPLFVRSQTGLLPTDAAQALRSHARAMADIAA
ALQRAASRHGEAVQGTVRISASEVVGAEILPPILAALRAAHPQLRMELVLSNRVQDLLHRQADVAVRMIRPQQDLLVARR
VGKVAIGLHAHPDYVDRHGLPQRPEDLAQHALVGFDTDTPFLRGARKGFPFWEPAAFALRADSDLAQLALIRAGCGIGFC
QAMLARRTPGLLPVLPQQVGVALDVWVTMHQDLRASAACSAVFAALADGLAAHCAAPDAGLGSN

Sequences:

>Translated_304_residues
MADTISWELYRSFLAVLEEGSLSAAARALGLTQPTIGRHVAALEDLLAVPLFVRSQTGLLPTDAAQALRSHARAMADIAA
ALQRAASRHGEAVQGTVRISASEVVGAEILPPILAALRAAHPQLRMELVLSNRVQDLLHRQADVAVRMIRPQQDLLVARR
VGKVAIGLHAHPDYVDRHGLPQRPEDLAQHALVGFDTDTPFLRGARKGFPFWEPAAFALRADSDLAQLALIRAGCGIGFC
QAMLARRTPGLLPVLPQQVGVALDVWVTMHQDLRASAACSAVFAALADGLAAHCAAPDAGLGSN
>Mature_303_residues
ADTISWELYRSFLAVLEEGSLSAAARALGLTQPTIGRHVAALEDLLAVPLFVRSQTGLLPTDAAQALRSHARAMADIAAA
LQRAASRHGEAVQGTVRISASEVVGAEILPPILAALRAAHPQLRMELVLSNRVQDLLHRQADVAVRMIRPQQDLLVARRV
GKVAIGLHAHPDYVDRHGLPQRPEDLAQHALVGFDTDTPFLRGARKGFPFWEPAAFALRADSDLAQLALIRAGCGIGFCQ
AMLARRTPGLLPVLPQQVGVALDVWVTMHQDLRASAACSAVFAALADGLAAHCAAPDAGLGSN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=189, Percent_Identity=31.2169312169312, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789639, Length=191, Percent_Identity=28.7958115183246, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI145693193, Length=232, Percent_Identity=28.0172413793103, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787128, Length=244, Percent_Identity=26.6393442622951, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789440, Length=188, Percent_Identity=27.6595744680851, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788297, Length=149, Percent_Identity=32.8859060402685, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=32.6086956521739, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787589, Length=186, Percent_Identity=25.8064516129032, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=151, Percent_Identity=26.4900662251656, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081978, Length=192, Percent_Identity=27.6041666666667, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790208, Length=139, Percent_Identity=28.0575539568345, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32318; Mature: 32186

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTISWELYRSFLAVLEEGSLSAAARALGLTQPTIGRHVAALEDLLAVPLFVRSQTGLL
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PTDAAQALRSHARAMADIAAALQRAASRHGEAVQGTVRISASEVVGAEILPPILAALRAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHC
HPQLRMELVLSNRVQDLLHRQADVAVRMIRPQQDLLVARRVGKVAIGLHAHPDYVDRHGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCCHHHHCCC
PQRPEDLAQHALVGFDTDTPFLRGARKGFPFWEPAAFALRADSDLAQLALIRAGCGIGFC
CCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHEEECCCHHHHHHHHHHCCCHHHH
QAMLARRTPGLLPVLPQQVGVALDVWVTMHQDLRASAACSAVFAALADGLAAHCAAPDAG
HHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LGSN
CCCC
>Mature Secondary Structure 
ADTISWELYRSFLAVLEEGSLSAAARALGLTQPTIGRHVAALEDLLAVPLFVRSQTGLL
CCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PTDAAQALRSHARAMADIAAALQRAASRHGEAVQGTVRISASEVVGAEILPPILAALRAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHC
HPQLRMELVLSNRVQDLLHRQADVAVRMIRPQQDLLVARRVGKVAIGLHAHPDYVDRHGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCCHHHHCCC
PQRPEDLAQHALVGFDTDTPFLRGARKGFPFWEPAAFALRADSDLAQLALIRAGCGIGFC
CCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHEEECCCHHHHHHHHHHCCCHHHH
QAMLARRTPGLLPVLPQQVGVALDVWVTMHQDLRASAACSAVFAALADGLAAHCAAPDAG
HHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LGSN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]