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The map label for this gene is 21244563

Identifier: 21244563

GI number: 21244563

Start: 4517789

End: 4519423

Strand: Direct

Name: 21244563

Synonym: XAC3839

Alternate gene names: NA

Gene position: 4517789-4519423 (Clockwise)

Preceding gene: 21244562

Following gene: 21244564

Centisome position: 87.29

GC content: 64.59

Gene sequence:

>1635_bases
TTGGGACAAGACCAGCTACGCGCTGGGCGTCAGTGCCAGCAGCAAGCGCAGCGCGCAGGAACACGCTGCATTCAAGACCT
TGCACCAGCAGGCGCTCGGCGGCAGCGAAGACCCCGGGCTGCGTGCGCTATTGACGTTCCTCGACACCTGGTCGCCCGCG
CAATTCGCCGATCATCCACAGTTTTCCCGTCACGGCGAGGCGCTATTGGATACCAACCTGGTGTTCCGCCTGGAGGGCGA
CACCGGCTATCTGCATCAGCGCGCCACGGCGCGCGCGGCATGGGAGCGACTGCAAGAGGCCAAAGCGCCGACGGCGCATC
CGGCATGTGCCTGGTCAGTGGCTTACGCGCGCCGTTGGCGCGGCTGCACCCGCCGATCAAAGGATTTGAAAGCACGGGAT
CTTCCATCGTTTCTTTTAACGCGGATGCTTATATTTCATACAGAGGTTCGCTCCTAAAAGTTCAGTCGAAACACAAGGAA
AATGATAGCGGTGCCAATGCGCCGATTTCTAAATCTGCGGCTTTCGCCTACACCACCGCGCTCAACCATCTGCTGCGCCG
CGACCCACGCAATCGCCAACGTGTGCAGATCGGCGACACCACGGTGGTGTTCTGGGCGCAGGCCAGGACGACCGCGCACG
CTGAGGAGGCCGAAGATCTGATCGCCGATTTCCTGCGCGGCGGTGAAACAGAAGGCCCTGGCATCGCCGACGGCCAGGCC
ACCCAGCGCCTGCACCTGGCACTGGAGCAGGTGCGACAGGCACGTCCACTACGCGAAATGGACGACGCACTGGACGACGA
CGCCCGCATCTTCGTACTGGGCCTGGCACCCAACGCCTCGCGCCTGTCGATCCGCTTCTGGGAAACGCAGACGCTGGCCG
GCTTTGCCGCACGGCTGGCTGCCCACTATCAGGACCTCAAGCTCGAGCCGCCAGCCTGGAAACGCGCGCCTACCCCGCAG
TTTCTCGCCCTGCAGACAGCGCCGGTCTACGGCGAGCACGGCAAGCCCAAGGCCGAGGACGTCTCGCCGCTTCTGGCAGG
GGAGCTGACCCGCGCCATCCTCGCCGGCACCCGCTATCCGCGCAGCCTGCTCGGCGGCATCGTCATGCGCTTCCGCGCCG
ATGGGCAGGTCAACCCGCTGCGCGTGGCCTTGTGCCGGGCAGTACTGGCACGCGAGGCACGTCTGGACACGCAACAAGGA
CTGTCATCCACCAAGGGAGAGCCCCCCGTGAGTCTCGATACCGCCAATACCGACCCCGGCTACTTGCTGGGCCGGCTGTT
CTCATCGCTGGAAAACCTGCAACGCACCGCACTGGGCGGGCAGGTCAACGCCACCATCCGCGACCGTTACTACGGCGCCG
CCTCTGCAACCCCGGCGAGCATTTTCCCGGTGCTGTTGCGCAATGCGCAGAATCACTTCGGCAAGCTGCGCAAAGACAAG
GCGGGCCTGGCGGTGAACCTGGAAAAAGAAGTCGGCCAGATCATCGACGCACTTCCCGCCAGCTTCCCGCGCAGCCTGCC
CATCCACGAGCAAGGCCGTTTCGCCATCGGTTACTACCACCAGACCCAGGCGCGCTTCGCCCGCAACAACGGCCAGGACG
CCCCCGACACCGCTTCCGAAGGAGAACCCACATGA

Upstream 100 bases:

>100_bases
TGGAGGACGAACATGACTACGACAGCAAGAAGCGAGTCGCCAAGGCGCTGAGCGTGCCGCAGCCGGAGAAGCGCACCGTG
GCGGTCAAGTCCAACTTTCT

Downstream 100 bases:

>100_bases
GCGCCATCGCCCACCGCTATGAATTCGTCTATCTATTCGACGTGGCCAACGGTAACCCTAACGGTGACCCCGACGCCGGC
AACCTGCCGCGCCTGGACCC

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated Csd1 Family Protein; CRISPR-Associated RAMP Csd1 Family Protein; Csd1 Family CRISPR-Associated Protein; Crispr-Protein; CRISPR-Associated Protein; CRISPR-Associated Protein Csd2 Family; Crispr-Associated Protein Csd1 Family

Number of amino acids: Translated: 544; Mature: 543

Protein sequence:

>544_residues
MGQDQLRAGRQCQQQAQRAGTRCIQDLAPAGARRQRRPRAACAIDVPRHLVARAIRRSSTVFPSRRGAIGYQPGVPPGGR
HRLSASARHGARGMGATARGQSADGASGMCLVSGLRAPLARLHPPIKGFESTGSSIVSFNADAYISYRGSLLKVQSKHKE
NDSGANAPISKSAAFAYTTALNHLLRRDPRNRQRVQIGDTTVVFWAQARTTAHAEEAEDLIADFLRGGETEGPGIADGQA
TQRLHLALEQVRQARPLREMDDALDDDARIFVLGLAPNASRLSIRFWETQTLAGFAARLAAHYQDLKLEPPAWKRAPTPQ
FLALQTAPVYGEHGKPKAEDVSPLLAGELTRAILAGTRYPRSLLGGIVMRFRADGQVNPLRVALCRAVLAREARLDTQQG
LSSTKGEPPVSLDTANTDPGYLLGRLFSSLENLQRTALGGQVNATIRDRYYGAASATPASIFPVLLRNAQNHFGKLRKDK
AGLAVNLEKEVGQIIDALPASFPRSLPIHEQGRFAIGYYHQTQARFARNNGQDAPDTASEGEPT

Sequences:

>Translated_544_residues
MGQDQLRAGRQCQQQAQRAGTRCIQDLAPAGARRQRRPRAACAIDVPRHLVARAIRRSSTVFPSRRGAIGYQPGVPPGGR
HRLSASARHGARGMGATARGQSADGASGMCLVSGLRAPLARLHPPIKGFESTGSSIVSFNADAYISYRGSLLKVQSKHKE
NDSGANAPISKSAAFAYTTALNHLLRRDPRNRQRVQIGDTTVVFWAQARTTAHAEEAEDLIADFLRGGETEGPGIADGQA
TQRLHLALEQVRQARPLREMDDALDDDARIFVLGLAPNASRLSIRFWETQTLAGFAARLAAHYQDLKLEPPAWKRAPTPQ
FLALQTAPVYGEHGKPKAEDVSPLLAGELTRAILAGTRYPRSLLGGIVMRFRADGQVNPLRVALCRAVLAREARLDTQQG
LSSTKGEPPVSLDTANTDPGYLLGRLFSSLENLQRTALGGQVNATIRDRYYGAASATPASIFPVLLRNAQNHFGKLRKDK
AGLAVNLEKEVGQIIDALPASFPRSLPIHEQGRFAIGYYHQTQARFARNNGQDAPDTASEGEPT
>Mature_543_residues
GQDQLRAGRQCQQQAQRAGTRCIQDLAPAGARRQRRPRAACAIDVPRHLVARAIRRSSTVFPSRRGAIGYQPGVPPGGRH
RLSASARHGARGMGATARGQSADGASGMCLVSGLRAPLARLHPPIKGFESTGSSIVSFNADAYISYRGSLLKVQSKHKEN
DSGANAPISKSAAFAYTTALNHLLRRDPRNRQRVQIGDTTVVFWAQARTTAHAEEAEDLIADFLRGGETEGPGIADGQAT
QRLHLALEQVRQARPLREMDDALDDDARIFVLGLAPNASRLSIRFWETQTLAGFAARLAAHYQDLKLEPPAWKRAPTPQF
LALQTAPVYGEHGKPKAEDVSPLLAGELTRAILAGTRYPRSLLGGIVMRFRADGQVNPLRVALCRAVLAREARLDTQQGL
SSTKGEPPVSLDTANTDPGYLLGRLFSSLENLQRTALGGQVNATIRDRYYGAASATPASIFPVLLRNAQNHFGKLRKDKA
GLAVNLEKEVGQIIDALPASFPRSLPIHEQGRFAIGYYHQTQARFARNNGQDAPDTASEGEPT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58887; Mature: 58756

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQDQLRAGRQCQQQAQRAGTRCIQDLAPAGARRQRRPRAACAIDVPRHLVARAIRRSST
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEECHHHHHHHHHHHHCCC
VFPSRRGAIGYQPGVPPGGRHRLSASARHGARGMGATARGQSADGASGMCLVSGLRAPLA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RLHPPIKGFESTGSSIVSFNADAYISYRGSLLKVQSKHKENDSGANAPISKSAAFAYTTA
HHCCCCCCHHCCCCEEEEECCCEEEEECCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHH
LNHLLRRDPRNRQRVQIGDTTVVFWAQARTTAHAEEAEDLIADFLRGGETEGPGIADGQA
HHHHHHCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
TQRLHLALEQVRQARPLREMDDALDDDARIFVLGLAPNASRLSIRFWETQTLAGFAARLA
HHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECHHHHHHHHHHHH
AHYQDLKLEPPAWKRAPTPQFLALQTAPVYGEHGKPKAEDVSPLLAGELTRAILAGTRYP
HHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCC
RSLLGGIVMRFRADGQVNPLRVALCRAVLAREARLDTQQGLSSTKGEPPVSLDTANTDPG
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHCHHHCCCCCCEEEECCCCCHH
YLLGRLFSSLENLQRTALGGQVNATIRDRYYGAASATPASIFPVLLRNAQNHFGKLRKDK
HHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
AGLAVNLEKEVGQIIDALPASFPRSLPIHEQGRFAIGYYHQTQARFARNNGQDAPDTASE
CCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCC
GEPT
CCCC
>Mature Secondary Structure 
GQDQLRAGRQCQQQAQRAGTRCIQDLAPAGARRQRRPRAACAIDVPRHLVARAIRRSST
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEECHHHHHHHHHHHHCCC
VFPSRRGAIGYQPGVPPGGRHRLSASARHGARGMGATARGQSADGASGMCLVSGLRAPLA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RLHPPIKGFESTGSSIVSFNADAYISYRGSLLKVQSKHKENDSGANAPISKSAAFAYTTA
HHCCCCCCHHCCCCEEEEECCCEEEEECCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHH
LNHLLRRDPRNRQRVQIGDTTVVFWAQARTTAHAEEAEDLIADFLRGGETEGPGIADGQA
HHHHHHCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
TQRLHLALEQVRQARPLREMDDALDDDARIFVLGLAPNASRLSIRFWETQTLAGFAARLA
HHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECHHHHHHHHHHHH
AHYQDLKLEPPAWKRAPTPQFLALQTAPVYGEHGKPKAEDVSPLLAGELTRAILAGTRYP
HHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCC
RSLLGGIVMRFRADGQVNPLRVALCRAVLAREARLDTQQGLSSTKGEPPVSLDTANTDPG
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHCHHHCCCCCCEEEECCCCCHH
YLLGRLFSSLENLQRTALGGQVNATIRDRYYGAASATPASIFPVLLRNAQNHFGKLRKDK
HHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
AGLAVNLEKEVGQIIDALPASFPRSLPIHEQGRFAIGYYHQTQARFARNNGQDAPDTASE
CCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCC
GEPT
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA