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The map label for this gene is rarD [H]

Identifier: 21244719

GI number: 21244719

Start: 4693526

End: 4693966

Strand: Reverse

Name: rarD [H]

Synonym: XAC4001

Alternate gene names: 21244719

Gene position: 4693966-4693526 (Counterclockwise)

Preceding gene: 21244720

Following gene: 77748749

Centisome position: 90.69

GC content: 67.8

Gene sequence:

>441_bases
ATGAGCGCGGTGTCGTCGCAGGAAGCGCGCCGCGGATTGTTGATCACCGCCTCCACCTTCGTGCTGTGGGGGCTGGTGCC
GGTGTACTGGCATCTGCTCAAGGCGGTGCCGTCGCTGCAGATCATCGCCCACCGCATCGTGTGGAGCACGGTGCTGGTGG
TGGCCTGGCTGCTGGCGAGCTCGGGCCTGCGCTGGTGGCGCAGCATCGCCGCGCAGCCTCGCGCGCTGCGCATGCTGGCC
GGCAGCAGCGTGGCGATCGCGTTCAATTGGGGCCTGTACATCTGGGCGATCAACGCCGGGCATGTGATCGAAGCCAGCCT
GGGGTACTTCATCAACCCGCTGCTGAGCGTCTTGCTGGGCGTGCTGGTGTTGAAAGAGCGCCTGCGCCGCATCCAGTGGG
TAGCGGTGGCCTGTGCGCCGCAGCGGGCGTGCTGTGGCTGA

Upstream 100 bases:

>100_bases
GCGCCTGGCTCGGCCACGAGCGCTTCAGCGCGCAGGACATCGGTGCGATGGCGGTGATCCTGGCCGGCGTGCTGGTGGTC
ACCTTCGCCAAGGCGCGGCG

Downstream 100 bases:

>100_bases
CCATCGATGCCGGCGCGCCGCCGTGGATTGCCTTGGGGCTGGCGGTGTCCTTCGGTATTTACGGGCTGCTGCGCAAATTG
GTGGCGGTGGATGCGGTGGC

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MSAVSSQEARRGLLITASTFVLWGLVPVYWHLLKAVPSLQIIAHRIVWSTVLVVAWLLASSGLRWWRSIAAQPRALRMLA
GSSVAIAFNWGLYIWAINAGHVIEASLGYFINPLLSVLLGVLVLKERLRRIQWVAVACAPQRACCG

Sequences:

>Translated_146_residues
MSAVSSQEARRGLLITASTFVLWGLVPVYWHLLKAVPSLQIIAHRIVWSTVLVVAWLLASSGLRWWRSIAAQPRALRMLA
GSSVAIAFNWGLYIWAINAGHVIEASLGYFINPLLSVLLGVLVLKERLRRIQWVAVACAPQRACCG
>Mature_145_residues
SAVSSQEARRGLLITASTFVLWGLVPVYWHLLKAVPSLQIIAHRIVWSTVLVVAWLLASSGLRWWRSIAAQPRALRMLAG
SSVAIAFNWGLYIWAINAGHVIEASLGYFINPLLSVLLGVLVLKERLRRIQWVAVACAPQRACCG

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=143, Percent_Identity=39.1608391608392, Blast_Score=122, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 16129; Mature: 15998

Theoretical pI: Translated: 11.64; Mature: 11.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVSSQEARRGLLITASTFVLWGLVPVYWHLLKAVPSLQIIAHRIVWSTVLVVAWLLAS
CCCCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SGLRWWRSIAAQPRALRMLAGSSVAIAFNWGLYIWAINAGHVIEASLGYFINPLLSVLLG
CCHHHHHHHHCCCHHHHHHCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
VLVLKERLRRIQWVAVACAPQRACCG
HHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SAVSSQEARRGLLITASTFVLWGLVPVYWHLLKAVPSLQIIAHRIVWSTVLVVAWLLAS
CCCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SGLRWWRSIAAQPRALRMLAGSSVAIAFNWGLYIWAINAGHVIEASLGYFINPLLSVLLG
CCHHHHHHHHCCCHHHHHHCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
VLVLKERLRRIQWVAVACAPQRACCG
HHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA