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The map label for this gene is radC [C]

Identifier: 21244634

GI number: 21244634

Start: 4600881

End: 4601558

Strand: Direct

Name: radC [C]

Synonym: XAC3915

Alternate gene names: 21244634

Gene position: 4600881-4601558 (Clockwise)

Preceding gene: 21244630

Following gene: 21244635

Centisome position: 88.9

GC content: 70.94

Gene sequence:

>678_bases
ATGCACATACACGACTGGCCCACCCACGAACGCCCGCGCGAGAAACTTCTGGCGCGCGGGGCCACTGCCTTGTCCGATGC
CGAGCTGCTGGCGATCCTCGTCGGCTCCGGCTTGCGCGGCCAGGATGCGGTGCAGACCGCGCGCGATCTGCTGCATCGGC
ACGGCCCGCTGCGTCTGTTGCTGGACCGCCCGGCCAAGGCGCTGACGCGCCTGCCCGGGCTGGGCCCGGCCTCGGCCTGC
AAGTTCGCCGCCGCGATGGAGCTGGCCCAGCGGCACCTGATGAGCGCGCTGGAGCGCGGGGAGGCCCTCAGCGACCCGCC
CAGCGTGGGCCGCTACTTCTCGCAGCGGCTACGCGCGCGGGCCTATGAAGTGTTCGCGGTGCTGTTCCTGGACAACCGCC
ACCGCGCCATCGCCTTCGAAGAACTGTTCACCGGCACCATCGACGGGGCCGACATCCACCCGCGCGAAGTGGTCCGGCGG
GCGCTGCTGCACAACGCGGCGGCGGTGATCGTCGGGCACAACCACCCGTCGGGTAATCCGGAGCCCTCCGAGGCCGACCG
CGCGGTCACCAAGCGCCTGCTGGACAGCCTGGAGCTGGTGGACATCCGCCTGCTGGACCATTTCGTCATCGGCGACGGTC
GGCCGGTGTCGTTCGCCGAACGCGGCTGGCTGGAATGA

Upstream 100 bases:

>100_bases
TCACGTCGGGGTCGTCCTACGGTTACAAGGACAACTAGATTAGCCGATGCCTCTGCTTGGCCTGATGGGCGTCGGCGATG
AGCACCGGCAATCTCGCCAT

Downstream 100 bases:

>100_bases
GCAGTGGTGCGCTGACCTGAACCATTGCTCGGACCCTGCGGCACGCGGTCGGGTAAAATCGCTGGTTTGGTTCCAAGCAG
ATCCCACGTGAAAGCCCTAC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MHIHDWPTHERPREKLLARGATALSDAELLAILVGSGLRGQDAVQTARDLLHRHGPLRLLLDRPAKALTRLPGLGPASAC
KFAAAMELAQRHLMSALERGEALSDPPSVGRYFSQRLRARAYEVFAVLFLDNRHRAIAFEELFTGTIDGADIHPREVVRR
ALLHNAAAVIVGHNHPSGNPEPSEADRAVTKRLLDSLELVDIRLLDHFVIGDGRPVSFAERGWLE

Sequences:

>Translated_225_residues
MHIHDWPTHERPREKLLARGATALSDAELLAILVGSGLRGQDAVQTARDLLHRHGPLRLLLDRPAKALTRLPGLGPASAC
KFAAAMELAQRHLMSALERGEALSDPPSVGRYFSQRLRARAYEVFAVLFLDNRHRAIAFEELFTGTIDGADIHPREVVRR
ALLHNAAAVIVGHNHPSGNPEPSEADRAVTKRLLDSLELVDIRLLDHFVIGDGRPVSFAERGWLE
>Mature_225_residues
MHIHDWPTHERPREKLLARGATALSDAELLAILVGSGLRGQDAVQTARDLLHRHGPLRLLLDRPAKALTRLPGLGPASAC
KFAAAMELAQRHLMSALERGEALSDPPSVGRYFSQRLRARAYEVFAVLFLDNRHRAIAFEELFTGTIDGADIHPREVVRR
ALLHNAAAVIVGHNHPSGNPEPSEADRAVTKRLLDSLELVDIRLLDHFVIGDGRPVSFAERGWLE

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=40.8450704225352, Blast_Score=185, Evalue=2e-48,
Organism=Escherichia coli, GI2367100, Length=160, Percent_Identity=46.25, Blast_Score=130, Evalue=5e-32,
Organism=Escherichia coli, GI1788312, Length=151, Percent_Identity=43.7086092715232, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788997, Length=140, Percent_Identity=44.2857142857143, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24873; Mature: 24873

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIHDWPTHERPREKLLARGATALSDAELLAILVGSGLRGQDAVQTARDLLHRHGPLRLL
CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEE
LDRPAKALTRLPGLGPASACKFAAAMELAQRHLMSALERGEALSDPPSVGRYFSQRLRAR
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AYEVFAVLFLDNRHRAIAFEELFTGTIDGADIHPREVVRRALLHNAAAVIVGHNHPSGNP
HHHHHHHEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCC
EPSEADRAVTKRLLDSLELVDIRLLDHFVIGDGRPVSFAERGWLE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MHIHDWPTHERPREKLLARGATALSDAELLAILVGSGLRGQDAVQTARDLLHRHGPLRLL
CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEE
LDRPAKALTRLPGLGPASACKFAAAMELAQRHLMSALERGEALSDPPSVGRYFSQRLRAR
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AYEVFAVLFLDNRHRAIAFEELFTGTIDGADIHPREVVRRALLHNAAAVIVGHNHPSGNP
HHHHHHHEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCC
EPSEADRAVTKRLLDSLELVDIRLLDHFVIGDGRPVSFAERGWLE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA