| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is 21244566
Identifier: 21244566
GI number: 21244566
Start: 4520935
End: 4521975
Strand: Direct
Name: 21244566
Synonym: XAC3842
Alternate gene names: NA
Gene position: 4520935-4521975 (Clockwise)
Preceding gene: 21244565
Following gene: 21244567
Centisome position: 87.35
GC content: 61.0
Gene sequence:
>1041_bases ATGACGATGCGCCGCCAACTCAACACCCTGTATGTCACCACCGATGGTGCCTGGTTGCACAAGGACGGTGCCAATGTCGT CCTGAATGTGGAGCGGCAAGAACGCACACGATTGCCGGTTCACATGCTGGAGAGCATCGTCTGCATCGGACGTGTCGGAG TCTCGCCTCAGTTACTCGGCTTCTGTGCCGAGCAAGGCATCAGCATCTGTTATTTGACTGCGCAAGGGCGCTTTCTCGCG CGTGTCGAAGGCCCGGTGTCCGGAAATGTGCTGCTTCGCCGCGAACAGTACCGATGCAGCGACGACCCCGTGCGTTGCGC CGCGATTGTGCGTCACATGCTGGCAGGAAAAATCCACAACCAGCGTGCCGTCCTGGCGCGCGGCTGGCGCGACCACGGCG ACCGCATGATCGATATCCCCGCCTTTCAACACGCACTCAAGCGACTCAAGCGCATTCCACAGCGCCTGCTCATCGAGACC AGTGTTGACGTGCTGCGTGGCCTGGAAGGCGAGGCAGCGCAGTCGTATTTCGGCGTCTTCGGCCAGCTGGTGCGCACCGA GTCGCCGCTGCTGCGCTTTGGCGGACGCAATCGCCGCCCACCGCGCGACGCCTTCAATGCGTTGCTGTCGTTTCTCTACA CCTTGCTGACCCACGACTGCCGTTCGGCCTTGGAAACGGTTGGTCTGGACCCGGCAGTCGGCTTTCTGCATCGCGACCGA CCAGGACGGCCAAGCCTGGCCCTGGACCTTGCAGAGGAATTCAGGCCACTGCTTGGCGAGCGCCTGGCACTGTCGCTGAT CAACCGCCGGCAATTGAACCAGCGCGACTTCCAAGTCTTCGACAACGGCGCGGTTCTTCTCAAGGACGATGCGCGCAAGA CGGTGCTGATCGCCTACCAGGAGCGCAAACGCGAACAGCTTCAACATGCCTTACTGGGTGAAAAGATCGACATCGGCCTA CTGCCCTTTGTGCAAGCACAGTTGATGGCACGGCACCTGCGTGGCGATCTGGATGGCTACCCCTCCTTCTTCTGGAAATG A
Upstream 100 bases:
>100_bases GCTGCGATGCCTGTTCATTGATCGACCTGTGTCAGCCGCGCCTGCTCGGCCGCGGCAGCGTGGACACCTGGCTGCGTCGA CAACTCGATGCTGAAGAGGA
Downstream 100 bases:
>100_bases CGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTACGACGTCAGCACCAGCTCTCCCGGGGGCGAGAAGCGCCTGCGCAA GGTCGCCAAAGCCTGCCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MTMRRQLNTLYVTTDGAWLHKDGANVVLNVERQERTRLPVHMLESIVCIGRVGVSPQLLGFCAEQGISICYLTAQGRFLA RVEGPVSGNVLLRREQYRCSDDPVRCAAIVRHMLAGKIHNQRAVLARGWRDHGDRMIDIPAFQHALKRLKRIPQRLLIET SVDVLRGLEGEAAQSYFGVFGQLVRTESPLLRFGGRNRRPPRDAFNALLSFLYTLLTHDCRSALETVGLDPAVGFLHRDR PGRPSLALDLAEEFRPLLGERLALSLINRRQLNQRDFQVFDNGAVLLKDDARKTVLIAYQERKREQLQHALLGEKIDIGL LPFVQAQLMARHLRGDLDGYPSFFWK
Sequences:
>Translated_346_residues MTMRRQLNTLYVTTDGAWLHKDGANVVLNVERQERTRLPVHMLESIVCIGRVGVSPQLLGFCAEQGISICYLTAQGRFLA RVEGPVSGNVLLRREQYRCSDDPVRCAAIVRHMLAGKIHNQRAVLARGWRDHGDRMIDIPAFQHALKRLKRIPQRLLIET SVDVLRGLEGEAAQSYFGVFGQLVRTESPLLRFGGRNRRPPRDAFNALLSFLYTLLTHDCRSALETVGLDPAVGFLHRDR PGRPSLALDLAEEFRPLLGERLALSLINRRQLNQRDFQVFDNGAVLLKDDARKTVLIAYQERKREQLQHALLGEKIDIGL LPFVQAQLMARHLRGDLDGYPSFFWK >Mature_345_residues TMRRQLNTLYVTTDGAWLHKDGANVVLNVERQERTRLPVHMLESIVCIGRVGVSPQLLGFCAEQGISICYLTAQGRFLAR VEGPVSGNVLLRREQYRCSDDPVRCAAIVRHMLAGKIHNQRAVLARGWRDHGDRMIDIPAFQHALKRLKRIPQRLLIETS VDVLRGLEGEAAQSYFGVFGQLVRTESPLLRFGGRNRRPPRDAFNALLSFLYTLLTHDCRSALETVGLDPAVGFLHRDRP GRPSLALDLAEEFRPLLGERLALSLINRRQLNQRDFQVFDNGAVLLKDDARKTVLIAYQERKREQLQHALLGEKIDIGLL PFVQAQLMARHLRGDLDGYPSFFWK
Specific function: Unknown
COG id: COG1518
COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002729 - InterPro: IPR019858 [H]
Pfam domain/function: PF01867 DUF48 [H]
EC number: NA
Molecular weight: Translated: 39330; Mature: 39199
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMRRQLNTLYVTTDGAWLHKDGANVVLNVERQERTRLPVHMLESIVCIGRVGVSPQLLG CCCHHCCCEEEEEECCCEEEECCCCEEEEECHHHHHCCCHHHHHHHHHHHCCCCCHHHHH FCAEQGISICYLTAQGRFLARVEGPVSGNVLLRREQYRCSDDPVRCAAIVRHMLAGKIHN HHHHCCCEEEEEEECCCEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC QRAVLARGWRDHGDRMIDIPAFQHALKRLKRIPQRLLIETSVDVLRGLEGEAAQSYFGVF CHHHHHCCCHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH GQLVRTESPLLRFGGRNRRPPRDAFNALLSFLYTLLTHDCRSALETVGLDPAVGFLHRDR HHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC PGRPSLALDLAEEFRPLLGERLALSLINRRQLNQRDFQVFDNGAVLLKDDARKTVLIAYQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCCEEEEEEH ERKREQLQHALLGEKIDIGLLPFVQAQLMARHLRGDLDGYPSFFWK HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure TMRRQLNTLYVTTDGAWLHKDGANVVLNVERQERTRLPVHMLESIVCIGRVGVSPQLLG CCHHCCCEEEEEECCCEEEECCCCEEEEECHHHHHCCCHHHHHHHHHHHCCCCCHHHHH FCAEQGISICYLTAQGRFLARVEGPVSGNVLLRREQYRCSDDPVRCAAIVRHMLAGKIHN HHHHCCCEEEEEEECCCEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC QRAVLARGWRDHGDRMIDIPAFQHALKRLKRIPQRLLIETSVDVLRGLEGEAAQSYFGVF CHHHHHCCCHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH GQLVRTESPLLRFGGRNRRPPRDAFNALLSFLYTLLTHDCRSALETVGLDPAVGFLHRDR HHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC PGRPSLALDLAEEFRPLLGERLALSLINRRQLNQRDFQVFDNGAVLLKDDARKTVLIAYQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCCEEEEEEH ERKREQLQHALLGEKIDIGLLPFVQAQLMARHLRGDLDGYPSFFWK HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]